Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07750

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
1,683,336	+		LRK54_RS07740	0.67	-0.6
1,683,336	+		LRK54_RS07740	0.67	+0.1
1,683,336	+		LRK54_RS07740	0.67	-0.9
1,683,336	+		LRK54_RS07740	0.67	-0.0
1,683,336	+		LRK54_RS07740	0.67	-0.7
1,683,336	+		LRK54_RS07740	0.67	-0.2
1,683,336	+		LRK54_RS07740	0.67	+0.7
1,683,337	-		LRK54_RS07740	0.67	+0.6
1,683,337	-		LRK54_RS07740	0.67	-0.3
1,683,337	-		LRK54_RS07740	0.67	-0.3
1,683,337	-		LRK54_RS07740	0.67	+0.4
1,683,348	+		LRK54_RS07740	0.68	+1.8
1,683,349	-		LRK54_RS07740	0.68	-1.7
1,683,349	-		LRK54_RS07740	0.68	+0.4
1,683,633	+		LRK54_RS07740	0.90	+0.4
1,683,634	-				+0.2
1,683,634	-				+0.7
1,683,642	+				-0.4
1,683,642	+				-0.4
1,683,642	+				-0.7
1,683,642	+				+0.4
1,683,642	+				+0.3
1,683,642	+				+0.4
1,683,642	+				-0.0
1,683,642	+				-0.1
1,683,642	+				+0.7
1,683,642	+				+0.2
1,683,642	+				+0.3
1,683,642	+				-0.2
1,683,642	+				-0.3
1,683,642	+				-0.1
1,683,643	-				-0.4
1,683,643	-				+0.1
1,683,643	-				+0.8
1,683,643	-				+0.1
1,683,643	-				-1.1
1,683,643	-				+0.4
1,683,643	-				+0.7
1,683,643	-				+0.1
1,683,643	-				-0.3
1,683,643	-				+0.8
1,683,643	-				+1.3
1,683,643	-				+0.2
1,683,643	-				+0.6
1,683,643	-				-0.3
1,683,643	-				-1.1
1,683,643	-				-0.5
1,683,643	-				+0.4
1,683,643	-				-0.0
1,683,684	+				+1.3
1,683,684	+				-0.3
1,683,684	+				-0.2
1,683,684	+				-0.0
1,683,684	+				+0.7
1,683,685	-				+2.9
1,683,685	-				+1.2
1,683,685	-				+0.2
1,684,077	+				+0.1
1,684,077	+				+0.1
1,684,077	+				+2.3
1,684,077	+				-0.1
1,684,077	+				-0.8
1,684,077	+				+0.7
1,684,077	+				+0.2
1,684,077	+				+1.3
1,684,077	+				-0.1
1,684,077	+				+1.4
1,684,077	+				+0.2
1,684,077	+				-0.6
1,684,077	+				+0.4
1,684,077	+				+0.2
1,684,077	+				+0.5
1,684,077	+				-0.1
1,684,077	+				+0.7
1,684,077	+				-0.1
1,684,077	+				-0.0
1,684,077	+				-0.6
1,684,077	+				-0.1
1,684,077	+				+0.9
1,684,077	+				+0.8
1,684,077	+				+1.0
1,684,077	+				-0.1
1,684,077	+				-1.1
1,684,077	+				+2.1
1,684,077	+				+0.7
1,684,077	+				+0.6
1,684,077	+				-0.0
1,684,077	+				+0.2
1,684,077	+				+2.3
1,684,077	+				+1.5
1,684,077	+				+1.6
1,684,077	+				-1.7
1,684,077	+				+1.1
1,684,077	+				-0.0
1,684,077	+				-0.1
1,684,078	-				-0.7
1,684,078	-				-0.7
1,684,078	-				-0.8
1,684,078	-				-0.2
1,684,078	-				-0.4
1,684,078	-				-0.2
1,684,078	-				-0.9
1,684,078	-				+0.4
1,684,078	-				-0.3
1,684,078	-				+1.3
1,684,078	-				-0.1
1,684,078	-				+0.5
1,684,078	-				-0.6
1,684,078	-				-1.6
1,684,078	-				-0.7
1,684,078	-				+0.3
1,684,078	-				+0.1
1,684,078	-				-0.0
1,684,078	-				-0.6
1,684,078	-				-0.7
1,684,078	-				+1.1
1,684,078	-				+1.2
1,684,078	-				-0.2
1,684,080	+				-0.5
1,684,080	+				+0.1
1,684,080	+				+0.0
1,684,080	+				-0.7
1,684,080	+				-0.0
1,684,080	+				+1.7
1,684,080	+				+0.4
1,684,080	+				-0.0
