Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07200

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
1,545,474	+		LRK54_RS07190	0.82	-0.2
1,545,474	+		LRK54_RS07190	0.82	+0.4
1,545,474	+		LRK54_RS07190	0.82	+0.6
1,545,474	+		LRK54_RS07190	0.82	+2.9
1,545,474	+		LRK54_RS07190	0.82	-0.3
1,545,474	+		LRK54_RS07190	0.82	-1.5
1,545,474	+		LRK54_RS07190	0.82	-0.9
1,545,474	+		LRK54_RS07190	0.82	-1.1
1,545,474	+		LRK54_RS07190	0.82	+0.7
1,545,474	+		LRK54_RS07190	0.82	+1.3
1,545,474	+		LRK54_RS07190	0.82	-0.0
1,545,474	+		LRK54_RS07190	0.82	+0.8
1,545,474	+		LRK54_RS07190	0.82	+0.1
1,545,474	+		LRK54_RS07190	0.82	+0.4
1,545,474	+		LRK54_RS07190	0.82	+1.7
1,545,474	+		LRK54_RS07190	0.82	+0.9
1,545,474	+		LRK54_RS07190	0.82	+0.6
1,545,474	+		LRK54_RS07190	0.82	+0.7
1,545,474	+		LRK54_RS07190	0.82	+0.3
1,545,475	-		LRK54_RS07190	0.82	-0.5
1,545,475	-		LRK54_RS07190	0.82	-0.3
1,545,475	-		LRK54_RS07190	0.82	-0.6
1,545,475	-		LRK54_RS07190	0.82	+0.1
1,545,475	-		LRK54_RS07190	0.82	-0.1
1,545,475	-		LRK54_RS07190	0.82	-1.5
1,545,475	-		LRK54_RS07190	0.82	-0.4
1,545,475	-		LRK54_RS07190	0.82	+0.4
1,545,475	-		LRK54_RS07190	0.82	+0.8
1,545,475	-		LRK54_RS07190	0.82	+0.7
1,545,475	-		LRK54_RS07190	0.82	-0.6
1,545,492	+		LRK54_RS07190	0.83	-0.1
1,545,492	+		LRK54_RS07190	0.83	-0.8
1,545,493	-		LRK54_RS07190	0.83	-0.0
1,545,493	-		LRK54_RS07190	0.83	-0.9
1,545,493	-		LRK54_RS07190	0.83	+1.2
1,545,493	-		LRK54_RS07190	0.83	-1.6
1,545,493	-		LRK54_RS07190	0.83	+0.1
1,545,493	-		LRK54_RS07190	0.83	-1.1
1,545,493	-		LRK54_RS07190	0.83	-0.5
1,545,493	-		LRK54_RS07190	0.83	+0.4
1,545,493	-		LRK54_RS07190	0.83	-0.0
1,545,609	+				+0.4
1,545,609	+				+0.9
1,545,609	+				+0.3
1,545,610	-				+1.3
1,545,610	-				+0.2
1,545,610	-				-1.1
1,545,610	-				+0.6
1,545,610	-				+0.5
1,545,627	+				+0.0
1,545,627	+				-1.1
1,545,627	+				-0.2
1,545,627	+				+0.1
1,545,627	+				+0.7
1,545,627	+				-0.5
1,545,627	+				+1.0
1,545,627	+				+0.5
1,545,627	+				+1.9
1,545,627	+				+0.9
1,545,627	+				+0.1
1,545,627	+				-0.1
1,545,628	-				+0.4
1,545,628	-				+0.3
1,545,628	-				+0.1
1,545,628	-				-2.9
1,545,628	-				-1.1
1,545,628	-				-0.4
1,545,887	+		LRK54_RS07195	0.34	-1.3
1,545,887	+		LRK54_RS07195	0.34	-1.3
1,546,192	+				+0.1
1,546,192	+				+0.5
1,546,192	+				+0.5
1,546,192	+				+0.8
1,546,192	+				-0.5
1,546,192	+				+0.4
1,546,192	+				-0.9
1,546,192	+				+1.7
1,546,192	+				-0.0
1,546,192	+				+0.1
1,546,192	+				-2.2
1,546,192	+				-0.3
1,546,192	+				+0.3
1,546,192	+				+0.6
1,546,193	-				+0.1
1,546,193	-				-0.9
1,546,193	-				+0.2
1,546,193	-				+0.4
1,546,193	-				-0.9
