Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07805

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
1,696,292	+		LRK54_RS07800	0.33	+1.0
1,696,292	+		LRK54_RS07800	0.33	-0.3
1,696,292	+		LRK54_RS07800	0.33	+1.6
1,696,293	-		LRK54_RS07800	0.33	-0.8
1,696,293	-		LRK54_RS07800	0.33	+1.9
1,696,293	-		LRK54_RS07800	0.33	-2.2
1,696,293	-		LRK54_RS07800	0.33	-0.2
1,696,293	-		LRK54_RS07800	0.33	+0.2
1,696,293	-		LRK54_RS07800	0.33	+0.3
1,696,340	+		LRK54_RS07800	0.36	+0.5
1,696,341	-		LRK54_RS07800	0.36	+1.0
1,696,375	+		LRK54_RS07800	0.38	-0.1
1,696,375	+		LRK54_RS07800	0.38	+1.7
1,696,375	+		LRK54_RS07800	0.38	+0.4
1,696,375	+		LRK54_RS07800	0.38	-0.6
1,696,375	+		LRK54_RS07800	0.38	-0.2
1,696,375	+		LRK54_RS07800	0.38	+0.6
1,696,375	+		LRK54_RS07800	0.38	+1.2
1,696,375	+		LRK54_RS07800	0.38	+0.4
1,696,376	-		LRK54_RS07800	0.38	-1.3
1,696,376	-		LRK54_RS07800	0.38	+1.1
1,696,376	-		LRK54_RS07800	0.38	+0.0
1,696,376	-		LRK54_RS07800	0.38	-0.4
1,696,376	-		LRK54_RS07800	0.38	-0.4
1,696,376	-		LRK54_RS07800	0.38	+1.5
1,696,376	-		LRK54_RS07800	0.38	+0.1
1,696,376	-		LRK54_RS07800	0.38	+0.3
1,696,376	-		LRK54_RS07800	0.38	-0.7
1,696,379	+		LRK54_RS07800	0.39	-1.0
1,696,379	+		LRK54_RS07800	0.39	+0.2
1,696,379	+		LRK54_RS07800	0.39	+0.8
1,696,379	+		LRK54_RS07800	0.39	-0.9
1,696,379	+		LRK54_RS07800	0.39	-0.3
1,696,379	+		LRK54_RS07800	0.39	+0.4
1,696,379	+		LRK54_RS07800	0.39	-0.1
1,696,379	+		LRK54_RS07800	0.39	-0.1
1,696,379	+		LRK54_RS07800	0.39	+0.8
1,696,379	+		LRK54_RS07800	0.39	+0.5
1,696,379	+		LRK54_RS07800	0.39	-0.7
1,696,379	+		LRK54_RS07800	0.39	+0.4
1,696,379	+		LRK54_RS07800	0.39	-0.1
1,696,379	+		LRK54_RS07800	0.39	+0.7
1,696,379	+		LRK54_RS07800	0.39	+0.2
1,696,379	+		LRK54_RS07800	0.39	+0.5
1,696,379	+		LRK54_RS07800	0.39	+0.3
1,696,379	+		LRK54_RS07800	0.39	+1.0
1,696,379	+		LRK54_RS07800	0.39	+2.3
1,696,379	+		LRK54_RS07800	0.39	-0.9
1,696,379	+		LRK54_RS07800	0.39	-0.7
1,696,380	-		LRK54_RS07800	0.39	+1.0
1,696,380	-		LRK54_RS07800	0.39	-0.2
1,696,380	-		LRK54_RS07800	0.39	+0.4
1,696,380	-		LRK54_RS07800	0.39	+0.6
1,696,380	-		LRK54_RS07800	0.39	+1.0
1,696,380	-		LRK54_RS07800	0.39	+0.1
1,696,380	-		LRK54_RS07800	0.39	-0.8
1,696,380	-		LRK54_RS07800	0.39	+0.3
1,696,380	-		LRK54_RS07800	0.39	+1.1
1,696,380	-		LRK54_RS07800	0.39	+0.3
1,696,380	-		LRK54_RS07800	0.39	+0.7
1,696,380	-		LRK54_RS07800	0.39	+0.7
1,696,380	-		LRK54_RS07800	0.39	-1.0
1,696,380	-		LRK54_RS07800	0.39	+2.3
1,696,380	-		LRK54_RS07800	0.39	-0.4
1,696,380	-		LRK54_RS07800	0.39	-0.1
