Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07250

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
1,555,257	+		LRK54_RS07245	0.62	-0.9
1,555,257	+		LRK54_RS07245	0.62	+2.1
1,555,257	+		LRK54_RS07245	0.62	-0.9
1,555,257	+		LRK54_RS07245	0.62	-0.7
1,555,257	+		LRK54_RS07245	0.62	-0.2
1,555,257	+		LRK54_RS07245	0.62	-0.4
1,555,257	+		LRK54_RS07245	0.62	+0.7
1,555,257	+		LRK54_RS07245	0.62	+1.2
1,555,257	+		LRK54_RS07245	0.62	+0.7
1,555,257	+		LRK54_RS07245	0.62	+0.0
1,555,257	+		LRK54_RS07245	0.62	-0.0
1,555,257	+		LRK54_RS07245	0.62	+1.7
1,555,257	+		LRK54_RS07245	0.62	-0.0
1,555,257	+		LRK54_RS07245	0.62	-0.5
1,555,257	+		LRK54_RS07245	0.62	+0.1
1,555,257	+		LRK54_RS07245	0.62	+0.6
1,555,257	+		LRK54_RS07245	0.62	-0.5
1,555,257	+		LRK54_RS07245	0.62	+1.0
1,555,257	+		LRK54_RS07245	0.62	+2.3
1,555,257	+		LRK54_RS07245	0.62	+0.2
1,555,257	+		LRK54_RS07245	0.62	+0.3
1,555,257	+		LRK54_RS07245	0.62	-0.8
1,555,257	+		LRK54_RS07245	0.62	-0.2
1,555,257	+		LRK54_RS07245	0.62	+1.0
1,555,257	+		LRK54_RS07245	0.62	-0.6
1,555,257	+		LRK54_RS07245	0.62	-0.1
1,555,257	+		LRK54_RS07245	0.62	-1.0
1,555,257	+		LRK54_RS07245	0.62	-0.5
1,555,257	+		LRK54_RS07245	0.62	+0.4
1,555,257	+		LRK54_RS07245	0.62	-0.1
1,555,257	+		LRK54_RS07245	0.62	-1.0
1,555,257	+		LRK54_RS07245	0.62	+2.3
1,555,257	+		LRK54_RS07245	0.62	-0.4
1,555,257	+		LRK54_RS07245	0.62	+0.1
1,555,257	+		LRK54_RS07245	0.62	-1.1
1,555,257	+		LRK54_RS07245	0.62	-0.8
1,555,257	+		LRK54_RS07245	0.62	+1.5
1,555,257	+		LRK54_RS07245	0.62	-0.1
1,555,257	+		LRK54_RS07245	0.62	+0.7
1,555,257	+		LRK54_RS07245	0.62	-1.2
1,555,257	+		LRK54_RS07245	0.62	+1.0
1,555,257	+		LRK54_RS07245	0.62	+0.3
1,555,258	-		LRK54_RS07245	0.62	+0.8
1,555,258	-		LRK54_RS07245	0.62	-0.3
1,555,258	-		LRK54_RS07245	0.62	-0.2
1,555,258	-		LRK54_RS07245	0.62	+2.3
1,555,258	-		LRK54_RS07245	0.62	+0.1
1,555,258	-		LRK54_RS07245	0.62	+0.5
1,555,258	-		LRK54_RS07245	0.62	-1.1
1,555,258	-		LRK54_RS07245	0.62	+0.1
1,555,258	-		LRK54_RS07245	0.62	+0.6
1,555,258	-		LRK54_RS07245	0.62	+0.3
1,555,258	-		LRK54_RS07245	0.62	-0.1
1,555,258	-		LRK54_RS07245	0.62	-0.2
1,555,258	-		LRK54_RS07245	0.62	+0.1
1,555,258	-		LRK54_RS07245	0.62	+2.1