1,684,080	+				+0.1
1,684,080	+				+0.6
1,684,080	+				+0.4
1,684,080	+				-0.1
1,684,080	+				-1.0
1,684,080	+				-0.0
1,684,080	+				+1.6
1,684,080	+				-0.2
1,684,080	+				-1.4
1,684,080	+				+0.2
1,684,080	+				+0.3
1,684,080	+				+0.2
1,684,080	+				-0.2
1,684,080	+				-0.6
1,684,080	+				+0.9
1,684,080	+				-0.1
1,684,080	+				-1.8
1,684,080	+				+1.1
1,684,080	+				+1.5
1,684,080	+				+1.2
1,684,080	+				-0.5
1,684,080	+				+2.0
1,684,080	+				-0.3
1,684,080	+				+0.9
1,684,080	+				-2.2
1,684,080	+				-0.3
1,684,080	+				+0.4
1,684,080	+				+0.4
1,684,080	+				+0.3
1,684,081	-				+0.3
1,684,081	-				-0.1
1,684,081	-				-0.9
1,684,081	-				-0.4
1,684,081	-				-0.3
1,684,081	-				-0.2
1,684,081	-				-2.0
1,684,081	-				-0.7
1,684,081	-				+1.5
1,684,081	-				+2.6
1,684,081	-				-2.1
1,684,081	-				-0.6
1,684,081	-				+0.1
1,684,081	-				-0.3
1,684,081	-				+0.7
1,684,081	-				-0.2
1,684,081	-				+0.1
1,684,081	-				+0.4
1,684,081	-				+0.7
1,684,081	-				+0.3
1,684,081	-				-0.2
1,684,081	-				-0.9
1,684,081	-				+0.8
1,684,081	-				+0.1
1,684,081	-				+0.2
1,684,081	-				-0.5
1,684,081	-				-0.7
1,684,081	-				+0.7
1,684,081	-				+2.3
1,684,081	-				+1.4
1,684,081	-				+1.3
1,684,081	-				-1.8
1,684,081	-				+1.8
1,684,081	-				-2.3
1,684,081	-				+0.9
1,684,271	+		LRK54_RS07750	0.51	+0.2
1,684,317	+		LRK54_RS07750	0.63	+1.5
1,684,317	+		LRK54_RS07750	0.63	+0.8
1,684,317	+		LRK54_RS07750	0.63	-0.9
1,684,317	+		LRK54_RS07750	0.63	-0.5
1,684,318	-		LRK54_RS07750	0.64	+0.7
1,684,318	-		LRK54_RS07750	0.64	-0.7
1,684,318	-		LRK54_RS07750	0.64	-0.4
1,684,318	-		LRK54_RS07750	0.64	-0.2
1,684,318	-		LRK54_RS07750	0.64	-0.9
1,684,318	-		LRK54_RS07750	0.64	+0.3
1,684,318	-		LRK54_RS07750	0.64	+0.2
1,684,318	-		LRK54_RS07750	0.64	+1.1
1,684,318	-		LRK54_RS07750	0.64	-0.3
1,684,802	+		LRK54_RS07755	0.31	+0.8
1,684,802	+		LRK54_RS07755	0.31	-1.4
1,684,802	+		LRK54_RS07755	0.31	-1.0
1,684,802	+		LRK54_RS07755	0.31	-0.0
1,684,802	+		LRK54_RS07755	0.31	+1.1
1,684,802	+		LRK54_RS07755	0.31	+0.4
1,684,802	+		LRK54_RS07755	0.31	-0.0
1,684,802	+		LRK54_RS07755	0.31	-0.2
1,684,802	+		LRK54_RS07755	0.31	-1.1
1,684,802	+		LRK54_RS07755	0.31	+0.2
1,684,802	+		LRK54_RS07755	0.31	-1.2
1,684,802	+		LRK54_RS07755	0.31	+1.0
1,684,802	+		LRK54_RS07755	0.31	+0.1
1,684,802	+		LRK54_RS07755	0.31	-0.6
1,684,802	+		LRK54_RS07755	0.31	+1.5
1,684,802	+		LRK54_RS07755	0.31	-0.3
1,684,802	+		LRK54_RS07755	0.31	+0.3
1,684,802	+		LRK54_RS07755	0.31	-0.1
1,684,802	+		LRK54_RS07755	0.31	-1.0
1,684,802	+		LRK54_RS07755	0.31	+0.4
1,684,802	+		LRK54_RS07755	0.31	-0.6
1,684,803	-		LRK54_RS07755	0.31	-1.7
1,684,803	-		LRK54_RS07755	0.31	-0.5
1,684,803	-		LRK54_RS07755	0.31	-0.1
1,684,803	-		LRK54_RS07755	0.31	-1.0
1,684,803	-		LRK54_RS07755	0.31	+1.0
1,684,803	-		LRK54_RS07755	0.31	-1.1
1,684,803	-		LRK54_RS07755	0.31	+0.3
1,684,803	-		LRK54_RS07755	0.31	-0.7
