Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08550

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
1,864,242	+		LRK54_RS08550	0.34	+0.8
1,864,242	+		LRK54_RS08550	0.34	-0.7
1,864,242	+		LRK54_RS08550	0.34	-0.4
1,864,242	+		LRK54_RS08550	0.34	-0.3
1,864,242	+		LRK54_RS08550	0.34	-0.1
1,864,243	-		LRK54_RS08550	0.34	-0.5
1,864,243	-		LRK54_RS08550	0.34	+1.0
1,864,243	-		LRK54_RS08550	0.34	-1.3
1,864,243	-		LRK54_RS08550	0.34	+0.5
1,864,243	-		LRK54_RS08550	0.34	+1.8
1,864,386	+				+0.4
1,864,386	+				-0.9
1,864,386	+				+0.4
1,864,386	+				-0.2
1,864,386	+				+1.0
1,864,386	+				-1.2
1,864,386	+				-0.4
1,864,386	+				-0.1
1,864,386	+				+1.6
1,864,386	+				+0.2
1,864,386	+				-0.2
1,864,386	+				-0.2
1,864,386	+				+2.4
1,864,386	+				-1.4
1,864,386	+				-0.7
1,864,386	+				-0.4
1,864,386	+				-0.9
1,864,386	+				+0.6
1,864,386	+				+1.2
1,864,386	+				-0.9
1,864,386	+				-0.7
1,864,386	+				+2.4
1,864,386	+				-1.4
1,864,386	+				+0.6
1,864,386	+				+0.8
1,864,386	+				-0.9
1,864,386	+				+0.1
1,864,386	+				-0.7
1,864,386	+				-1.0
1,864,386	+				-1.0
1,864,386	+				+0.6
1,864,386	+				+0.7
1,864,386	+				-0.8
1,864,387	-				+1.4
1,864,387	-				-2.0
1,864,387	-				+3.4
1,864,387	-				+1.4
1,864,387	-				-0.5
1,864,387	-				+0.5
1,864,387	-				-0.1
1,864,387	-				-1.3
1,864,387	-				-1.7
1,864,387	-				-0.7
1,864,387	-				-0.6
1,864,387	-				-1.0
1,864,387	-				-1.2
1,864,387	-				-1.7
1,864,387	-				-0.1
1,864,387	-				-0.1
1,864,387	-				+0.6
1,864,387	-				-0.4
1,864,387	-				-0.7
1,864,387	-				-0.4
1,864,387	-				+0.5
1,864,387	-				-2.2
1,864,387	-				+0.3
1,864,387	-				+1.6
1,864,387	-				+1.0
1,864,387	-				-0.7
1,864,387	-				+1.2
1,864,387	-				-0.2
1,864,387	-				-0.0
1,864,387	-				-1.4
1,864,387	-				-0.5
1,864,388	+				+0.0
1,864,388	+				+0.3
1,864,388	+				-0.1
1,864,388	+				-0.9
1,864,388	+				+1.0
1,864,388	+				-0.4
1,864,388	+				-0.1
1,864,388	+				+1.0
1,864,388	+				+0.1
1,864,388	+				-0.4
1,864,388	+				+2.4
1,864,388	+				-1.1
1,864,388	+				-0.1
1,864,389	-				+1.0
1,864,389	-				-0.3
1,864,389	-				-1.7
1,864,389	-				+0.9
1,864,389	-				+0.4
1,864,389	-				+0.3
1,864,389	-				+0.0
1,864,389	-				+1.0
1,864,389	-				-0.5
1,864,389	-				-0.8
1,864,424	+				+1.0
1,864,424	+				+0.1
1,864,424	+				+0.2
1,864,424	+				-0.4
1,864,425	-				-1.0
1,864,425	-				+0.3
1,864,425	-				+0.4
1,864,425	-				-0.3
1,864,425	-				+0.1
1,864,618	+		LRK54_RS08555	0.21	+0.8
1,864,618	+		LRK54_RS08555	0.21	-1.7
1,864,618	+		LRK54_RS08555	0.21	+1.4
1,864,618	+		LRK54_RS08555	0.21	-1.5
1,864,618	+		LRK54_RS08555	0.21	+1.1
1,864,618	+		LRK54_RS08555	0.21	-0.2
1,864,618	+		LRK54_RS08555	0.21	-0.1
1,864,618	+		LRK54_RS08555	0.21	-0.4
1,864,618	+		LRK54_RS08555	0.21	-1.1
1,864,618	+		LRK54_RS08555	0.21	-0.8
1,864,618	+		LRK54_RS08555	0.21	+0.5
1,864,618	+		LRK54_RS08555	0.21	-0.3
1,864,619	-		LRK54_RS08555	0.22	-0.1
1,864,619	-		LRK54_RS08555	0.22	+0.7
1,864,619	-		LRK54_RS08555	0.22	+0.8
1,864,619	-		LRK54_RS08555	0.22	-0.1
1,864,619	-		LRK54_RS08555	0.22	-0.4
1,864,619	-		LRK54_RS08555	0.22	+0.1
1,864,619	-		LRK54_RS08555	0.22	+1.1
1,864,619	-		LRK54_RS08555	0.22	+0.8
1,864,619	-		LRK54_RS08555	0.22	+0.1
1,864,619	-		LRK54_RS08555	0.22	+0.2
1,864,619	-		LRK54_RS08555	0.22	+0.4
1,864,875	+		LRK54_RS08555	0.59	+2.8
1,864,875	+		LRK54_RS08555	0.59	+0.8
1,864,876	-		LRK54_RS08555	0.59	+0.6
1,864,876	-		LRK54_RS08555	0.59	+0.8
1,864,876	-		LRK54_RS08555	0.59	-0.5
1,864,876	-		LRK54_RS08555	0.59	-0.3
1,864,903	-		LRK54_RS08555	0.63	-1.7
1,864,995	+		LRK54_RS08555	0.76	-0.8
1,864,996	-		LRK54_RS08555	0.76	-0.6
1,864,996	-		LRK54_RS08555	0.76	+1.1
1,865,018	-		LRK54_RS08555	0.79	-0.0
1,865,028	+		LRK54_RS08555	0.81	+0.9
1,865,028	+		LRK54_RS08555	0.81	+0.8
1,865,029	-		LRK54_RS08555	0.81	-1.1
1,865,070	+		LRK54_RS08555	0.87	-0.1
1,865,070	+		LRK54_RS08555	0.87	+0.1
1,865,070	+		LRK54_RS08555	0.87	-0.8
1,865,071	-		LRK54_RS08555	0.87	+2.5
1,865,162	+				+0.2
1,865,162	+				-0.7
1,865,162	+				-0.3
1,865,162	+				+0.1
1,865,162	+				+1.4
1,865,162	+				+0.3
1,865,163	-				+0.2
1,865,163	-				+0.1
1,865,163	-				+0.2
1,865,163	-				-0.1
1,865,163	-				+0.6
1,865,163	-				+2.9
1,865,333	+		LRK54_RS08560	0.33	+0.4
1,865,333	+		LRK54_RS08560	0.33	-0.9
1,865,333	+		LRK54_RS08560	0.33	+0.8
1,865,334	-		LRK54_RS08560	0.34	+0.6
1,865,334	-		LRK54_RS08560	0.34	-2.4
1,865,334	-		LRK54_RS08560	0.34	+0.5