Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08760

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
1,908,420	+				-0.4
1,908,842	+		LRK54_RS08760	0.26	-1.8
1,908,842	+		LRK54_RS08760	0.26	-0.4
1,908,842	+		LRK54_RS08760	0.26	-0.8
1,908,842	+		LRK54_RS08760	0.26	+0.8
1,908,843	-		LRK54_RS08760	0.26	-1.1
1,908,843	-		LRK54_RS08760	0.26	-1.6
1,908,843	-		LRK54_RS08760	0.26	-0.9
1,908,843	-		LRK54_RS08760	0.26	-1.2
1,908,968	+		LRK54_RS08760	0.37	-0.2
1,908,968	+		LRK54_RS08760	0.37	-0.6
1,908,969	-		LRK54_RS08760	0.37	-0.4
1,908,969	-		LRK54_RS08760	0.37	+0.1
1,909,124	+		LRK54_RS08760	0.51	+0.4
1,909,125	-		LRK54_RS08760	0.51	-0.4
1,909,145	+		LRK54_RS08760	0.53	-0.4
1,909,145	+		LRK54_RS08760	0.53	-1.1
1,909,146	-		LRK54_RS08760	0.53	+0.4
1,909,146	-		LRK54_RS08760	0.53	-0.4
1,909,484	+		LRK54_RS08760	0.84	-0.2
1,909,485	-		LRK54_RS08760	0.84	+0.8
1,909,563	-				+0.1
1,909,563	-				+0.8
1,909,563	-				-0.8
1,909,563	-				+0.8
1,909,563	-				+2.4
1,909,685	+				-0.2
1,909,686	-				+0.8
1,909,749	-				-1.8
1,909,749	-				+0.6
1,909,749	-				-2.9
1,909,749	-				+2.0
1,909,828	+		LRK54_RS08765	0.19	+0.3
1,909,829	-		LRK54_RS08765	0.19	-0.5
1,909,829	-		LRK54_RS08765	0.19	+1.4
1,909,895	+		LRK54_RS08765	0.28	+0.4
1,909,895	+		LRK54_RS08765	0.28	-0.5
1,909,895	+		LRK54_RS08765	0.28	-0.3
1,909,895	+		LRK54_RS08765	0.28	-0.3
1,909,896	-		LRK54_RS08765	0.28	-0.8
1,909,896	-		LRK54_RS08765	0.28	+2.2
1,909,896	-		LRK54_RS08765	0.28	-0.4
1,909,896	-		LRK54_RS08765	0.28	-0.7
1,909,896	-		LRK54_RS08765	0.28	-0.0
1,909,896	-		LRK54_RS08765	0.28	+0.4
1,909,921	+		LRK54_RS08765	0.32	+0.3
1,909,921	+		LRK54_RS08765	0.32	-0.3
1,909,921	+		LRK54_RS08765	0.32	+0.1
1,909,921	+		LRK54_RS08765	0.32	-0.7
1,909,921	+		LRK54_RS08765	0.32	-0.2
1,909,921	+		LRK54_RS08765	0.32	+0.1
1,909,921	+		LRK54_RS08765	0.32	+0.4
1,909,921	+		LRK54_RS08765	0.32	-1.4
1,909,921	+		LRK54_RS08765	0.32	+0.6
1,909,922	-		LRK54_RS08765	0.32	-0.4
1,909,922	-		LRK54_RS08765	0.32	-0.6
1,909,922	-		LRK54_RS08765	0.32	-1.1
1,909,978	+		LRK54_RS08765	0.39	-1.0
1,909,978	+		LRK54_RS08765	0.39	+1.4
1,909,978	+		LRK54_RS08765	0.39	+1.7
1,909,978	+		LRK54_RS08765	0.39	-0.6
1,909,978	+		LRK54_RS08765	0.39	+1.2
1,909,978	+		LRK54_RS08765	0.39	+0.4
1,909,978	+		LRK54_RS08765	0.39	+1.0
1,909,978	+		LRK54_RS08765	0.39	-2.5
1,909,978	+		LRK54_RS08765	0.39	+0.8
1,909,978	+		LRK54_RS08765	0.39	+1.8
1,909,978	+		LRK54_RS08765	0.39	+0.2
1,909,978	+		LRK54_RS08765	0.39	-0.1
1,909,978	+		LRK54_RS08765	0.39	-0.3
1,909,978	+		LRK54_RS08765	0.39	+0.4
1,909,978	+		LRK54_RS08765	0.39	-1.3