1,696,380	-		LRK54_RS07800	0.39	-0.7
1,696,380	-		LRK54_RS07800	0.39	+0.3
1,696,380	-		LRK54_RS07800	0.39	+0.5
1,696,380	-		LRK54_RS07800	0.39	+0.2
1,696,380	-		LRK54_RS07800	0.39	+0.5
1,696,380	-		LRK54_RS07800	0.39	+0.1
1,696,380	-		LRK54_RS07800	0.39	-0.9
1,696,380	-		LRK54_RS07800	0.39	-0.7
1,696,380	-		LRK54_RS07800	0.39	-0.1
1,696,380	-		LRK54_RS07800	0.39	-1.1
1,696,380	-		LRK54_RS07800	0.39	+0.0
1,696,380	-		LRK54_RS07800	0.39	+0.6
1,696,382	+		LRK54_RS07800	0.39	-0.1
1,696,382	+		LRK54_RS07800	0.39	+0.2
1,696,382	+		LRK54_RS07800	0.39	+0.6
1,696,382	+		LRK54_RS07800	0.39	+0.0
1,696,382	+		LRK54_RS07800	0.39	+0.4
1,696,382	+		LRK54_RS07800	0.39	-0.2
1,696,383	-		LRK54_RS07800	0.39	+0.1
1,696,383	-		LRK54_RS07800	0.39	+0.3
1,696,383	-		LRK54_RS07800	0.39	-0.5
1,696,383	-		LRK54_RS07800	0.39	+0.3
1,696,383	-		LRK54_RS07800	0.39	+0.2
1,696,616	+		LRK54_RS07800	0.55	+0.4
1,696,617	-		LRK54_RS07800	0.55	-0.2
1,696,697	+		LRK54_RS07800	0.60	+0.4
1,696,698	-		LRK54_RS07800	0.60	+0.0
1,696,878	+		LRK54_RS07800	0.72	+1.0
1,696,878	+		LRK54_RS07800	0.72	+0.0
1,696,878	+		LRK54_RS07800	0.72	-1.9
1,696,879	-		LRK54_RS07800	0.73	+0.6
1,696,879	-		LRK54_RS07800	0.73	+0.6
1,696,879	-		LRK54_RS07800	0.73	+0.6
1,697,244	+				-1.8
1,697,245	-				-0.8
1,697,245	-				+3.0
1,697,329	+				+0.6
1,697,330	-				+0.4
1,697,330	-				+0.8
1,697,337	-				+0.4
1,697,362	+				-0.9
1,697,362	+				+0.2
1,697,362	+				-0.5
1,697,362	+				+0.7
1,697,362	+				+0.6
1,697,362	+				+2.0
1,697,363	-				+1.2
1,697,363	-				+0.9
1,697,363	-				-0.3
1,697,363	-				+0.8
1,697,641	+		LRK54_RS07805	0.26	-0.4
1,697,642	-		LRK54_RS07805	0.26	+1.0
1,697,713	+		LRK54_RS07805	0.31	+1.0
1,697,713	+		LRK54_RS07805	0.31	+0.5
1,697,713	+		LRK54_RS07805	0.31	-0.4
1,697,714	-		LRK54_RS07805	0.31	+0.6
1,697,714	-		LRK54_RS07805	0.31	-0.1
1,697,728	+		LRK54_RS07805	0.32	-0.7
1,697,728	+		LRK54_RS07805	0.32	-0.9
1,697,728	+		LRK54_RS07805	0.32	-0.0
1,697,728	+		LRK54_RS07805	0.32	+0.5
1,697,728	+		LRK54_RS07805	0.32	+1.2
1,697,728	+		LRK54_RS07805	0.32	-0.2
1,697,728	+		LRK54_RS07805	0.32	+0.4
1,697,729	-		LRK54_RS07805	0.33	-0.2
1,697,729	-		LRK54_RS07805	0.33	-0.8
1,697,729	-		LRK54_RS07805	0.33	+0.4
1,697,729	-		LRK54_RS07805	0.33	-0.4
1,697,729	-		LRK54_RS07805	0.33	-0.6
1,697,866	+		LRK54_RS07805	0.42	+0.5
1,697,866	+		LRK54_RS07805	0.42	-0.5
1,697,866	+		LRK54_RS07805	0.42	-0.1
1,697,866	+		LRK54_RS07805	0.42	+1.8
1,697,867	-		LRK54_RS07805	0.43	+0.6
1,697,867	-		LRK54_RS07805	0.43	+2.8
1,697,867	-		LRK54_RS07805	0.43	-0.2
