Experiment: R2A with FW104 filtrate 0.5 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS08530 and LRK54_RS08535 are separated by 88 nucleotides LRK54_RS08535 and LRK54_RS08540 are separated by 7 nucleotides LRK54_RS08540 and LRK54_RS08545 are separated by 94 nucleotides LRK54_RS08545 and LRK54_RS08550 are separated by 13 nucleotides
LRK54_RS08530: LRK54_RS08530 - glycosyl transferase family 9, at 1,860,461 to 1,861,552
_RS08530
LRK54_RS08535: LRK54_RS08535 - tyrosine recombinase XerC, at 1,861,641 to 1,862,525
_RS08535
LRK54_RS08540: LRK54_RS08540 - DUF484 family protein, at 1,862,533 to 1,863,225
_RS08540
LRK54_RS08545: LRK54_RS08545 - diaminopimelate epimerase, at 1,863,320 to 1,864,168
_RS08545
LRK54_RS08550: LRK54_RS08550 - lipoprotein, at 1,864,182 to 1,864,358
_RS08550
Position (kb) 1862
1863
1864 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1861.675 kb on + strand at 1861.675 kb on + strand at 1861.675 kb on + strand at 1861.675 kb on + strand at 1861.675 kb on + strand at 1861.675 kb on + strand at 1861.675 kb on + strand at 1861.675 kb on + strand at 1861.675 kb on + strand at 1861.675 kb on + strand at 1861.675 kb on + strand at 1861.676 kb on - strand at 1861.676 kb on - strand at 1861.676 kb on - strand at 1861.676 kb on - strand at 1861.676 kb on - strand at 1861.676 kb on - strand at 1861.676 kb on - strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.711 kb on + strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.712 kb on - strand at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.802 kb on + strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.803 kb on - strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.875 kb on + strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1861.876 kb on - strand, within LRK54_RS08535 at 1862.101 kb on + strand, within LRK54_RS08535 at 1862.101 kb on + strand, within LRK54_RS08535 at 1862.101 kb on + strand, within LRK54_RS08535 at 1862.101 kb on + strand, within LRK54_RS08535 at 1862.101 kb on + strand, within LRK54_RS08535 at 1862.101 kb on + strand, within LRK54_RS08535 at 1862.101 kb on + strand, within LRK54_RS08535 at 1862.101 kb on + strand, within LRK54_RS08535 at 1862.101 kb on + strand, within LRK54_RS08535 at 1862.101 kb on + strand, within LRK54_RS08535 at 1862.102 kb on - strand, within LRK54_RS08535 at 1862.102 kb on - strand, within LRK54_RS08535 at 1862.102 kb on - strand, within LRK54_RS08535 at 1862.102 kb on - strand, within LRK54_RS08535 at 1862.102 kb on - strand, within LRK54_RS08535 at 1862.102 kb on - strand, within