Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07125

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
1,523,762	+		LRK54_RS07120	0.47	-2.7
1,523,762	+		LRK54_RS07120	0.47	-1.0
1,523,762	+		LRK54_RS07120	0.47	-0.9
1,523,762	+		LRK54_RS07120	0.47	-0.6
1,523,762	+		LRK54_RS07120	0.47	+1.6
1,523,762	+		LRK54_RS07120	0.47	-2.4
1,523,762	+		LRK54_RS07120	0.47	-1.7
1,523,762	+		LRK54_RS07120	0.47	+0.7
1,523,762	+		LRK54_RS07120	0.47	-1.0
1,523,763	-		LRK54_RS07120	0.47	-0.6
1,523,763	-		LRK54_RS07120	0.47	+1.3
1,523,763	-		LRK54_RS07120	0.47	+0.3
1,523,763	-		LRK54_RS07120	0.47	-0.1
1,523,763	-		LRK54_RS07120	0.47	-0.9
1,523,763	-		LRK54_RS07120	0.47	-0.7
1,523,775	+		LRK54_RS07120	0.48	-0.9
1,523,775	+		LRK54_RS07120	0.48	+0.7
1,523,775	+		LRK54_RS07120	0.48	-1.6
1,523,775	+		LRK54_RS07120	0.48	+0.1
1,523,776	-		LRK54_RS07120	0.48	-0.7
1,523,776	-		LRK54_RS07120	0.48	-1.3
1,523,776	-		LRK54_RS07120	0.48	-2.1
1,523,850	+		LRK54_RS07120	0.52	-0.2
1,523,850	+		LRK54_RS07120	0.52	-0.5
1,523,850	+		LRK54_RS07120	0.52	+0.1
1,523,850	+		LRK54_RS07120	0.52	-0.7
1,523,850	+		LRK54_RS07120	0.52	-0.9
1,523,850	+		LRK54_RS07120	0.52	+1.6
1,523,850	+		LRK54_RS07120	0.52	-0.5
1,523,850	+		LRK54_RS07120	0.52	-1.3
1,523,850	+		LRK54_RS07120	0.52	+0.1
1,523,850	+		LRK54_RS07120	0.52	+0.5
1,523,850	+		LRK54_RS07120	0.52	-1.4
1,523,850	+		LRK54_RS07120	0.52	-1.2
1,523,850	+		LRK54_RS07120	0.52	-1.1
1,523,850	+		LRK54_RS07120	0.52	-1.9
1,523,850	+		LRK54_RS07120	0.52	-0.3
1,523,850	+		LRK54_RS07120	0.52	-0.9
1,523,850	+		LRK54_RS07120	0.52	-1.8
1,523,850	+		LRK54_RS07120	0.52	-0.5
1,523,850	+		LRK54_RS07120	0.52	-0.3
1,523,850	+		LRK54_RS07120	0.52	+0.7
1,523,850	+		LRK54_RS07120	0.52	-0.4
1,523,850	+		LRK54_RS07120	0.52	-2.0
1,523,850	+		LRK54_RS07120	0.52	-0.4
1,523,850	+		LRK54_RS07120	0.52	+0.7
1,523,850	+		LRK54_RS07120	0.52	-0.8
1,523,850	+		LRK54_RS07120	0.52	-1.4
1,523,851	-		LRK54_RS07120	0.52	-1.3
1,523,851	-		LRK54_RS07120	0.52	-0.6
1,523,851	-		LRK54_RS07120	0.52	-0.8
1,523,851	-		LRK54_RS07120	0.52	+0.1
1,523,851	-		LRK54_RS07120	0.52	-0.2
1,523,851	-		LRK54_RS07120	0.52	-1.9
1,523,851	-		LRK54_RS07120	0.52	-1.8
1,523,851	-		LRK54_RS07120	0.52	-0.9
1,523,851	-		LRK54_RS07120	0.52	+1.3