1,546,193	-				+0.9
1,546,193	-				+0.1
1,546,193	-				+0.7
1,546,193	-				+1.1
1,546,193	-				+0.5
1,546,193	-				+0.7
1,546,193	-				+0.8
1,546,193	-				-1.0
1,546,193	-				+0.4
1,546,193	-				+0.1
1,546,193	-				+1.0
1,546,193	-				+0.5
1,546,193	-				-0.3
1,546,193	-				+0.3
1,546,193	-				+0.4
1,546,193	-				-0.1
1,546,193	-				+0.7
1,546,193	-				-0.5
1,546,193	-				+0.5
1,546,193	-				+0.4
1,546,391	+				+0.5
1,546,391	+				-0.3
1,546,391	+				+0.9
1,546,391	+				+1.1
1,546,391	+				+0.1
1,546,391	+				+0.1
1,546,391	+				-2.2
1,546,391	+				+1.0
1,546,391	+				-0.3
1,546,391	+				+1.1
1,546,391	+				-0.5
1,546,391	+				-0.1
1,546,391	+				-0.0
1,546,391	+				-0.1
1,546,391	+				+0.8
1,546,391	+				+0.4
1,546,391	+				+0.6
1,546,391	+				+0.5
1,546,391	+				+0.7
1,546,392	-				-1.0
1,546,392	-				-0.2
1,546,392	-				-0.5
1,546,392	-				-0.2
1,546,392	-				+1.1
1,546,392	-				-0.0
1,546,392	-				-0.3
1,546,392	-				-0.6
1,546,392	-				-0.5
1,546,392	-				-0.7
1,546,392	-				-1.0
1,546,394	+				-0.3
1,546,394	+				+0.7
1,546,394	+				+0.5
1,546,394	+				-0.7
1,546,394	+				+1.0
1,546,394	+				+0.7
1,546,394	+				+1.9
1,546,394	+				+1.5
1,546,395	-				-1.0
1,546,395	-				+0.9
1,546,395	-				+0.4
1,546,395	-				+0.2
1,546,395	-				+1.7
1,546,395	-				+0.7
1,546,445	+				-0.3
1,546,445	+				-0.0
1,546,445	+				+0.9
1,546,446	-				+0.2
1,546,466	+				+0.7
1,546,466	+				-0.0
1,546,466	+				-0.6
1,546,466	+				+0.2
1,546,466	+				-1.7
1,546,467	-				-0.2
1,546,467	-				+0.1
1,546,467	-				+0.8
1,546,467	-				-0.9
1,546,553	+		LRK54_RS07200	0.27	+1.7
1,546,553	+		LRK54_RS07200	0.27	-0.1
1,546,553	+		LRK54_RS07200	0.27	+0.6
1,546,553	+		LRK54_RS07200	0.27	-0.0
1,546,553	+		LRK54_RS07200	0.27	-0.3
1,546,553	+		LRK54_RS07200	0.27	+0.7
1,546,554	-		LRK54_RS07200	0.27	-2.0
1,546,554	-		LRK54_RS07200	0.27	+1.6
1,546,554	-		LRK54_RS07200	0.27	-0.1
1,546,554	-		LRK54_RS07200	0.27	+0.9
1,546,554	-		LRK54_RS07200	0.27	-0.1
1,546,554	-		LRK54_RS07200	0.27	+0.3
1,546,554	-		LRK54_RS07200	0.27	+0.5
1,546,589	+		LRK54_RS07200	0.34	-0.1
1,546,589	+		LRK54_RS07200	0.34	+0.7
1,546,589	+		LRK54_RS07200	0.34	+0.3
1,546,589	+		LRK54_RS07200	0.34	+1.2
1,546,589	+		LRK54_RS07200	0.34	-0.1
1,546,589	+		LRK54_RS07200	0.34	+0.7
1,546,589	+		LRK54_RS07200	0.34	+1.2
1,546,589	+		LRK54_RS07200	0.34	+0.0
1,546,589	+		LRK54_RS07200	0.34	-1.0
1,546,589	+		LRK54_RS07200	0.34	+1.0
1,546,589	+		LRK54_RS07200	0.34	+0.6
1,546,589	+		LRK54_RS07200	0.34	-0.1
1,546,589	+		LRK54_RS07200	0.34	-1.1
1,546,589	+		LRK54_RS07200	0.34	+0.1
1,546,589	+		LRK54_RS07200	0.34	-0.1