1,555,258	-		LRK54_RS07245	0.62	-1.0
1,555,258	-		LRK54_RS07245	0.62	-0.7
1,555,258	-		LRK54_RS07245	0.62	-0.2
1,555,258	-		LRK54_RS07245	0.62	+0.7
1,555,258	-		LRK54_RS07245	0.62	+1.3
1,555,258	-		LRK54_RS07245	0.62	+1.1
1,555,258	-		LRK54_RS07245	0.62	+0.1
1,555,258	-		LRK54_RS07245	0.62	-0.1
1,555,258	-		LRK54_RS07245	0.62	+0.4
1,555,258	-		LRK54_RS07245	0.62	-0.3
1,555,258	-		LRK54_RS07245	0.62	-0.0
1,555,258	-		LRK54_RS07245	0.62	-0.4
1,555,258	-		LRK54_RS07245	0.62	-1.2
1,555,258	-		LRK54_RS07245	0.62	+0.0
1,555,258	-		LRK54_RS07245	0.62	+0.3
1,555,258	-		LRK54_RS07245	0.62	-0.4
1,555,368	+		LRK54_RS07245	0.67	+0.3
1,555,368	+		LRK54_RS07245	0.67	+0.2
1,555,369	-		LRK54_RS07245	0.67	-0.5
1,555,369	-		LRK54_RS07245	0.67	+0.8
1,555,369	-		LRK54_RS07245	0.67	-0.6
1,555,416	+		LRK54_RS07245	0.70	-0.1
1,555,416	+		LRK54_RS07245	0.70	+0.5
1,555,416	+		LRK54_RS07245	0.70	-0.3
1,555,416	+		LRK54_RS07245	0.70	-0.7
1,555,416	+		LRK54_RS07245	0.70	-0.9
1,555,416	+		LRK54_RS07245	0.70	+0.9
1,555,416	+		LRK54_RS07245	0.70	-1.3
1,555,416	+		LRK54_RS07245	0.70	-1.1
1,555,416	+		LRK54_RS07245	0.70	+1.2
1,555,416	+		LRK54_RS07245	0.70	-0.2
1,555,416	+		LRK54_RS07245	0.70	+0.6
1,555,417	-		LRK54_RS07245	0.70	-0.4
1,555,417	-		LRK54_RS07245	0.70	-0.0
1,555,417	-		LRK54_RS07245	0.70	-1.5
1,555,417	-		LRK54_RS07245	0.70	+1.3
1,555,417	-		LRK54_RS07245	0.70	-0.5
1,555,417	-		LRK54_RS07245	0.70	-0.5
1,555,417	-		LRK54_RS07245	0.70	-0.2
1,555,417	-		LRK54_RS07245	0.70	-0.9
1,555,417	-		LRK54_RS07245	0.70	-0.8
1,555,417	-		LRK54_RS07245	0.70	+1.7
1,555,417	-		LRK54_RS07245	0.70	+0.3
1,555,417	-		LRK54_RS07245	0.70	-0.1
1,555,417	-		LRK54_RS07245	0.70	-1.2
1,555,417	-		LRK54_RS07245	0.70	+2.3
1,555,417	-		LRK54_RS07245	0.70	-1.4
1,555,417	-		LRK54_RS07245	0.70	-0.9
1,555,497	+		LRK54_RS07245	0.74	+0.1
1,555,497	+		LRK54_RS07245	0.74	-0.3
1,555,497	+		LRK54_RS07245	0.74	-0.3
1,555,497	+		LRK54_RS07245	0.74	-0.7
1,555,497	+		LRK54_RS07245	0.74	-0.0
1,555,497	+		LRK54_RS07245	0.74	-1.0
1,555,497	+		LRK54_RS07245	0.74	-0.5
1,555,641	+		LRK54_RS07245	0.81	+0.2
1,555,641	+		LRK54_RS07245	0.81	-0.3
1,555,641	+		LRK54_RS07245	0.81	+0.6
1,555,641	+		LRK54_RS07245	0.81	+0.1
