Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07120

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
1,522,009	+		LRK54_RS07110	0.23	-0.7
1,522,009	+		LRK54_RS07110	0.23	-0.7
1,522,009	+		LRK54_RS07110	0.23	-0.3
1,522,045	+		LRK54_RS07110	0.27	-0.1
1,522,045	+		LRK54_RS07110	0.27	+0.2
1,522,045	+		LRK54_RS07110	0.27	-1.3
1,522,045	+		LRK54_RS07110	0.27	+0.5
1,522,045	+		LRK54_RS07110	0.27	-0.9
1,522,045	+		LRK54_RS07110	0.27	-0.5
1,522,045	+		LRK54_RS07110	0.27	-1.1
1,522,045	+		LRK54_RS07110	0.27	-0.2
1,522,045	+		LRK54_RS07110	0.27	+0.3
1,522,045	+		LRK54_RS07110	0.27	-0.0
1,522,045	+		LRK54_RS07110	0.27	-0.3
1,522,045	+		LRK54_RS07110	0.27	-2.1
1,522,045	+		LRK54_RS07110	0.27	-1.0
1,522,045	+		LRK54_RS07110	0.27	+1.3
1,522,046	-		LRK54_RS07110	0.27	-0.4
1,522,046	-		LRK54_RS07110	0.27	-0.9
1,522,046	-		LRK54_RS07110	0.27	+0.1
1,522,046	-		LRK54_RS07110	0.27	-0.7
1,522,046	-		LRK54_RS07110	0.27	-0.5
1,522,046	-		LRK54_RS07110	0.27	-0.0
1,522,046	-		LRK54_RS07110	0.27	-1.1
1,522,046	-		LRK54_RS07110	0.27	-0.6
1,522,046	-		LRK54_RS07110	0.27	-1.5
1,522,046	-		LRK54_RS07110	0.27	+0.9
1,522,046	-		LRK54_RS07110	0.27	+0.2
1,522,046	-		LRK54_RS07110	0.27	+0.2
1,522,046	-		LRK54_RS07110	0.27	-1.1
1,522,046	-		LRK54_RS07110	0.27	-1.0
1,522,046	-		LRK54_RS07110	0.27	-0.9
1,522,046	-		LRK54_RS07110	0.27	+0.3
1,522,046	-		LRK54_RS07110	0.27	+0.7
1,522,046	-		LRK54_RS07110	0.27	-0.7
1,522,046	-		LRK54_RS07110	0.27	-0.4
1,522,057	+		LRK54_RS07110	0.28	-0.5
1,522,057	+		LRK54_RS07110	0.28	-0.7
1,522,057	+		LRK54_RS07110	0.28	-1.7
1,522,057	+		LRK54_RS07110	0.28	+0.5
1,522,057	+		LRK54_RS07110	0.28	-0.5
1,522,057	+		LRK54_RS07110	0.28	-1.4
1,522,057	+		LRK54_RS07110	0.28	+1.3
1,522,057	+		LRK54_RS07110	0.28	+0.1
1,522,057	+		LRK54_RS07110	0.28	+1.0
1,522,057	+		LRK54_RS07110	0.28	-2.1
1,522,057	+		LRK54_RS07110	0.28	+0.3
1,522,057	+		LRK54_RS07110	0.28	+0.1
1,522,057	+		LRK54_RS07110	0.28	-0.9
1,522,057	+		LRK54_RS07110	0.28	-1.2
1,522,057	+		LRK54_RS07110	0.28	+0.6
1,522,058	-		LRK54_RS07110	0.28	-1.0
1,522,058	-		LRK54_RS07110	0.28	-1.5
1,522,058	-		LRK54_RS07110	0.28	-0.4
1,522,058	-		LRK54_RS07110	0.28	+1.0
1,522,058	-		LRK54_RS07110	0.28	-1.9
1,522,058	-		LRK54_RS07110	0.28	-0.3
1,522,058	-		LRK54_RS07110	0.28	+1.5
1,522,058	-		LRK54_RS07110	0.28	-1.7
1,522,058	-		LRK54_RS07110	0.28	-1.0
1,522,058	-		LRK54_RS07110	0.28	+0.5
1,522,058	-		LRK54_RS07110	0.28	-1.9
1,522,058	-		LRK54_RS07110	0.28	-1.6
1,522,058	-		LRK54_RS07110	0.28	+1.3
1,522,058	-		LRK54_RS07110	0.28	-1.0
1,522,058	-		LRK54_RS07110	0.28	-1.4
1,522,058	-		LRK54_RS07110	0.28	+0.3
1,522,058	-		LRK54_RS07110	0.28	-0.2
1,522,058	-		LRK54_RS07110	0.28	-0.9
