Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08395

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
1,827,519	+				-1.5
1,827,519	+				+0.3
1,827,519	+				+0.4
1,827,519	+				-0.6
1,827,519	+				+0.8
1,827,519	+				+1.1
1,827,520	-				+0.4
1,827,520	-				+0.9
1,827,525	+				-0.4
1,827,525	+				-1.1
1,827,525	+				+0.4
1,827,525	+				+1.7
1,827,525	+				+1.3
1,827,525	+				-0.8
1,827,525	+				-0.2
1,827,525	+				-2.0
1,827,525	+				+0.6
1,827,525	+				-0.2
1,827,525	+				+0.2
1,827,525	+				-0.1
1,827,525	+				+0.8
1,827,525	+				+2.4
1,827,525	+				-0.6
1,827,525	+				+2.7
1,827,525	+				-0.3
1,827,525	+				-1.1
1,827,525	+				+0.4
1,827,525	+				-0.2
1,827,525	+				+0.6
1,827,525	+				-0.2
1,827,525	+				+0.3
1,827,525	+				+0.1
1,827,526	-				+0.5
1,827,526	-				-0.4
1,827,526	-				+0.8
1,827,526	-				-0.5
1,827,526	-				+0.2
1,827,526	-				-0.1
1,827,526	-				-0.2
1,827,526	-				-0.5
1,827,526	-				+1.2
1,827,526	-				-0.6
1,827,526	-				+1.9
1,827,526	-				-0.2
1,827,526	-				+0.3
1,827,526	-				-0.6
1,827,526	-				-0.2
1,827,526	-				-1.9
1,827,526	-				-0.8
1,827,526	-				-0.9
1,827,533	+				+1.1
1,827,533	+				-0.1
1,827,533	+				-0.0
1,827,533	+				+0.1
1,827,533	+				+0.3
1,827,533	+				+0.1
1,827,534	-				+0.1
1,827,534	-				-0.4
1,827,534	-				-0.6
1,827,534	-				+2.0
1,827,534	-				-1.5
1,827,534	-				-1.1
1,827,534	-				-0.2
1,827,539	+				-0.5
1,827,539	+				-0.5
1,827,539	+				-0.8
1,827,539	+				-0.2
1,827,539	+				+1.2
1,827,539	+				+0.1
1,827,539	+				-0.2
1,827,539	+				-0.1
1,827,539	+				+0.6
1,827,539	+				+0.2
1,827,539	+				+0.5
1,827,540	-				-0.5
1,827,540	-				-0.5
1,827,540	-				+2.4
1,827,540	-				+0.2
1,827,540	-				-0.4
1,827,540	-				+0.5
1,827,540	-				+0.1
1,827,540	-				+1.0
1,827,540	-				-0.0
1,827,540	-				-1.4
1,827,540	-				+0.9
1,827,540	-				-1.9
1,827,540	-				-0.4
1,827,540	-				-0.6
1,827,561	+				-1.2
1,827,561	+				+0.6
1,827,562	-				-1.0
1,827,562	-				+0.7
1,827,592	+		LRK54_RS08385	0.12	-0.8
1,827,592	+		LRK54_RS08385	0.12	+0.5
1,827,593	-		LRK54_RS08385	0.13	-0.2
1,827,721	+		LRK54_RS08385	0.46	+0.1
1,827,721	+		LRK54_RS08385	0.46	+0.9
1,827,722	-		LRK54_RS08385	0.46	+0.5
1,827,978	+				-0.4
1,827,979	-				+0.2
1,827,979	-				+0.8
1,828,302	+				+0.1
1,828,302	+				-2.6
1,828,302	+				-0.3
1,828,302	+				+0.8
1,828,302	+				+0.3
1,828,302	+				+1.0
1,828,302	+				+1.0
1,828,302	+				+0.4
1,828,302	+				-1.2
1,828,302	+				-0.5
1,828,302	+				-1.2
1,828,302	+				+0.5
1,828,302	+				-0.1
1,828,302	+				-0.0
1,828,302	+				-0.0
1,828,303	-				-2.4
1,828,303	-				+1.8
1,828,303	-				+0.3
1,828,303	-				-0.1
1,828,303	-				-0.3
1,828,303	-				-0.1
1,828,303	-				+0.6
1,828,303	-				-0.2
1,828,303	-				-0.6
1,828,303	-				-1.7
1,828,303	-				+0.1
1,828,303	-				+0.8