1,546,589	+		LRK54_RS07200	0.34	-0.1
1,546,589	+		LRK54_RS07200	0.34	-2.4
1,546,589	+		LRK54_RS07200	0.34	+0.6
1,546,590	-		LRK54_RS07200	0.34	-2.0
1,546,590	-		LRK54_RS07200	0.34	+0.7
1,546,590	-		LRK54_RS07200	0.34	-0.3
1,546,590	-		LRK54_RS07200	0.34	-1.2
1,546,590	-		LRK54_RS07200	0.34	+1.3
1,546,590	-		LRK54_RS07200	0.34	+0.6
1,546,590	-		LRK54_RS07200	0.34	-0.8
1,546,590	-		LRK54_RS07200	0.34	-0.0
1,546,590	-		LRK54_RS07200	0.34	-0.0
1,546,590	-		LRK54_RS07200	0.34	+0.2
1,546,590	-		LRK54_RS07200	0.34	+0.7
1,546,590	-		LRK54_RS07200	0.34	+0.5
1,546,590	-		LRK54_RS07200	0.34	+0.1
1,546,590	-		LRK54_RS07200	0.34	+0.9
1,546,590	-		LRK54_RS07200	0.34	+1.0
1,546,590	-		LRK54_RS07200	0.34	+0.5
1,546,590	-		LRK54_RS07200	0.34	-0.0
1,546,595	+		LRK54_RS07200	0.35	+2.3
1,546,595	+		LRK54_RS07200	0.35	+0.7
1,546,595	+		LRK54_RS07200	0.35	+0.3
1,546,595	+		LRK54_RS07200	0.35	-1.0
1,546,595	+		LRK54_RS07200	0.35	+0.8
1,546,595	+		LRK54_RS07200	0.35	-0.1
1,546,596	-		LRK54_RS07200	0.36	+0.7
1,546,596	-		LRK54_RS07200	0.36	-0.1
1,546,596	-		LRK54_RS07200	0.36	-0.0
1,546,596	-		LRK54_RS07200	0.36	+0.1
1,546,596	-		LRK54_RS07200	0.36	+0.5
1,546,596	-		LRK54_RS07200	0.36	+0.7
1,546,971	+				+2.9
1,546,971	+				+0.3
1,546,981	+				+1.0
1,546,981	+				+0.5
1,546,981	+				-0.3
1,546,981	+				-0.0
1,546,981	+				+1.4
1,546,981	+				+1.9
1,546,981	+				+0.2
1,546,981	+				+0.8
1,546,981	+				+1.3
1,546,981	+				+0.5
1,546,981	+				-2.3
1,546,981	+				+1.3
1,546,981	+				+0.2
1,546,981	+				+1.0
1,546,981	+				+1.0
1,546,981	+				+0.3
1,546,981	+				-0.5
1,546,981	+				+0.2
1,546,982	-				-0.7
1,546,982	-				-0.4
1,546,982	-				-0.2
1,546,982	-				-0.4
1,546,982	-				-1.1
1,546,982	-				-0.6
1,546,982	-				+0.3
1,546,982	-				-0.4
1,546,982	-				+0.3
1,546,982	-				-0.7
1,546,982	-				-1.6
1,546,982	-				+1.3
1,546,982	-				+0.1
1,547,018	+				+1.7
1,547,018	+				-1.0
1,547,018	+				-0.2
1,547,018	+				-2.3
1,547,018	+				-0.1
1,547,018	+				+1.2
1,547,018	+				+0.3
1,547,018	+				-0.2
1,547,018	+				-0.3
1,547,018	+				+0.6
1,547,018	+				+0.2
1,547,018	+				+0.7
1,547,018	+				-0.9
1,547,018	+				+0.3
1,547,018	+				-0.4
1,547,018	+				-0.5
1,547,018	+				-0.3
1,547,018	+				+0.2
1,547,018	+				+0.0
1,547,018	+				-0.4
1,547,018	+				+0.3
1,547,018	+				+0.4
1,547,018	+				+1.3
1,547,018	+				+0.9
1,547,018	+				-0.1
1,547,018	+				-0.4
1,547,018	+				+1.3
1,547,019	-				-0.7
1,547,019	-				+0.7
1,547,019	-				+1.1
1,547,019	-				-0.0
1,547,019	-				+0.5
1,547,019	-				-1.1
1,547,019	-				-1.6
1,547,019	-				+0.8
1,547,019	-				+1.1
1,547,019	-				+1.0
1,547,019	-				+0.4