1,697,867	-		LRK54_RS07805	0.43	-0.4
1,697,867	-		LRK54_RS07805	0.43	+0.1
1,697,947	+		LRK54_RS07805	0.48	+0.7
1,697,947	+		LRK54_RS07805	0.48	-1.2
1,697,947	+		LRK54_RS07805	0.48	+1.0
1,697,947	+		LRK54_RS07805	0.48	-0.6
1,697,947	+		LRK54_RS07805	0.48	-0.0
1,697,947	+		LRK54_RS07805	0.48	+0.3
1,697,948	-		LRK54_RS07805	0.48	-0.5
1,697,948	-		LRK54_RS07805	0.48	-0.5
1,697,948	-		LRK54_RS07805	0.48	+0.9
1,697,948	-		LRK54_RS07805	0.48	-1.3
1,697,948	-		LRK54_RS07805	0.48	-0.3
1,698,022	+		LRK54_RS07805	0.54	+0.2
1,698,022	+		LRK54_RS07805	0.54	-0.4
1,698,022	+		LRK54_RS07805	0.54	-0.7
1,698,023	-		LRK54_RS07805	0.54	-0.2
1,698,023	-		LRK54_RS07805	0.54	+0.5
1,698,023	-		LRK54_RS07805	0.54	+1.1
1,698,023	-		LRK54_RS07805	0.54	+0.3
1,698,103	+		LRK54_RS07805	0.60	+0.1
1,698,103	+		LRK54_RS07805	0.60	+0.8
1,698,103	+		LRK54_RS07805	0.60	-0.3
1,698,103	+		LRK54_RS07805	0.60	+1.2
1,698,103	+		LRK54_RS07805	0.60	+0.1
1,698,103	+		LRK54_RS07805	0.60	+0.2
1,698,103	+		LRK54_RS07805	0.60	+0.3
1,698,104	-		LRK54_RS07805	0.60	-0.4
1,698,104	-		LRK54_RS07805	0.60	+0.4
1,698,104	-		LRK54_RS07805	0.60	+0.3
1,698,104	-		LRK54_RS07805	0.60	-1.0
1,698,104	-		LRK54_RS07805	0.60	+1.0
1,698,104	-		LRK54_RS07805	0.60	+0.8
1,698,104	-		LRK54_RS07805	0.60	+0.4
1,698,104	-		LRK54_RS07805	0.60	-0.4
1,698,118	+		LRK54_RS07805	0.61	+0.7
1,698,118	+		LRK54_RS07805	0.61	-0.3
1,698,118	+		LRK54_RS07805	0.61	-0.3
1,698,118	+		LRK54_RS07805	0.61	-0.7
1,698,119	-		LRK54_RS07805	0.61	-1.0
1,698,119	-		LRK54_RS07805	0.61	-0.8
1,698,119	-		LRK54_RS07805	0.61	+0.8
1,698,119	-		LRK54_RS07805	0.61	+0.7
1,698,119	-		LRK54_RS07805	0.61	+0.4
1,698,119	-		LRK54_RS07805	0.61	+0.0
1,698,155	-		LRK54_RS07805	0.63	-0.1
1,698,182	-		LRK54_RS07805	0.65	-1.0
1,698,182	-		LRK54_RS07805	0.65	-0.6
1,698,304	+		LRK54_RS07805	0.74	+1.5
1,698,304	+		LRK54_RS07805	0.74	-0.2
1,698,304	+		LRK54_RS07805	0.74	-0.3
1,698,304	+		LRK54_RS07805	0.74	-1.2
1,698,304	+		LRK54_RS07805	0.74	+0.6
1,698,304	+		LRK54_RS07805	0.74	-0.3
1,698,304	+		LRK54_RS07805	0.74	+1.2
1,698,304	+		LRK54_RS07805	0.74	-1.0
1,698,305	-		LRK54_RS07805	0.74	+0.4
1,698,305	-		LRK54_RS07805	0.74	-0.4
1,698,305	-		LRK54_RS07805	0.74	+0.7
1,698,305	-		LRK54_RS07805	0.74	+0.6
1,698,305	-		LRK54_RS07805	0.74	+0.2
1,698,305	-		LRK54_RS07805	0.74	+1.4
1,698,305	-		LRK54_RS07805	0.74	+1.7
1,698,305	-		LRK54_RS07805	0.74	+1.8
1,698,472	+		LRK54_RS07805	0.86	+0.4
1,698,472	+		LRK54_RS07805	0.86	-0.1
1,698,472	+		LRK54_RS07805	0.86	-0.5