1,523,851	-		LRK54_RS07120	0.52	-0.4
1,523,851	-		LRK54_RS07120	0.52	-0.9
1,523,851	-		LRK54_RS07120	0.52	-2.1
1,523,851	-		LRK54_RS07120	0.52	-0.6
1,523,851	-		LRK54_RS07120	0.52	-2.4
1,523,851	-		LRK54_RS07120	0.52	-0.8
1,523,851	-		LRK54_RS07120	0.52	+0.4
1,523,851	-		LRK54_RS07120	0.52	-0.9
1,523,851	-		LRK54_RS07120	0.52	-0.9
1,523,851	-		LRK54_RS07120	0.52	-1.9
1,523,851	-		LRK54_RS07120	0.52	-0.8
1,523,851	-		LRK54_RS07120	0.52	+0.5
1,523,851	-		LRK54_RS07120	0.52	-0.6
1,523,851	-		LRK54_RS07120	0.52	-1.3
1,523,851	-		LRK54_RS07120	0.52	-0.9
1,523,851	-		LRK54_RS07120	0.52	-1.3
1,523,851	-		LRK54_RS07120	0.52	-0.5
1,523,851	-		LRK54_RS07120	0.52	-0.5
1,523,889	+		LRK54_RS07120	0.55	-0.9
1,523,889	+		LRK54_RS07120	0.55	+1.7
1,523,889	+		LRK54_RS07120	0.55	-2.0
1,523,889	+		LRK54_RS07120	0.55	-0.1
1,523,889	+		LRK54_RS07120	0.55	-1.7
1,523,889	+		LRK54_RS07120	0.55	-0.1
1,523,890	-		LRK54_RS07120	0.55	+0.8
1,523,890	-		LRK54_RS07120	0.55	-0.4
1,523,890	-		LRK54_RS07120	0.55	-1.5
1,523,890	-		LRK54_RS07120	0.55	-1.0
1,523,890	-		LRK54_RS07120	0.55	-1.0
1,523,890	-		LRK54_RS07120	0.55	+0.9
1,523,890	-		LRK54_RS07120	0.55	+0.2
1,523,940	+		LRK54_RS07120	0.58	-2.9
1,523,940	+		LRK54_RS07120	0.58	+0.6
1,523,940	+		LRK54_RS07120	0.58	-1.2
1,523,940	+		LRK54_RS07120	0.58	-1.5
1,523,940	+		LRK54_RS07120	0.58	-0.7
1,523,940	+		LRK54_RS07120	0.58	-3.3
1,523,940	+		LRK54_RS07120	0.58	-1.7
1,523,940	+		LRK54_RS07120	0.58	-0.6
1,523,941	-		LRK54_RS07120	0.58	-1.6
1,523,941	-		LRK54_RS07120	0.58	-0.2
1,523,941	-		LRK54_RS07120	0.58	-0.2
1,523,941	-		LRK54_RS07120	0.58	+0.7
1,523,941	-		LRK54_RS07120	0.58	+1.2
1,523,941	-		LRK54_RS07120	0.58	-0.8
1,523,941	-		LRK54_RS07120	0.58	+1.0
1,523,941	-		LRK54_RS07120	0.58	-0.2
1,523,941	-		LRK54_RS07120	0.58	+0.4
1,523,941	-		LRK54_RS07120	0.58	-1.0
1,523,941	-		LRK54_RS07120	0.58	-0.7
1,523,941	-		LRK54_RS07120	0.58	-0.3
1,523,941	-		LRK54_RS07120	0.58	+0.7
1,523,941	-		LRK54_RS07120	0.58	-0.6
1,524,147	+		LRK54_RS07120	0.71	-0.4
1,524,147	+		LRK54_RS07120	0.71	+0.7
1,524,147	+		LRK54_RS07120	0.71	+0.3
1,524,147	+		LRK54_RS07120	0.71	-0.9
1,524,147	+		LRK54_RS07120	0.71	-1.2
1,524,147	+		LRK54_RS07120	0.71	-1.4
1,524,148	-		LRK54_RS07120	0.71	-0.6