1,684,803	-		LRK54_RS07755	0.31	+0.5
1,684,803	-		LRK54_RS07755	0.31	-0.7
1,684,803	-		LRK54_RS07755	0.31	+0.7
1,684,803	-		LRK54_RS07755	0.31	+0.7
1,684,803	-		LRK54_RS07755	0.31	-0.8
1,684,803	-		LRK54_RS07755	0.31	-0.7
1,684,803	-		LRK54_RS07755	0.31	+0.5
1,684,844	+		LRK54_RS07755	0.35	-1.2
1,684,844	+		LRK54_RS07755	0.35	-0.0
1,684,845	-		LRK54_RS07755	0.35	+0.7
1,684,856	+		LRK54_RS07755	0.36	-0.0
1,684,856	+		LRK54_RS07755	0.36	+0.1
1,684,856	+		LRK54_RS07755	0.36	+0.3
1,684,856	+		LRK54_RS07755	0.36	+0.1
1,684,856	+		LRK54_RS07755	0.36	+1.0
1,684,856	+		LRK54_RS07755	0.36	-0.5
1,684,857	-		LRK54_RS07755	0.36	-0.9
1,684,857	-		LRK54_RS07755	0.36	-0.2
1,684,857	-		LRK54_RS07755	0.36	-0.9
1,684,857	-		LRK54_RS07755	0.36	-0.9
1,684,857	-		LRK54_RS07755	0.36	+0.9
1,684,857	-		LRK54_RS07755	0.36	+0.4
1,684,857	-		LRK54_RS07755	0.36	-0.8
1,684,857	-		LRK54_RS07755	0.36	+0.8
1,684,857	-		LRK54_RS07755	0.36	+0.3
1,684,857	-		LRK54_RS07755	0.36	+1.2
1,684,857	-		LRK54_RS07755	0.36	-0.0
1,684,857	-		LRK54_RS07755	0.36	-0.6
1,684,857	-		LRK54_RS07755	0.36	-0.6
1,684,964	+		LRK54_RS07755	0.46	-0.2
1,684,964	+		LRK54_RS07755	0.46	+0.4
1,684,964	+		LRK54_RS07755	0.46	+1.5
1,684,964	+		LRK54_RS07755	0.46	+0.3
1,684,964	+		LRK54_RS07755	0.46	+1.1
1,684,964	+		LRK54_RS07755	0.46	+0.4
1,684,964	+		LRK54_RS07755	0.46	-1.0
1,684,964	+		LRK54_RS07755	0.46	+0.5
1,684,964	+		LRK54_RS07755	0.46	+1.0
1,684,964	+		LRK54_RS07755	0.46	+1.1
1,684,964	+		LRK54_RS07755	0.46	-0.5
1,684,964	+		LRK54_RS07755	0.46	-1.2
1,684,964	+		LRK54_RS07755	0.46	-0.9
1,684,964	+		LRK54_RS07755	0.46	+0.7
1,684,964	+		LRK54_RS07755	0.46	-0.3
1,684,965	-		LRK54_RS07755	0.46	-0.0
1,684,965	-		LRK54_RS07755	0.46	+0.5
1,684,965	-		LRK54_RS07755	0.46	+1.0
1,684,965	-		LRK54_RS07755	0.46	+1.1
1,684,965	-		LRK54_RS07755	0.46	-0.2
1,684,965	-		LRK54_RS07755	0.46	+0.3
1,684,965	-		LRK54_RS07755	0.46	-0.8
1,684,965	-		LRK54_RS07755	0.46	-1.4
1,684,965	-		LRK54_RS07755	0.46	-0.0
1,684,965	-		LRK54_RS07755	0.46	+1.2
1,684,965	-		LRK54_RS07755	0.46	-0.6
1,684,965	-		LRK54_RS07755	0.46	+0.9
1,684,965	-		LRK54_RS07755	0.46	-0.8
1,684,965	-		LRK54_RS07755	0.46	-1.1
1,684,965	-		LRK54_RS07755	0.46	-0.3
1,684,965	-		LRK54_RS07755	0.46	+0.9
1,684,965	-		LRK54_RS07755	0.46	-0.3
1,685,031	+		LRK54_RS07755	0.52	+0.2
1,685,031	+		LRK54_RS07755	0.52	+0.2
1,685,032	-		LRK54_RS07755	0.52	-0.3
1,685,204	+		LRK54_RS07755	0.68	-0.0
1,685,205	-		LRK54_RS07755	0.68	-0.6
1,685,205	-		LRK54_RS07755	0.68	-0.5
1,685,271	-		LRK54_RS07755	0.74	+0.2
1,685,372	+		LRK54_RS07755	0.83	-0.1
1,685,372	+		LRK54_RS07755	0.83	-0.1
1,685,372	+		LRK54_RS07755	0.83	+1.5
1,685,372	+		LRK54_RS07755	0.83	+0.5
1,685,372	+		LRK54_RS07755	0.83	+0.7
1,685,373	-		LRK54_RS07755	0.83	+0.1
1,685,373	-		LRK54_RS07755	0.83	-1.2
1,685,373	-		LRK54_RS07755	0.83	-1.1
1,685,373	-		LRK54_RS07755	0.83	+0.4
1,685,373	-		LRK54_RS07755	0.83	+0.1