1,698,472	+		LRK54_RS07805	0.86	-0.2
1,698,472	+		LRK54_RS07805	0.86	+1.7
1,698,472	+		LRK54_RS07805	0.86	+1.8
1,698,473	-		LRK54_RS07805	0.86	+0.7
1,698,473	-		LRK54_RS07805	0.86	+0.5
1,698,473	-		LRK54_RS07805	0.86	+0.5
1,698,473	-		LRK54_RS07805	0.86	+0.3
1,698,556	+				+1.9
1,698,556	+				-0.3
1,698,557	-				+0.9
1,698,557	-				+1.8
1,698,692	+				+0.5
1,698,692	+				+0.7
1,698,692	+				+0.7
1,698,692	+				+0.5
1,698,692	+				+0.7
1,698,692	+				-1.2
1,698,692	+				-0.0
1,698,692	+				-0.7
1,698,692	+				+0.0
1,698,693	-				+0.1
1,698,693	-				-0.0
1,698,693	-				+0.1
1,698,693	-				+0.2
1,698,693	-				+1.1
1,698,693	-				+0.4
1,699,104	+		LRK54_RS07810	0.29	+0.3
1,699,105	+		LRK54_RS07810	0.29	-0.3
1,699,105	+		LRK54_RS07810	0.29	+0.5
1,699,105	+		LRK54_RS07810	0.29	+0.5
1,699,105	+		LRK54_RS07810	0.29	+0.7
1,699,105	+		LRK54_RS07810	0.29	-0.4
1,699,105	+		LRK54_RS07810	0.29	+1.9
1,699,105	+		LRK54_RS07810	0.29	-0.0
1,699,105	+		LRK54_RS07810	0.29	-0.6
1,699,105	+		LRK54_RS07810	0.29	-1.3
1,699,105	+		LRK54_RS07810	0.29	+1.7
1,699,105	+		LRK54_RS07810	0.29	+0.2
1,699,105	+		LRK54_RS07810	0.29	+0.4
1,699,105	+		LRK54_RS07810	0.29	+0.8
1,699,105	+		LRK54_RS07810	0.29	-0.5
1,699,106	-		LRK54_RS07810	0.29	+0.7
1,699,106	-		LRK54_RS07810	0.29	+0.9
1,699,106	-		LRK54_RS07810	0.29	-0.2
1,699,106	-		LRK54_RS07810	0.29	+0.3
1,699,106	-		LRK54_RS07810	0.29	+0.1
1,699,106	-		LRK54_RS07810	0.29	-0.9
1,699,106	-		LRK54_RS07810	0.29	-2.2
1,699,106	-		LRK54_RS07810	0.29	-0.5
1,699,106	-		LRK54_RS07810	0.29	+0.6
1,699,321	+		LRK54_RS07810	0.52	-0.6
1,699,321	+		LRK54_RS07810	0.52	-0.3
1,699,321	+		LRK54_RS07810	0.52	-0.9
1,699,321	+		LRK54_RS07810	0.52	-0.6
1,699,321	+		LRK54_RS07810	0.52	+0.7
1,699,321	+		LRK54_RS07810	0.52	-0.3
1,699,321	+		LRK54_RS07810	0.52	-0.5
1,699,322	-		LRK54_RS07810	0.52	+1.0
1,699,322	-		LRK54_RS07810	0.52	-1.7
1,699,322	-		LRK54_RS07810	0.52	-0.7
1,699,322	-		LRK54_RS07810	0.52	-0.8
1,699,322	-		LRK54_RS07810	0.52	+0.4
1,699,322	-		LRK54_RS07810	0.52	+1.6
1,699,393	+		LRK54_RS07810	0.59	+0.2
1,699,393	+		LRK54_RS07810	0.59	-0.5
1,699,393	+		LRK54_RS07810	0.59	-0.8
1,699,393	+		LRK54_RS07810	0.59	-0.1
1,699,393	+		LRK54_RS07810	0.59	-0.2
1,699,394	-		LRK54_RS07810	0.59	-1.0
1,699,394	-		LRK54_RS07810	0.59	+1.0
1,699,394	-		LRK54_RS07810	0.59	+0.9
1,699,394	-		LRK54_RS07810	0.59	+3.0
1,699,394	-		LRK54_RS07810	0.59	+0.5
1,699,401	+		LRK54_RS07810	0.60	+1.3
1,699,401	+		LRK54_RS07810	0.60	+0.3
1,699,401	+		LRK54_RS07810	0.60	-0.5
1,699,402	-		LRK54_RS07810	0.60	+0.1