LRK54_RS08535 at 1862.102 kb on - strand, within LRK54_RS08535 at 1862.102 kb on - strand, within LRK54_RS08535 at 1862.102 kb on - strand, within LRK54_RS08535 at 1862.102 kb on - strand, within LRK54_RS08535 at 1862.102 kb on - strand, within LRK54_RS08535 at 1862.211 kb on + strand, within LRK54_RS08535 at 1862.211 kb on + strand, within LRK54_RS08535 at 1862.211 kb on + strand, within LRK54_RS08535 at 1862.211 kb on + strand, within LRK54_RS08535 at 1862.211 kb on + strand, within LRK54_RS08535 at 1862.211 kb on + strand, within LRK54_RS08535 at 1862.211 kb on + strand, within LRK54_RS08535 at 1862.211 kb on + strand, within LRK54_RS08535 at 1862.212 kb on - strand, within LRK54_RS08535 at 1862.212 kb on - strand, within LRK54_RS08535 at 1862.212 kb on - strand, within LRK54_RS08535 at 1862.212 kb on - strand, within LRK54_RS08535 at 1862.212 kb on - strand, within LRK54_RS08535 at 1862.541 kb on + strand at 1862.541 kb on + strand at 1862.541 kb on + strand at 1862.541 kb on + strand at 1862.541 kb on + strand at 1862.541 kb on + strand at 1862.542 kb on - strand at 1862.542 kb on - strand at 1862.542 kb on - strand at 1862.542 kb on - strand at 1862.542 kb on - strand at 1862.881 kb on - strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.068 kb on + strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.069 kb on - strand, within LRK54_RS08540 at 1863.141 kb on - strand, within LRK54_RS08540 at 1863.173 kb on + strand at 1863.173 kb on + strand at 1863.174 kb on - strand at 1863.174 kb on - strand at 1863.174 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X remove 1,861,675 + +0.2 1,861,675 + +1.5 1,861,675 + -0.0 1,861,675 + -0.0 1,861,675 + -1.3 1,861,675 + -0.4 1,861,675 + +0.6 1,861,675 + -0.1 1,861,675 + -0.7 1,861,675 + -0.6 1,861,675 + +0.2 1,861,676 - -2.4 1,861,676 - -1.2 1,861,676 - +0.6 1,861,676 - -0.6 1,861,676 - -0.8 1,861,676 - +2.4 1,861,676 - -2.0 1,861,711 + -0.2 1,861,711 + +1.6 1,861,711 + -1.2 1,861,711 + -0.2 1,861,711 + +0.4 1,861,711 + +0.5 1,861,711 + -0.8 1,861,711 + +0.4 1,861,711 + +0.4 1,861,711 + +0.6 1,861,711 + +0.6 1,861,711 + -1.3 1,861,711 + +0.6 1,861,711 + -2.1 1,861,711 + +0.5 1,861,711 + +0.1 1,861,711 + +0.8 1,861,711 + +1.4 1,861,711 + -0.4 1,861,711 + +1.1 1,861,711 + +0.4 1,861,711 + +0.6 1,861,711 + +3.4 1,861,711 + -2.0 1,861,711 + +0.9 1,861,711 + -1.1 1,861,711 + -0.3 1,861,711 + +0.4 1,861,711 + -0.2 1,861,711 + -0.6 1,861,711 + -0.4 1,861,711 + +0.6 1,861,711 + -0.1 1,861,712 - +0.9 1,861,712 - +1.8 1,861,712 - -0.1 1,861,712 - -0.6 1,861,712 - -0.7 