1,828,303	-				-0.7
1,828,303	-				-0.1
1,828,303	-				-0.3
1,828,303	-				-1.0
1,828,303	-				+1.3
1,828,354	+				-1.0
1,828,354	+				+0.4
1,828,354	+				-0.2
1,828,354	+				+0.0
1,828,354	+				-0.4
1,828,354	+				+0.5
1,828,354	+				+0.2
1,828,354	+				-0.2
1,828,354	+				+0.1
1,828,354	+				+0.4
1,828,354	+				+1.5
1,828,354	+				+0.0
1,828,354	+				+0.2
1,828,354	+				-2.1
1,828,354	+				+0.2
1,828,355	-				-2.0
1,828,355	-				+0.8
1,828,355	-				+0.2
1,828,355	-				+1.3
1,828,355	-				+0.2
1,828,355	-				-0.5
1,828,355	-				-1.0
1,828,355	-				-0.1
1,828,355	-				-0.4
1,828,355	-				+0.2
1,828,355	-				-0.4
1,828,355	-				+0.2
1,828,355	-				-1.0
1,828,537	+		LRK54_RS08395	0.74	+2.1
1,828,537	+		LRK54_RS08395	0.74	+0.6
1,828,538	-		LRK54_RS08395	0.74	-1.0
1,828,538	-		LRK54_RS08395	0.74	+0.1
1,828,538	-		LRK54_RS08395	0.74	-0.3
1,828,538	-		LRK54_RS08395	0.74	+0.8
1,828,538	-		LRK54_RS08395	0.74	-1.2
1,828,538	-		LRK54_RS08395	0.74	+0.3
1,828,597	+				+0.4
1,828,598	-				-1.1
1,828,598	-				-0.9
1,828,682	+				-0.2
1,828,682	+				-1.2
1,828,682	+				+0.0
1,828,682	+				+0.1
1,828,682	+				+0.2
1,828,682	+				+1.5
1,828,682	+				-0.5
1,828,682	+				+0.1
1,828,683	-				+1.0
1,828,683	-				-0.6
1,828,683	-				+0.6
1,828,683	-				+0.1
1,828,721	+				-0.8
1,828,721	+				-1.6
1,828,721	+				-0.1
1,828,721	+				-0.9
1,828,722	-				-0.7
1,828,722	-				+1.0
1,828,722	-				+0.2
1,828,722	-				-0.0
1,828,722	-				-0.6
1,828,722	-				+0.3
1,828,775	+				+0.3
1,828,775	+				+1.2
1,828,775	+				+0.2
1,828,775	+				+2.3
1,828,775	+				-0.7
1,828,775	+				+0.0
1,828,775	+				-0.7
1,828,776	-				+0.4
1,828,776	-				-1.1
1,828,776	-				+0.1
1,828,776	-				-0.4
1,828,776	-				-0.6
1,828,776	-				-0.7
1,828,776	-				+0.9
1,828,776	-				+0.2
1,828,776	-				+1.0
1,828,776	-				+0.1
1,828,776	-				-0.7
1,828,776	-				-0.5
1,828,776	-				+0.8
1,828,776	-				-0.8
1,828,776	-				-0.7
1,828,776	-				-1.7
1,828,776	-				-0.7
1,828,790	+				-1.0
1,828,790	+				+0.1
1,828,790	+				+0.5
1,828,790	+				-0.5
1,828,790	+				+0.9
1,828,790	+				-0.4
1,828,790	+				-2.4
1,828,790	+				+1.0
1,828,790	+				-0.4
1,828,790	+				+0.1
1,828,790	+				+0.7
1,828,790	+				-0.7
1,828,790	+				+0.2
1,828,790	+				-0.4
1,828,790	+				+0.1
1,828,790	+				+0.0
1,828,790	+				+1.1
1,828,790	+				-0.6
1,828,790	+				-0.4
1,828,790	+				+0.1
1,828,790	+				+0.1
1,828,791	-				-1.1
1,828,791	-				-0.2
1,828,791	-				-0.6
1,828,791	-				-0.5
1,828,791	-				+0.3
1,828,791	-				-0.7
1,828,791	-				+0.1
1,828,791	-				-0.8
1,828,791	-				-1.4
1,828,791	-				+1.3
1,828,791	-				-0.6
1,828,791	-				-0.8
1,828,791	-				-0.3
1,828,791	-				+0.9
1,828,791	-				-2.5
1,828,791	-				-0.1
1,828,791	-				-0.6
1,828,791	-				+0.3
1,828,791	-				-0.8
1,828,791	-				-0.2
1,828,791	-				-0.7