1,699,402	-		LRK54_RS07810	0.60	+0.6
1,699,402	-		LRK54_RS07810	0.60	+0.2
1,699,402	-		LRK54_RS07810	0.60	-0.4
1,699,402	-		LRK54_RS07810	0.60	+0.2
1,699,402	-		LRK54_RS07810	0.60	-0.9
1,699,473	+		LRK54_RS07810	0.68	+0.1
1,699,473	+		LRK54_RS07810	0.68	-0.6
1,699,473	+		LRK54_RS07810	0.68	-0.2
1,699,473	+		LRK54_RS07810	0.68	-0.6
1,699,473	+		LRK54_RS07810	0.68	-0.9
1,699,473	+		LRK54_RS07810	0.68	-0.0
1,699,473	+		LRK54_RS07810	0.68	-1.2
1,699,473	+		LRK54_RS07810	0.68	-0.4
1,699,473	+		LRK54_RS07810	0.68	-2.4
1,699,473	+		LRK54_RS07810	0.68	-0.5
1,699,474	-		LRK54_RS07810	0.68	+1.0
1,699,474	-		LRK54_RS07810	0.68	-0.8
1,699,474	-		LRK54_RS07810	0.68	+0.6
1,699,474	-		LRK54_RS07810	0.68	+0.0
1,699,474	-		LRK54_RS07810	0.68	-0.6
1,699,474	-		LRK54_RS07810	0.68	+0.6
1,699,509	+		LRK54_RS07810	0.71	+1.3
1,699,509	+		LRK54_RS07810	0.71	-1.9
1,699,509	+		LRK54_RS07810	0.71	-2.0
1,699,509	+		LRK54_RS07810	0.71	-1.3
1,699,509	+		LRK54_RS07810	0.71	-0.7
1,699,509	+		LRK54_RS07810	0.71	-0.2
1,699,509	+		LRK54_RS07810	0.71	+0.3
1,699,509	+		LRK54_RS07810	0.71	+0.4
1,699,509	+		LRK54_RS07810	0.71	+1.0
1,699,510	-		LRK54_RS07810	0.72	-0.7
1,699,510	-		LRK54_RS07810	0.72	-0.7
1,699,510	-		LRK54_RS07810	0.72	+0.3
1,699,510	-		LRK54_RS07810	0.72	-0.0
1,699,510	-		LRK54_RS07810	0.72	-0.8
1,699,510	-		LRK54_RS07810	0.72	-0.2
1,699,510	-		LRK54_RS07810	0.72	+0.1
1,699,510	-		LRK54_RS07810	0.72	-0.0
1,699,510	-		LRK54_RS07810	0.72	-0.0
1,699,520	+		LRK54_RS07810	0.73	-1.4
1,699,520	+		LRK54_RS07810	0.73	+0.6
1,699,520	+		LRK54_RS07810	0.73	-1.0
1,699,521	-		LRK54_RS07810	0.73	-0.8
1,699,521	-		LRK54_RS07810	0.73	-3.3
1,699,521	-		LRK54_RS07810	0.73	-0.7
1,699,521	-		LRK54_RS07810	0.73	+0.1
1,699,521	-		LRK54_RS07810	0.73	+1.3
1,699,521	-		LRK54_RS07810	0.73	+1.3
1,699,581	+		LRK54_RS07810	0.79	+0.0
1,699,581	+		LRK54_RS07810	0.79	-0.3
1,699,581	+		LRK54_RS07810	0.79	-0.3
1,699,581	+		LRK54_RS07810	0.79	-0.2
1,699,581	+		LRK54_RS07810	0.79	+1.3
1,699,581	+		LRK54_RS07810	0.79	+0.6
1,699,581	+		LRK54_RS07810	0.79	+0.4
1,699,582	-		LRK54_RS07810	0.79	+1.2
1,699,582	-		LRK54_RS07810	0.79	-0.2
1,699,582	-		LRK54_RS07810	0.79	+1.0
1,699,582	-		LRK54_RS07810	0.79	-1.0
1,699,582	-		LRK54_RS07810	0.79	-1.6
1,699,582	-		LRK54_RS07810	0.79	-0.8
1,699,582	-		LRK54_RS07810	0.79	-1.2
1,699,641	+		LRK54_RS07810	0.85	+0.4
1,699,641	+		LRK54_RS07810	0.85	+1.0
1,699,642	-		LRK54_RS07810	0.85	+1.5
1,699,642	-		LRK54_RS07810	0.85	-1.0
1,699,642	-		LRK54_RS07810	0.85	-0.3
1,699,642	-		LRK54_RS07810	0.85	+2.3