1,909,978	+		LRK54_RS08765	0.39	+0.7
1,909,978	+		LRK54_RS08765	0.39	+0.1
1,909,978	+		LRK54_RS08765	0.39	-0.9
1,909,978	+		LRK54_RS08765	0.39	-0.1
1,909,978	+		LRK54_RS08765	0.39	-0.5
1,909,979	-		LRK54_RS08765	0.40	+1.3
1,909,979	-		LRK54_RS08765	0.40	+1.2
1,909,979	-		LRK54_RS08765	0.40	+0.1
1,909,979	-		LRK54_RS08765	0.40	+1.3
1,909,979	-		LRK54_RS08765	0.40	-0.1
1,909,979	-		LRK54_RS08765	0.40	+0.4
1,909,979	-		LRK54_RS08765	0.40	-0.2
1,909,979	-		LRK54_RS08765	0.40	+0.6
1,909,979	-		LRK54_RS08765	0.40	-0.4
1,909,979	-		LRK54_RS08765	0.40	+0.2
1,910,120	-		LRK54_RS08765	0.59	+0.1
1,910,120	-		LRK54_RS08765	0.59	-0.0
1,910,140	+		LRK54_RS08765	0.62	+1.4
1,910,141	-		LRK54_RS08765	0.62	-1.1
1,910,152	+		LRK54_RS08765	0.64	-0.6
1,910,152	+		LRK54_RS08765	0.64	+0.1
1,910,152	+		LRK54_RS08765	0.64	+1.4
1,910,152	+		LRK54_RS08765	0.64	+0.4
1,910,152	+		LRK54_RS08765	0.64	+2.0
1,910,153	-		LRK54_RS08765	0.64	+0.4
1,910,153	-		LRK54_RS08765	0.64	+0.8
1,910,153	-		LRK54_RS08765	0.64	-0.7
1,910,153	-		LRK54_RS08765	0.64	-1.1
1,910,153	-		LRK54_RS08765	0.64	-0.3
1,910,153	-		LRK54_RS08765	0.64	-0.4
1,910,221	+		LRK54_RS08765	0.73	+0.4
1,910,221	+		LRK54_RS08765	0.73	-0.2
1,910,221	+		LRK54_RS08765	0.73	+0.7
1,910,221	+		LRK54_RS08765	0.73	+0.5
1,910,221	+		LRK54_RS08765	0.73	+0.0
1,910,221	+		LRK54_RS08765	0.73	-0.0
1,910,221	+		LRK54_RS08765	0.73	-0.3
1,910,222	-		LRK54_RS08765	0.74	-0.9
1,910,222	-		LRK54_RS08765	0.74	+0.1
1,910,222	-		LRK54_RS08765	0.74	+0.6
1,910,222	-		LRK54_RS08765	0.74	+0.0
1,910,222	-		LRK54_RS08765	0.74	-0.7
1,910,222	-		LRK54_RS08765	0.74	-1.0
1,910,222	-		LRK54_RS08765	0.74	+0.1
1,910,257	+		LRK54_RS08765	0.78	+1.1
1,910,257	+		LRK54_RS08765	0.78	-0.7
1,910,257	+		LRK54_RS08765	0.78	-0.2
1,910,257	+		LRK54_RS08765	0.78	-0.0
1,910,258	-		LRK54_RS08765	0.79	+1.0
1,910,258	-		LRK54_RS08765	0.79	-1.5
1,910,258	-		LRK54_RS08765	0.79	+0.2
1,910,258	-		LRK54_RS08765	0.79	+0.7
1,910,269	+		LRK54_RS08765	0.80	+0.3
1,910,502	+				+0.0
1,910,502	+				-0.2
1,910,502	+				+0.8
1,910,502	+				-0.9
1,910,502	+				+0.5
1,910,502	+				-0.4
1,910,502	+				+0.7
1,910,502	+				-0.1
1,910,503	-				-1.1
1,910,503	-				+1.2
1,910,503	-				-0.2
1,910,503	-				-0.1
1,910,503	-				-0.4
1,910,503	-				-0.2
1,910,503	-				+0.0
1,910,503	-				-0.1
1,910,503	-				-0.1
1,910,503	-				-0.9
1,910,503	-				-0.5
1,910,625	+		LRK54_RS08770	0.16	+0.8
1,910,625	+		LRK54_RS08770	0.16	-1.0
1,910,625	+		LRK54_RS08770	0.16	-1.8
1,910,626	-		LRK54_RS08770	0.16	+0.2
1,910,626	-		LRK54_RS08770	0.16	+0.5
1,910,626	-		LRK54_RS08770	0.16	+0.6