1,555,641	+		LRK54_RS07245	0.81	-0.9
1,555,641	+		LRK54_RS07245	0.81	+2.8
1,555,641	+		LRK54_RS07245	0.81	-0.1
1,555,641	+		LRK54_RS07245	0.81	-0.3
1,555,641	+		LRK54_RS07245	0.81	+0.3
1,555,641	+		LRK54_RS07245	0.81	+0.5
1,555,641	+		LRK54_RS07245	0.81	+0.5
1,555,641	+		LRK54_RS07245	0.81	+0.2
1,555,642	-		LRK54_RS07245	0.81	+0.7
1,555,642	-		LRK54_RS07245	0.81	-0.7
1,555,642	-		LRK54_RS07245	0.81	-0.9
1,555,642	-		LRK54_RS07245	0.81	-0.0
1,555,642	-		LRK54_RS07245	0.81	-0.1
1,555,642	-		LRK54_RS07245	0.81	-0.3
1,555,642	-		LRK54_RS07245	0.81	-0.4
1,555,642	-		LRK54_RS07245	0.81	+0.3
1,555,642	-		LRK54_RS07245	0.81	+0.8
1,555,642	-		LRK54_RS07245	0.81	-0.6
1,555,642	-		LRK54_RS07245	0.81	-1.0
1,555,642	-		LRK54_RS07245	0.81	-1.6
1,555,642	-		LRK54_RS07245	0.81	-1.0
1,555,678	-		LRK54_RS07245	0.82	-0.1
1,555,678	-		LRK54_RS07245	0.82	-1.0
1,555,734	+		LRK54_RS07245	0.85	-0.3
1,555,734	+		LRK54_RS07245	0.85	-1.3
1,555,734	+		LRK54_RS07245	0.85	+0.1
1,555,734	+		LRK54_RS07245	0.85	+0.6
1,555,734	+		LRK54_RS07245	0.85	+0.3
1,555,734	+		LRK54_RS07245	0.85	-0.2
1,555,734	+		LRK54_RS07245	0.85	-0.3
1,555,734	+		LRK54_RS07245	0.85	-0.4
1,555,734	+		LRK54_RS07245	0.85	+0.9
1,555,734	+		LRK54_RS07245	0.85	-0.7
1,555,735	-		LRK54_RS07245	0.85	-0.6
1,555,735	-		LRK54_RS07245	0.85	+0.4
1,555,735	-		LRK54_RS07245	0.85	-1.5
1,555,735	-		LRK54_RS07245	0.85	+0.7
1,555,735	-		LRK54_RS07245	0.85	-1.3
1,555,735	-		LRK54_RS07245	0.85	-0.9
1,555,735	-		LRK54_RS07245	0.85	+0.2
1,555,735	-		LRK54_RS07245	0.85	-0.0
1,555,735	-		LRK54_RS07245	0.85	+0.3
1,555,735	-		LRK54_RS07245	0.85	+0.2
1,555,735	-		LRK54_RS07245	0.85	+0.7
1,555,735	-		LRK54_RS07245	0.85	-1.6
1,555,735	-		LRK54_RS07245	0.85	-0.9
1,555,735	-		LRK54_RS07245	0.85	+1.3
1,555,735	-		LRK54_RS07245	0.85	-0.2
1,555,836	+				+2.6
1,555,836	+				-0.3
1,555,836	+				-0.6
1,555,836	+				-0.3
1,555,836	+				+1.2
1,555,836	+				-1.2
1,555,836	+				+0.5
1,555,836	+				-1.0
1,555,836	+				+0.4
1,555,836	+				+1.5
1,555,836	+				+0.7
1,555,836	+				+1.1
1,555,836	+				+0.6
1,555,836	+				+0.7
1,555,837	-				+1.3
1,555,837	-				+1.6
1,555,837	-				+0.4
1,555,837	-				+1.0
1,555,837	-				+1.1
1,555,837	-				-0.2
1,555,837	-				+0.3
1,555,837	-				-0.5