1,524,148	-		LRK54_RS07120	0.71	+1.4
1,524,148	-		LRK54_RS07120	0.71	-0.7
1,524,148	-		LRK54_RS07120	0.71	-2.6
1,524,183	+		LRK54_RS07120	0.73	-0.3
1,524,183	+		LRK54_RS07120	0.73	-0.5
1,524,183	+		LRK54_RS07120	0.73	-2.2
1,524,183	+		LRK54_RS07120	0.73	+1.3
1,524,183	+		LRK54_RS07120	0.73	-1.0
1,524,183	+		LRK54_RS07120	0.73	-0.0
1,524,183	+		LRK54_RS07120	0.73	-1.4
1,524,183	+		LRK54_RS07120	0.73	-1.9
1,524,183	+		LRK54_RS07120	0.73	-1.0
1,524,183	+		LRK54_RS07120	0.73	+0.5
1,524,184	-		LRK54_RS07120	0.73	+0.3
1,524,184	-		LRK54_RS07120	0.73	-0.9
1,524,184	-		LRK54_RS07120	0.73	-0.9
1,524,184	-		LRK54_RS07120	0.73	+0.3
1,524,414	+		LRK54_RS07120	0.87	-0.9
1,524,414	+		LRK54_RS07120	0.87	+0.3
1,524,414	+		LRK54_RS07120	0.87	-0.9
1,524,414	+		LRK54_RS07120	0.87	-2.1
1,524,414	+		LRK54_RS07120	0.87	-0.4
1,524,414	+		LRK54_RS07120	0.87	-1.0
1,524,414	+		LRK54_RS07120	0.87	-0.9
1,524,414	+		LRK54_RS07120	0.87	-1.2
1,524,414	+		LRK54_RS07120	0.87	-0.7
1,524,414	+		LRK54_RS07120	0.87	-0.8
1,524,415	-		LRK54_RS07120	0.87	-0.8
1,524,415	-		LRK54_RS07120	0.87	+0.2
1,524,415	-		LRK54_RS07120	0.87	-0.7
1,524,415	-		LRK54_RS07120	0.87	-0.7
1,524,415	-		LRK54_RS07120	0.87	-0.6
1,524,415	-		LRK54_RS07120	0.87	-0.5
1,524,415	-		LRK54_RS07120	0.87	-0.2
1,524,415	-		LRK54_RS07120	0.87	-0.7
1,524,415	-		LRK54_RS07120	0.87	-1.1
1,524,415	-		LRK54_RS07120	0.87	-0.4
1,524,415	-		LRK54_RS07120	0.87	-0.2
1,524,415	-		LRK54_RS07120	0.87	-2.0
1,524,415	-		LRK54_RS07120	0.87	-1.7
1,524,513	+				-0.5
1,524,513	+				-2.0
1,524,513	+				+1.7
1,524,513	+				-0.7
1,524,513	+				+0.0
1,524,513	+				-2.4
1,524,513	+				+0.6
1,524,513	+				+0.2
1,524,513	+				-1.6
1,524,513	+				-0.4
1,524,513	+				-0.4
1,524,514	-				+1.6
1,524,514	-				-0.4
1,524,514	-				-0.3
1,524,514	-				+2.0
1,524,514	-				-0.5
1,524,514	-				-0.9
1,524,514	-				+0.4
1,524,514	-				-1.1
1,524,514	-				-0.2
1,524,514	-				-2.0
1,524,514	-				+0.5
1,524,514	-				+0.9
1,524,514	-				-0.8
1,524,615	+				-0.5
1,524,615	+				-0.0
1,524,615	+				+0.1
1,524,615	+				+0.3
1,524,615	+				+0.3
1,524,616	-				-0.5
1,524,616	-				-0.3
1,524,616	-				-2.1
1,524,616	-				-0.5
1,524,616	-				+1.0
1,524,616	-				-0.6
1,524,616	-				-0.0