1,547,019	-				+0.7
1,547,019	-				-0.7
1,547,019	-				+3.1
1,547,019	-				+0.2
1,547,019	-				+0.2
1,547,019	-				-0.9
1,547,019	-				+1.8
1,547,019	-				-1.2
1,547,019	-				-0.8
1,547,019	-				-0.8
1,547,019	-				-0.1
1,547,019	-				+0.3
1,547,020	-				-0.2
1,547,040	+				+1.0
1,547,040	+				+3.3
1,547,040	+				+1.0
1,547,040	+				+0.6
1,547,040	+				+0.1
1,547,040	+				+0.6
1,547,040	+				-0.5
1,547,041	-				-0.7
1,547,041	-				+0.7
1,547,041	-				-0.1
1,547,041	-				+0.2
1,547,041	-				+0.4
1,547,041	-				-1.3
1,547,064	+				+0.9
1,547,064	+				+0.8
1,547,064	+				-0.0
1,547,064	+				+0.6
1,547,064	+				+1.7
1,547,064	+				-1.4
1,547,064	+				+0.1
1,547,064	+				-0.3
1,547,064	+				-0.6
1,547,064	+				+0.5
1,547,064	+				+1.8
1,547,064	+				+0.3
1,547,064	+				+2.3
1,547,064	+				-0.4
1,547,064	+				+0.4
1,547,064	+				-1.9
1,547,064	+				+1.3
1,547,064	+				-0.2
1,547,064	+				+0.5
1,547,064	+				+2.3
1,547,064	+				+0.1
1,547,064	+				-0.3
1,547,064	+				+1.0
1,547,064	+				-0.6
1,547,064	+				-0.0
1,547,064	+				-0.4
1,547,064	+				-0.9
1,547,064	+				-0.0
1,547,064	+				+0.8
1,547,064	+				-0.2
1,547,064	+				-0.3
1,547,064	+				-0.4
1,547,065	-				+0.1
1,547,065	-				-0.1
1,547,065	-				+1.3
1,547,065	-				-1.1
1,547,065	-				-0.9
1,547,065	-				+0.3
1,547,065	-				-0.3
1,547,065	-				+2.3
1,547,065	-				-1.7
1,547,065	-				-0.0
1,547,065	-				+0.3
1,547,065	-				-0.5
1,547,065	-				-1.0
1,547,065	-				+0.3
1,547,065	-				+0.0
1,547,065	-				-0.5
1,547,065	-				+0.4
1,547,065	-				+1.7
1,547,065	-				+0.7
1,547,065	-				+2.3
1,547,065	-				-0.0
1,547,065	-				-0.0
1,547,065	-				-1.1
1,547,065	-				-0.7
1,547,065	-				+1.3
1,547,065	-				-0.7
1,547,065	-				+0.3
1,547,065	-				+1.7
1,547,065	-				+1.1
1,547,065	-				+1.1
1,547,065	-				-0.9
1,547,065	-				+0.6
1,547,065	-				+0.8
1,547,065	-				-1.0
1,547,065	-				-0.3
1,547,065	-				-2.0
1,547,065	-				-0.7
1,547,065	-				+0.4
1,547,078	+				-1.0
1,547,078	+				-0.0
1,547,078	+				+1.3
1,547,078	+				+0.7
1,547,078	+				-0.1
1,547,078	+				+1.1
1,547,078	+				-1.8
1,547,078	+				+0.3
1,547,078	+				+0.2
1,547,078	+				+0.9
1,547,078	+				+0.4
1,547,078	+				+0.2
1,547,078	+				+0.3
1,547,079	-				-0.2
1,547,079	-				-0.1
1,547,079	-				+0.4
1,547,079	-				+0.4
1,547,079	-				-1.4
1,547,079	-				-0.7
1,547,079	-				+0.6
1,547,079	-				+0.9
1,547,079	-				+1.1
1,547,079	-				-0.0
1,547,079	-				+0.4
1,547,079	-				+1.7
1,547,079	-				+1.9
1,547,079	-				+1.0
1,547,079	-				+0.7
1,547,079	-				+0.6
1,547,079	-				+0.2
1,547,079	-				+0.2
1,547,079	-				+0.8
1,547,118	+		LRK54_RS07205	0.11	-0.2