1,555,837	-				-1.5
1,555,837	-				+0.6
1,555,837	-				+0.7
1,555,837	-				-2.4
1,555,837	-				-0.1
1,555,837	-				+1.7
1,555,837	-				+0.8
1,555,837	-				-0.2
1,555,837	-				-0.7
1,555,837	-				-0.2
1,555,869	+				-0.9
1,555,869	+				+0.2
1,555,869	+				-0.3
1,555,869	+				+0.1
1,555,869	+				+0.3
1,555,869	+				-1.0
1,555,869	+				+0.3
1,555,869	+				+0.5
1,555,869	+				+1.8
1,555,869	+				-1.7
1,555,869	+				+0.0
1,555,869	+				-0.3
1,555,869	+				+0.6
1,555,869	+				+0.1
1,555,869	+				+0.7
1,555,869	+				+0.7
1,555,869	+				+1.3
1,555,869	+				-0.4
1,555,869	+				+0.7
1,555,869	+				+0.7
1,555,869	+				+0.5
1,555,869	+				+1.3
1,555,869	+				-0.4
1,555,870	-				+0.7
1,555,870	-				+0.9
1,555,870	-				+1.3
1,555,870	-				-0.1
1,555,870	-				+0.7
1,555,870	-				-0.0
1,555,870	-				+0.9
1,555,870	-				-2.2
1,555,870	-				+0.1
1,555,870	-				+1.6
1,555,870	-				+1.7
1,555,870	-				+0.2
1,555,870	-				-1.1
1,555,870	-				-1.0
1,555,870	-				+0.7
1,555,870	-				+0.9
1,555,870	-				+0.5
1,555,870	-				-0.3
1,555,870	-				-0.3
1,555,870	-				+0.8
1,555,870	-				-0.0
1,555,870	-				+1.6
1,555,870	-				-0.3
1,555,870	-				+0.7
1,555,870	-				+1.3
1,555,870	-				-0.3
1,555,870	-				-0.0
1,555,870	-				+0.2
1,555,870	-				+0.2
1,555,870	-				-0.4
1,555,870	-				+0.1
1,555,870	-				-1.8
1,555,938	+				-1.2
1,555,938	+				-2.1
1,555,938	+				+0.1
1,555,938	+				-0.1
1,555,938	+				-0.2
1,555,938	+				-0.2
1,555,938	+				-0.0
1,555,938	+				-1.1
1,555,938	+				+1.0
1,555,938	+				+0.4
1,555,938	+				+0.5
1,555,938	+				+0.3
1,555,938	+				-0.6
1,555,938	+				+1.3
1,555,938	+				+0.3
1,555,938	+				+0.6
1,555,939	-				-0.0
1,555,939	-				-1.3
1,555,939	-				-0.8
1,555,939	-				-0.2
1,556,426	+		LRK54_RS07250	0.40	-0.1
1,556,426	+		LRK54_RS07250	0.40	-0.6
1,556,426	+				+0.6
1,556,426	+		LRK54_RS07250	0.40	-0.2
1,556,426	+		LRK54_RS07250	0.40	+0.2
1,556,426	+		LRK54_RS07250	0.40	-0.1
1,556,426	+		LRK54_RS07250	0.40	+0.5
1,556,426	+		LRK54_RS07250	0.40	-0.1
1,556,426	+		LRK54_RS07250	0.40	+1.0
1,556,426	+		LRK54_RS07250	0.40	+0.2
1,556,426	+		LRK54_RS07250	0.40	-0.8
1,556,427	-		LRK54_RS07250	0.40	+0.7
1,556,427	-		LRK54_RS07250	0.40	-0.1
1,556,427	-		LRK54_RS07250	0.40	+0.5