1,522,058	-		LRK54_RS07110	0.28	-0.3
1,522,058	-		LRK54_RS07110	0.28	-0.0
1,522,058	-		LRK54_RS07110	0.28	-0.4
1,522,058	-		LRK54_RS07110	0.28	-1.3
1,522,058	-		LRK54_RS07110	0.28	-1.2
1,522,058	-		LRK54_RS07110	0.28	-2.0
1,522,075	+		LRK54_RS07110	0.30	-0.6
1,522,075	+		LRK54_RS07110	0.30	-2.0
1,522,075	+		LRK54_RS07110	0.30	-2.6
1,522,075	+		LRK54_RS07110	0.30	-0.2
1,522,075	+		LRK54_RS07110	0.30	-1.3
1,522,075	+		LRK54_RS07110	0.30	-1.2
1,522,075	+		LRK54_RS07110	0.30	+0.4
1,522,076	-		LRK54_RS07110	0.30	-0.2
1,522,076	-		LRK54_RS07110	0.30	-2.6
1,522,076	-		LRK54_RS07110	0.30	+0.1
1,522,076	-		LRK54_RS07110	0.30	-0.6
1,522,076	-		LRK54_RS07110	0.30	-1.3
1,522,076	-		LRK54_RS07110	0.30	-0.6
1,522,076	-		LRK54_RS07110	0.30	+0.3
1,522,076	-		LRK54_RS07110	0.30	+0.0
1,522,076	-		LRK54_RS07110	0.30	-1.6
1,522,076	-		LRK54_RS07110	0.30	-1.1
1,522,076	-		LRK54_RS07110	0.30	-0.9
1,522,076	-		LRK54_RS07110	0.30	-0.9
1,522,294	+		LRK54_RS07110	0.55	+0.5
1,522,294	+		LRK54_RS07110	0.55	+0.7
1,522,294	+		LRK54_RS07110	0.55	-1.1
1,522,294	+		LRK54_RS07110	0.55	-0.5
1,522,294	+		LRK54_RS07110	0.55	+0.0
1,522,294	+		LRK54_RS07110	0.55	-0.3
1,522,295	-		LRK54_RS07110	0.55	-0.4
1,522,295	-		LRK54_RS07110	0.55	-1.0
1,522,295	-		LRK54_RS07110	0.55	+1.0
1,522,295	-		LRK54_RS07110	0.55	+0.0
1,522,295	-		LRK54_RS07110	0.55	-1.3
1,522,295	-		LRK54_RS07110	0.55	+0.5
1,522,295	-		LRK54_RS07110	0.55	-2.0
1,522,295	-		LRK54_RS07110	0.55	+0.4
1,522,372	+		LRK54_RS07110	0.64	-1.3
1,522,372	+		LRK54_RS07110	0.64	-0.3
1,522,372	+		LRK54_RS07110	0.64	+0.1
1,522,372	+		LRK54_RS07110	0.64	-0.6
1,522,372	+		LRK54_RS07110	0.64	-0.7
1,522,372	+		LRK54_RS07110	0.64	-0.4
1,522,372	+		LRK54_RS07110	0.64	-1.5
1,522,372	+		LRK54_RS07110	0.64	+0.4
1,522,372	+		LRK54_RS07110	0.64	-0.0
1,522,372	+		LRK54_RS07110	0.64	-0.0
1,522,372	+		LRK54_RS07110	0.64	-0.7
1,522,373	-		LRK54_RS07110	0.64	-0.5
1,522,373	-		LRK54_RS07110	0.64	+0.3
1,522,373	-		LRK54_RS07110	0.64	+1.7
1,522,373	-		LRK54_RS07110	0.64	-0.2
1,522,373	-		LRK54_RS07110	0.64	+1.1
1,522,468	+		LRK54_RS07110	0.74	-0.7
1,522,468	+		LRK54_RS07110	0.74	+0.1
1,522,468	+		LRK54_RS07110	0.74	-0.4
1,522,468	+		LRK54_RS07110	0.74	-2.0
1,522,468	+		LRK54_RS07110	0.74	+0.6
1,522,468	+		LRK54_RS07110	0.74	-0.1
1,522,468	+		LRK54_RS07110	0.74	-0.9
1,522,468	+		LRK54_RS07110	0.74	+0.7
1,522,468	+		LRK54_RS07110	0.74	+0.1
1,522,468	+		LRK54_RS07110	0.74	-0.4
1,522,468	+		LRK54_RS07110	0.74	-0.9
1,522,468	+		LRK54_RS07110	0.74	+0.6
1,522,468	+		LRK54_RS07110	0.74	-0.5
1,522,468	+		LRK54_RS07110	0.74	-0.7
1,522,468	+		LRK54_RS07110	0.74	+1.0
1,522,468	+		LRK54_RS07110	0.74	-0.2
1,522,469	-		LRK54_RS07110	0.75	+1.1