1,524,616	-				-1.9
1,524,636	+				-0.6
1,524,637	-				-0.3
1,524,637	-				+0.6
1,524,876	+		LRK54_RS07125	0.20	+0.1
1,524,876	+		LRK54_RS07125	0.20	-0.6
1,524,876	+		LRK54_RS07125	0.20	-1.4
1,524,876	+		LRK54_RS07125	0.20	+0.5
1,524,876	+		LRK54_RS07125	0.20	-0.3
1,524,876	+		LRK54_RS07125	0.20	-0.9
1,524,876	+		LRK54_RS07125	0.20	-0.9
1,524,876	+		LRK54_RS07125	0.20	+0.4
1,524,877	-		LRK54_RS07125	0.20	-0.6
1,524,877	-		LRK54_RS07125	0.20	-0.1
1,524,877	-		LRK54_RS07125	0.20	-0.3
1,524,877	-		LRK54_RS07125	0.20	-0.6
1,524,877	-		LRK54_RS07125	0.20	+1.0
1,524,877	-		LRK54_RS07125	0.20	+1.7
1,524,877	-		LRK54_RS07125	0.20	+0.1
1,524,877	-		LRK54_RS07125	0.20	-0.3
1,524,877	-		LRK54_RS07125	0.20	-1.1
1,524,877	-		LRK54_RS07125	0.20	-0.4
1,525,050	+		LRK54_RS07125	0.39	-0.8
1,525,050	+		LRK54_RS07125	0.39	-0.9
1,525,050	+		LRK54_RS07125	0.39	-0.8
1,525,050	+		LRK54_RS07125	0.39	-0.3
1,525,050	+		LRK54_RS07125	0.39	+0.1
1,525,050	+		LRK54_RS07125	0.39	-1.6
1,525,050	+		LRK54_RS07125	0.39	-0.2
1,525,050	+		LRK54_RS07125	0.39	+1.0
1,525,050	+		LRK54_RS07125	0.39	-0.2
1,525,050	+		LRK54_RS07125	0.39	-0.4
1,525,050	+		LRK54_RS07125	0.39	-0.2
1,525,050	+		LRK54_RS07125	0.39	+0.2
1,525,050	+		LRK54_RS07125	0.39	-0.2
1,525,050	+		LRK54_RS07125	0.39	+0.3
1,525,050	+		LRK54_RS07125	0.39	-0.0
1,525,050	+		LRK54_RS07125	0.39	-0.5
1,525,050	+		LRK54_RS07125	0.39	-0.7
1,525,050	+		LRK54_RS07125	0.39	-0.5
1,525,050	+		LRK54_RS07125	0.39	-0.3
1,525,050	+		LRK54_RS07125	0.39	+0.7
1,525,050	+		LRK54_RS07125	0.39	-0.5
1,525,050	+		LRK54_RS07125	0.39	+0.4
1,525,050	+		LRK54_RS07125	0.39	+0.1
1,525,050	+		LRK54_RS07125	0.39	+0.1
1,525,050	+		LRK54_RS07125	0.39	-0.2
1,525,050	+		LRK54_RS07125	0.39	+0.1
1,525,051	-		LRK54_RS07125	0.39	+0.1
1,525,051	-		LRK54_RS07125	0.39	-0.9
1,525,051	-		LRK54_RS07125	0.39	-0.5
1,525,051	-		LRK54_RS07125	0.39	-0.8
1,525,051	-		LRK54_RS07125	0.39	+1.3
1,525,051	-		LRK54_RS07125	0.39	+0.5
1,525,051	-		LRK54_RS07125	0.39	+0.1
1,525,051	-		LRK54_RS07125	0.39	-0.8
1,525,051	-		LRK54_RS07125	0.39	+1.4
1,525,051	-		LRK54_RS07125	0.39	+2.3
1,525,051	-		LRK54_RS07125	0.39	-0.7
1,525,051	-		LRK54_RS07125	0.39	-0.0
1,525,051	-		LRK54_RS07125	0.39	-0.4
1,525,051	-		LRK54_RS07125	0.39	-0.5