1,547,118	+		LRK54_RS07205	0.11	-0.0
1,547,118	+		LRK54_RS07205	0.11	-1.4
1,547,118	+		LRK54_RS07205	0.11	-0.1
1,547,118	+		LRK54_RS07205	0.11	+0.7
1,547,118	+		LRK54_RS07205	0.11	+0.2
1,547,118	+		LRK54_RS07205	0.11	+0.4
1,547,118	+		LRK54_RS07205	0.11	+0.1
1,547,118	+		LRK54_RS07205	0.11	-0.3
1,547,119	-		LRK54_RS07205	0.11	+0.1
1,547,119	-		LRK54_RS07205	0.11	-0.0
1,547,192	+		LRK54_RS07205	0.24	-0.2
1,547,193	-		LRK54_RS07205	0.24	-1.4
1,547,281	-		LRK54_RS07205	0.40	+0.4
1,547,281	-		LRK54_RS07205	0.40	-0.0
1,547,281	-		LRK54_RS07205	0.40	+0.1
1,547,460	+		LRK54_RS07205	0.71	+1.2
1,547,460	+		LRK54_RS07205	0.71	+0.1
1,547,460	+		LRK54_RS07205	0.71	+0.2
1,547,460	+		LRK54_RS07205	0.71	+0.1
1,547,460	+		LRK54_RS07205	0.71	+1.8
1,547,460	+		LRK54_RS07205	0.71	+0.9
1,547,460	+		LRK54_RS07205	0.71	+1.6
1,547,460	+		LRK54_RS07205	0.71	-0.4
1,547,460	+		LRK54_RS07205	0.71	+0.0
1,547,460	+		LRK54_RS07205	0.71	+0.3
1,547,460	+		LRK54_RS07205	0.71	-3.1
1,547,460	+		LRK54_RS07205	0.71	+0.7
1,547,461	-		LRK54_RS07205	0.72	-0.0
1,547,461	-		LRK54_RS07205	0.72	+0.4
1,547,461	-		LRK54_RS07205	0.72	-0.4
1,547,461	-		LRK54_RS07205	0.72	+0.9
1,547,461	-		LRK54_RS07205	0.72	-0.9
1,547,461	-		LRK54_RS07205	0.72	-0.6
1,547,461	-		LRK54_RS07205	0.72	+0.3
1,547,461	-		LRK54_RS07205	0.72	-0.3
1,547,461	-		LRK54_RS07205	0.72	-0.7
1,547,461	-		LRK54_RS07205	0.72	+0.3
1,547,461	-		LRK54_RS07205	0.72	+0.7
1,547,461	-		LRK54_RS07205	0.72	+0.2
1,547,461	-		LRK54_RS07205	0.72	-0.2
1,547,461	-		LRK54_RS07205	0.72	-0.5
1,547,461	-				+1.3
1,547,461	-		LRK54_RS07205	0.72	+1.3
1,547,539	-		LRK54_RS07205	0.86	+1.3
1,547,554	+		LRK54_RS07205	0.88	-0.5
1,547,554	+		LRK54_RS07205	0.88	-0.6
1,547,555	-		LRK54_RS07205	0.88	+0.7
1,547,555	-		LRK54_RS07205	0.88	+0.5
1,547,575	+				+0.3
1,547,575	+				+0.8
1,547,575	+				+1.3
1,547,575	+				+1.7
1,547,575	+				-0.7
1,547,575	+				-0.2
1,547,575	+				-0.9
1,547,575	+				+0.1
1,547,575	+				-0.1
1,547,576	-				-0.0
1,547,576	-				+0.3
1,547,576	-				+0.4
1,547,576	-				-0.4
1,547,576	-				+0.4
1,547,576	-				+0.7
1,547,576	-				-2.3
1,547,576	-				+0.7
1,547,576	-				+0.3
1,547,595	+				-0.2
1,547,595	+				-0.6
1,547,595	+				-0.5
1,547,595	+				+1.3
1,547,595	+				+0.0
1,547,595	+				-0.2
1,547,595	+				+0.8
1,547,595	+				+1.8
1,547,595	+				+0.2
1,547,596	-				+0.4
1,547,596	-				+0.1
1,547,596	-				-0.2
1,547,596	-				-0.3
1,547,596	-				+2.9
1,547,596	-				+1.5
1,547,596	-				+0.8
1,547,596	-				+0.0
1,547,596	-				-0.4
1,547,596	-				-0.6
1,547,617	+				+2.3
1,547,617	+				+0.3
1,547,617	+				+0.4
1,547,618	-				-0.3
1,547,637	+				-0.6