1,828,791	-				+0.5
1,828,791	-				+1.0
1,828,791	-				-0.4
1,828,793	+				+0.8
1,828,793	+				+0.3
1,828,793	+				-0.1
1,828,793	+				-1.8
1,828,793	+				-1.1
1,828,793	+				-0.9
1,828,794	-				+0.8
1,828,794	-				+0.2
1,828,794	-				-0.3
1,828,794	-				-0.6
1,828,794	-				-0.2
1,828,794	-				+0.8
1,828,814	+				+1.0
1,828,814	+				+0.5
1,828,814	+				-0.0
1,828,814	+				+0.8
1,828,814	+				-0.5
1,828,815	-				-0.5
1,828,815	-				+1.6
1,828,815	-				-0.8
1,828,815	-				-1.1
1,828,815	-				+1.2
1,828,815	-				-0.2
1,828,940	+		LRK54_RS08400	0.15	-0.2
1,828,940	+		LRK54_RS08400	0.15	+0.7
1,828,940	+		LRK54_RS08400	0.15	-0.0
1,828,940	+		LRK54_RS08400	0.15	-0.4
1,828,940	+		LRK54_RS08400	0.15	-0.4
1,828,940	+		LRK54_RS08400	0.15	+0.8
1,828,940	+		LRK54_RS08400	0.15	-0.3
1,828,940	+		LRK54_RS08400	0.15	-1.5
1,828,940	+		LRK54_RS08400	0.15	+0.8
1,828,940	+		LRK54_RS08400	0.15	-0.8
1,828,940	+		LRK54_RS08400	0.15	-0.1
1,828,941	-		LRK54_RS08400	0.16	-1.3
1,828,941	-		LRK54_RS08400	0.16	-0.1
1,828,941	-		LRK54_RS08400	0.16	+0.3
1,828,941	-		LRK54_RS08400	0.16	-0.0
1,828,941	-		LRK54_RS08400	0.16	-0.2
1,828,941	-		LRK54_RS08400	0.16	+0.8
1,828,941	-		LRK54_RS08400	0.16	-0.4
1,828,941	-		LRK54_RS08400	0.16	+0.4
1,828,941	-		LRK54_RS08400	0.16	-0.4
1,828,941	-		LRK54_RS08400	0.16	+0.3
1,828,941	-		LRK54_RS08400	0.16	+0.1
1,828,941	-		LRK54_RS08400	0.16	-0.0
1,828,967	+		LRK54_RS08400	0.17	-1.1
1,828,967	+		LRK54_RS08400	0.17	-1.0
1,828,967	+		LRK54_RS08400	0.17	-0.2
1,828,968	-		LRK54_RS08400	0.17	-0.2
1,829,025	-		LRK54_RS08400	0.21	+1.4
1,829,025	-		LRK54_RS08400	0.21	-1.2
1,829,025	-		LRK54_RS08400	0.21	+0.4
1,829,132	+		LRK54_RS08400	0.27	+0.9
1,829,133	-		LRK54_RS08400	0.27	-0.4
1,829,133	-		LRK54_RS08400	0.27	+0.4
1,829,303	+		LRK54_RS08400	0.37	+0.8
1,829,303	+		LRK54_RS08400	0.37	-1.4
1,829,304	-		LRK54_RS08400	0.37	-0.1
1,829,304	-		LRK54_RS08400	0.37	-1.6
1,829,304	-		LRK54_RS08400	0.37	+0.8
1,829,304	-		LRK54_RS08400	0.37	+0.3
1,829,304	-		LRK54_RS08400	0.37	+0.6
1,829,597	+		LRK54_RS08400	0.55	+1.9
1,829,597	+		LRK54_RS08400	0.55	-0.6
1,829,597	+		LRK54_RS08400	0.55	-0.6
1,829,597	+		LRK54_RS08400	0.55	-0.6
1,829,597	+		LRK54_RS08400	0.55	-0.9
1,829,597	+		LRK54_RS08400	0.55	+0.6
1,829,597	+		LRK54_RS08400	0.55	-0.2
1,829,597	+		LRK54_RS08400	0.55	+0.1
1,829,597	+		LRK54_RS08400	0.55	-0.2
1,829,597	+		LRK54_RS08400	0.55	-0.1
1,829,598	-		LRK54_RS08400	0.55	-0.5
1,829,598	-		LRK54_RS08400	0.55	+0.4
1,829,598	-		LRK54_RS08400	0.55	+0.2
1,829,598	-		LRK54_RS08400	0.55	-0.7
1,829,598	-		LRK54_RS08400	0.55	-0.8
1,829,598	-		LRK54_RS08400	0.55	-0.5
1,829,598	-		LRK54_RS08400	0.55	-1.1
1,829,598	-		LRK54_RS08400	0.55	+0.3
1,829,598	-		LRK54_RS08400	0.55	-0.5
1,829,598	-		LRK54_RS08400	0.55	-1.0
1,829,598	-		LRK54_RS08400	0.55	+2.4