1,556,427	-		LRK54_RS07250	0.40	+0.7
1,556,427	-		LRK54_RS07250	0.40	-0.3
1,556,427	-		LRK54_RS07250	0.40	-0.1
1,556,427	-		LRK54_RS07250	0.40	-0.9
1,556,489	+		LRK54_RS07250	0.46	-0.3
1,556,489	+		LRK54_RS07250	0.46	+0.6
1,556,489	+		LRK54_RS07250	0.46	-0.4
1,556,489	+		LRK54_RS07250	0.46	-0.1
1,556,489	+		LRK54_RS07250	0.46	-1.5
1,556,489	+		LRK54_RS07250	0.46	+0.5
1,556,489	+		LRK54_RS07250	0.46	+1.7
1,556,489	+		LRK54_RS07250	0.46	+0.4
1,556,489	+		LRK54_RS07250	0.46	-0.6
1,556,489	+		LRK54_RS07250	0.46	-0.9
1,556,489	+		LRK54_RS07250	0.46	+0.2
1,556,489	+		LRK54_RS07250	0.46	-0.1
1,556,489	+		LRK54_RS07250	0.46	+0.5
1,556,489	+		LRK54_RS07250	0.46	+0.1
1,556,489	+		LRK54_RS07250	0.46	+0.3
1,556,489	+		LRK54_RS07250	0.46	+1.4
1,556,489	+		LRK54_RS07250	0.46	-2.1
1,556,490	-		LRK54_RS07250	0.46	-0.1
1,556,490	-		LRK54_RS07250	0.46	-0.3
1,556,490	-		LRK54_RS07250	0.46	-0.1
1,556,490	-		LRK54_RS07250	0.46	-1.1
1,556,490	-		LRK54_RS07250	0.46	-0.5
1,556,490	-		LRK54_RS07250	0.46	-0.6
1,556,490	-		LRK54_RS07250	0.46	-1.3
1,556,490	-		LRK54_RS07250	0.46	-0.3
1,556,490	-		LRK54_RS07250	0.46	+0.6
1,556,490	-		LRK54_RS07250	0.46	+1.3
1,556,490	-		LRK54_RS07250	0.46	+2.5
1,556,490	-		LRK54_RS07250	0.46	+0.3
1,556,490	-		LRK54_RS07250	0.46	+0.2
1,556,490	-		LRK54_RS07250	0.46	+1.4
1,556,490	-		LRK54_RS07250	0.46	+1.5
1,556,490	-		LRK54_RS07250	0.46	+0.6
1,556,490	-		LRK54_RS07250	0.46	+0.3
1,556,490	-		LRK54_RS07250	0.46	-1.0
1,556,490	-		LRK54_RS07250	0.46	-0.4
1,556,490	-		LRK54_RS07250	0.46	+1.9
1,556,490	-		LRK54_RS07250	0.46	+0.7
1,556,490	-		LRK54_RS07250	0.46	-0.5
1,556,684	+		LRK54_RS07250	0.67	+0.3
1,556,684	+		LRK54_RS07250	0.67	+0.3
1,556,684	+		LRK54_RS07250	0.67	+0.7
1,556,684	+		LRK54_RS07250	0.67	-1.6
1,556,684	+		LRK54_RS07250	0.67	+0.7
1,556,684	+		LRK54_RS07250	0.67	-0.7
1,556,684	+		LRK54_RS07250	0.67	+0.6
1,556,684	+		LRK54_RS07250	0.67	+0.3
1,556,684	+		LRK54_RS07250	0.67	-0.0
1,556,684	+		LRK54_RS07250	0.67	-0.1
1,556,684	+		LRK54_RS07250	0.67	+0.4
1,556,684	+		LRK54_RS07250	0.67	+0.6
1,556,684	+		LRK54_RS07250	0.67	+0.2
1,556,684	+		LRK54_RS07250	0.67	-0.1
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1,557,868	-				-0.6