1,525,051	-		LRK54_RS07125	0.39	+0.4
1,525,051	-		LRK54_RS07125	0.39	+1.3
1,525,051	-		LRK54_RS07125	0.39	-0.4
1,525,051	-		LRK54_RS07125	0.39	-0.3
1,525,051	-		LRK54_RS07125	0.39	-0.3
1,525,051	-		LRK54_RS07125	0.39	+0.3
1,525,051	-		LRK54_RS07125	0.39	+0.3
1,525,080	+		LRK54_RS07125	0.42	-0.4
1,525,081	-		LRK54_RS07125	0.42	-0.3
1,525,126	+		LRK54_RS07125	0.47	-0.9
1,525,173	+		LRK54_RS07125	0.52	-0.8
1,525,173	+		LRK54_RS07125	0.52	-0.1
1,525,173	+		LRK54_RS07125	0.52	+0.1
1,525,173	+		LRK54_RS07125	0.52	+0.3
1,525,174	-		LRK54_RS07125	0.53	+0.6
1,525,174	-		LRK54_RS07125	0.53	-0.3
1,525,174	-		LRK54_RS07125	0.53	-0.4
1,525,174	-		LRK54_RS07125	0.53	+1.2
1,525,182	+		LRK54_RS07125	0.53	-0.2
1,525,182	+		LRK54_RS07125	0.53	-0.7
1,525,182	+		LRK54_RS07125	0.53	-0.9
1,525,182	+		LRK54_RS07125	0.53	+1.1
1,525,182	+		LRK54_RS07125	0.53	-1.9
1,525,182	+		LRK54_RS07125	0.53	-0.6
1,525,182	+		LRK54_RS07125	0.53	+0.2
1,525,182	+		LRK54_RS07125	0.53	-0.4
1,525,182	+		LRK54_RS07125	0.53	-0.0
1,525,182	+		LRK54_RS07125	0.53	-0.5
1,525,182	+		LRK54_RS07125	0.53	+0.1
1,525,182	+		LRK54_RS07125	0.53	+0.3
1,525,182	+		LRK54_RS07125	0.53	-1.3
1,525,182	+		LRK54_RS07125	0.53	+0.2
1,525,182	+		LRK54_RS07125	0.53	+0.3
1,525,182	+		LRK54_RS07125	0.53	-0.2
1,525,183	-		LRK54_RS07125	0.54	+0.4
1,525,183	-		LRK54_RS07125	0.54	+0.2
1,525,183	-		LRK54_RS07125	0.54	+1.6
1,525,183	-		LRK54_RS07125	0.54	-0.1
1,525,183	-		LRK54_RS07125	0.54	+0.4
1,525,183	-		LRK54_RS07125	0.54	+1.1
1,525,183	-		LRK54_RS07125	0.54	+1.1
1,525,183	-		LRK54_RS07125	0.54	-0.1
1,525,183	-		LRK54_RS07125	0.54	+1.1
1,525,183	-		LRK54_RS07125	0.54	+1.3
1,525,183	-		LRK54_RS07125	0.54	+0.6
1,525,188	+		LRK54_RS07125	0.54	+1.5
1,525,188	+		LRK54_RS07125	0.54	-0.4
1,525,189	-		LRK54_RS07125	0.54	+1.3
1,525,189	-		LRK54_RS07125	0.54	+0.1
1,525,189	-		LRK54_RS07125	0.54	+1.3
1,525,206	+		LRK54_RS07125	0.56	+0.0
1,525,207	-		LRK54_RS07125	0.56	+0.3
1,525,278	+		LRK54_RS07125	0.64	-0.0
1,525,278	+		LRK54_RS07125	0.64	-0.4
1,525,278	+		LRK54_RS07125	0.64	-0.4
1,525,278	+		LRK54_RS07125	0.64	-0.3
1,525,278	+		LRK54_RS07125	0.64	+0.4
1,525,278	+		LRK54_RS07125	0.64	+1.2
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