1,861,712 - +1.0 1,861,712 - +2.7 1,861,712 - +1.1 1,861,712 - -0.1 1,861,712 - +0.6 1,861,712 - -0.0 1,861,712 - +0.4 1,861,712 - +0.3 1,861,712 - -0.8 1,861,712 - +1.2 1,861,712 - +1.0 1,861,712 - +0.6 1,861,712 - +0.2 1,861,712 - +0.5 1,861,802 + LRK54_RS08535 0.18 -0.6 1,861,802 + LRK54_RS08535 0.18 -0.4 1,861,802 + LRK54_RS08535 0.18 +0.1 1,861,802 + LRK54_RS08535 0.18 +1.0 1,861,802 + LRK54_RS08535 0.18 +0.3 1,861,802 + LRK54_RS08535 0.18 +0.8 1,861,802 + LRK54_RS08535 0.18 -0.3 1,861,802 + LRK54_RS08535 0.18 -0.0 1,861,802 + LRK54_RS08535 0.18 -0.6 1,861,802 + LRK54_RS08535 0.18 +1.0 1,861,802 + LRK54_RS08535 0.18 +0.7 1,861,802 + LRK54_RS08535 0.18 -1.0 1,861,802 + LRK54_RS08535 0.18 -1.4 1,861,802 + LRK54_RS08535 0.18 -0.4 1,861,802 + LRK54_RS08535 0.18 +0.6 1,861,802 + LRK54_RS08535 0.18 +0.7 1,861,802 + LRK54_RS08535 0.18 -0.3 1,861,802 + LRK54_RS08535 0.18 -0.4 1,861,802 + LRK54_RS08535 0.18 -0.8 1,861,803 - LRK54_RS08535 0.18 -0.5 1,861,803 - LRK54_RS08535 0.18 -0.1 1,861,803 - LRK54_RS08535 0.18 -1.2 1,861,803 - LRK54_RS08535 0.18 -0.8 1,861,803 - LRK54_RS08535 0.18 -0.4 1,861,803 - +1.6 1,861,803 - LRK54_RS08535 0.18 -0.8 1,861,803 - LRK54_RS08535 0.18 +2.4 1,861,803 - LRK54_RS08535 0.18 -0.8 1,861,803 - LRK54_RS08535 0.18 -0.6 1,861,803 - LRK54_RS08535 0.18 +0.5 1,861,803 - LRK54_RS08535 0.18 -2.3 1,861,803 - LRK54_RS08535 0.18 -0.3 1,861,803 - LRK54_RS08535 0.18 -0.2 1,861,803 - LRK54_RS08535 0.18 -0.7 1,861,803 - LRK54_RS08535 0.18 -2.3 1,861,803 - LRK54_RS08535 0.18 +0.5 1,861,875 + LRK54_RS08535 0.26 -0.1 1,861,875 + LRK54_RS08535 0.26 -1.4 1,861,875 + LRK54_RS08535 0.26 -0.3 1,861,875 + LRK54_RS08535 0.26 +1.2 1,861,875 + LRK54_RS08535 0.26 +0.2 1,861,875 + LRK54_RS08535 0.26 +1.8 1,861,875 + LRK54_RS08535 0.26 -0.3 1,861,875 + LRK54_RS08535 0.26 +0.7 1,861,875 + LRK54_RS08535 0.26 -0.3 1,861,875 + LRK54_RS08535 0.26 -1.9 1,861,875 + LRK54_RS08535 0.26 -0.0 1,861,875 + LRK54_RS08535 0.26 -0.4 1,861,875 + LRK54_RS08535 0.26 +0.8 1,861,875 + LRK54_RS08535 0.26 +1.8 1,861,876 - LRK54_RS08535 0.27 +1.2 1,861,876 - LRK54_RS08535 0.27 +0.2 1,861,876 - LRK54_RS08535 0.27 +0.6 1,861,876 - LRK54_RS08535 0.27 +0.3 1,861,876 - LRK54_RS08535 0.27 -0.6 1,861,876 - LRK54_RS08535 0.27 +0.5 1,861,876 - LRK54_RS08535 0.27 +0.1 1,861,876 - LRK54_RS08535 0.27 +0.5 1,861,876 - LRK54_RS08535 0.27 -0.8 1,861,876 - LRK54_RS08535 0.27 +0.5 1,861,876 - LRK54_RS08535 0.27 +0.5 1,861,876 - LRK54_RS08535 0.27 -0.5 1,861,876 - LRK54_RS08535 0.27 -0.2 1,861,876 - LRK54_RS08535 0.27 -0.8 1,861,876 - LRK54_RS08535 0.27 +0.3 1,861,876 - LRK54_RS08535 0.27 +2.0 1,861,876 - LRK54_RS08535 0.27 -0.4 1,862,101 + LRK54_RS08535 0.52 -0.8 1,862,101 + LRK54_RS08535 0.52 +0.4 1,862,101 + LRK54_RS08535 0.52 +0.5 1,862,101 + LRK54_RS08535 0.52 -0.7 1,862,101 + LRK54_RS08535 0.52 +1.4 1,862,101 + LRK54_RS08535 0.52 +0.0 1,862,101 + LRK54_RS08535 0.52 -0.2 1,862,101 + LRK54_RS08535 0.52 +0.1 1,862,101 + LRK54_RS08535 0.52 -1.1 1,862,101 + LRK54_RS08535 0.52 -0.4 1,862,102 - LRK54_RS08535 0.52 -0.8 1,862,102 - LRK54_RS08535 0.52 -0.2 1,862,102 - LRK54_RS08535 0.52 -0.5 1,862,102 - LRK54_RS08535 0.52 -0.7 1,862,102 - LRK54_RS08535 0.52 +0.2 1,862,102 - LRK54_RS08535 0.52 +2.4 1,862,102 - LRK54_RS08535 0.52 +0.7 1,862,102 - LRK54_RS08535 0.52 -0.2 1,862,102 - LRK54_RS08535 0.52 +0.8 1,862,102 - LRK54_RS08535 0.52 -0.9 1,862,102 - LRK54_RS08535 0.52 -0.1 1,862,211 + LRK54_RS08535 0.64 -0.3 1,862,211 + LRK54_RS08535 0.64 -0.3 1,862,211 + LRK54_RS08535 0.64 -0.1 1,862,211 + LRK54_RS08535 0.64 -1.2 1,862,211 + LRK54_RS08535 0.64 -0.9 1,862,211 + LRK54_RS08535 0.64 +0.3 1,862,211 + LRK54_RS08535 0.64 -0.7 1,862,211 + LRK54_RS08535 0.64 -1.1 1,862,212 - LRK54_RS08535 0.65 -0.5 1,862,212 - LRK54_RS08535 0.65 +1.0 1,862,212 - LRK54_RS08535 0.65 +0.0 1,862,212 - LRK54_RS08535 0.65 -1.3 1,862,212 - LRK54_RS08535 0.65 -0.5 1,862,541 + +2.0 1,862,541 + -0.1 1,862,541 + -2.3 1,862,541 + -0.0 1,862,541 + -0.1 1,862,541 + +0.8 1,862,542 - -0.1 1,862,542 - -1.1 1,862,542 - +1.7 1,862,542 - -0.1 1,862,542 - +0.2 1,862,881 - LRK54_RS08540 0.50 -0.6 1,863,068 + LRK54_RS08540 0.77 +1.0 1,863,068 + LRK54_RS08540 0.77 +1.4 1,863,068 + LRK54_RS08540 0.77 -0.2 1,863,068 + LRK54_RS08540 0.77 -2.5 1,863,068 + LRK54_RS08540 0.77 -1.0 1,863,068 + LRK54_RS08540 0.77 +0.7 1,863,068 + LRK54_RS08540 0.77 -2.1 1,863,068 + LRK54_RS08540 0.77 -2.2 1,863,068 + LRK54_RS08540 0.77 -1.8 1,863,068 + LRK54_RS08540 0.77 -1.3 1,863,068 + LRK54_RS08540 0.77 -2.0 1,863,068 + LRK54_RS08540 0.77 -0.9 1,863,068 + LRK54_RS08540 0.77 -0.8 1,863,069 - LRK54_RS08540 0.77 -1.1 1,863,069 - LRK54_RS08540 0.77 -0.4 1,863,069 - LRK54_RS08540 0.77 -1.0 1,863,069 - LRK54_RS08540 0.77 -1.5 1,863,069 - LRK54_RS08540 0.77 -0.1 1,863,069 - LRK54_RS08540 0.77 -0.9 1,863,069 - LRK54_RS08540 0.77 +0.3 1,863,069 - LRK54_RS08540 0.77 +0.8 1,863,069 - LRK54_RS08540 0.77 -1.7 1,863,069 - LRK54_RS08540 0.77 -1.3 1,863,069 - LRK54_RS08540 0.77 +1.0 1,863,069 - LRK54_RS08540 0.77 -0.2 1,863,141 - LRK54_RS08540 0.88 -0.8 1,863,173 + -0.4 1,863,173 + +1.1 1,863,174 - +1.2 1,863,174 - -0.3 1,863,174 - -1.0
Or see this region's nucleotide sequence