1,522,469	-		LRK54_RS07110	0.75	-0.2
1,522,469	-		LRK54_RS07110	0.75	+2.3
1,522,469	-		LRK54_RS07110	0.75	+0.9
1,522,469	-		LRK54_RS07110	0.75	+0.6
1,522,469	-		LRK54_RS07110	0.75	-0.4
1,522,469	-		LRK54_RS07110	0.75	-0.2
1,522,469	-		LRK54_RS07110	0.75	-1.1
1,522,469	-		LRK54_RS07110	0.75	+0.1
1,522,469	-		LRK54_RS07110	0.75	+1.5
1,522,469	-		LRK54_RS07110	0.75	-0.4
1,522,469	-		LRK54_RS07110	0.75	-0.3
1,522,469	-		LRK54_RS07110	0.75	-0.7
1,522,469	-		LRK54_RS07110	0.75	-0.9
1,522,469	-		LRK54_RS07110	0.75	+0.3
1,522,469	-		LRK54_RS07110	0.75	-0.2
1,522,469	-		LRK54_RS07110	0.75	+0.9
1,522,551	+		LRK54_RS07110	0.84	-1.4
1,522,552	-		LRK54_RS07110	0.84	-0.4
1,522,651	+				+0.9
1,522,651	+				-0.7
1,522,651	+				+1.8
1,522,651	+				+0.2
1,522,651	+				-2.1
1,522,651	+				+0.8
1,522,651	+				-0.0
1,522,652	-				-0.4
1,522,652	-				+0.3
1,522,652	-				-1.1
1,522,652	-				-0.6
1,522,652	-				-1.4
1,522,652	-				+0.6
1,522,652	-				+0.7
1,522,672	+				+0.1
1,522,672	+				-1.6
1,522,672	+				-0.2
1,522,672	+				+0.2
1,522,672	+				-0.1
1,522,672	+				-1.1
1,522,672	+				+0.4
1,522,672	+				-0.6
1,522,672	+				+1.3
1,522,672	+				-1.5
1,522,672	+				+0.6
1,522,672	+				+0.5
1,522,672	+				-1.1
1,522,672	+				-0.8
1,522,673	-				-0.3
1,522,673	-				-0.7
1,522,673	-				-0.0
1,522,673	-				-0.7
1,522,673	-				-0.3
1,522,673	-				-1.2
1,522,673	-				-0.3
1,522,673	-				-0.5
1,522,673	-				+0.6
1,522,673	-				-0.1
1,522,673	-				-0.2
1,522,699	+				+0.6
1,522,699	+				+1.9
1,522,699	+				-0.9
1,522,699	+				-0.2
1,522,700	-				-0.8
1,522,700	-				-0.1
1,522,700	-				-1.3
1,522,700	-				-2.6
1,522,700	-				+0.8
1,522,700	-				+0.2
1,522,700	-				+0.2
1,522,700	-				-0.6
1,522,700	-				-0.1
1,522,808	+				+0.2
1,522,808	+				-0.3
1,522,808	+				-1.2
1,522,808	+				-1.1
1,522,808	+				-0.6
1,522,808	+				-0.3
1,522,808	+				-0.5
1,522,808	+				+0.5
1,522,808	+				-0.5
1,522,808	+				-0.2
1,522,808	+				-1.5
1,522,808	+				-0.8
1,522,808	+				-0.8
1,522,808	+				-0.9
1,522,808	+				-1.1
1,522,809	-				+0.9
1,522,809	-				-0.1
1,522,809	-				-1.8
1,522,809	-				+0.5
1,522,809	-				-0.1
1,522,809	-				-0.5
1,522,809	-				-0.7
1,522,809	-				+0.0
1,522,809	-				+0.9
1,522,809	-				-0.6
1,522,809	-				-0.3
1,522,809	-				-0.5
1,522,809	-				-0.5
1,522,844	+		LRK54_RS07115	0.26	+0.2
1,522,844	+		LRK54_RS07115	0.26	+0.6
1,522,844	+		LRK54_RS07115	0.26	-0.5
1,522,844	+		LRK54_RS07115	0.26	-0.8
1,522,844	+		LRK54_RS07115	0.26	-0.5
1,522,844	+		LRK54_RS07115	0.26	-0.7
1,522,844	+		LRK54_RS07115	0.26	-0.3
1,522,845	-		LRK54_RS07115	0.26	-0.6
1,522,845	-		LRK54_RS07115	0.26	-0.5
1,522,845	-		LRK54_RS07115	0.26	-0.3
1,522,845	-		LRK54_RS07115	0.26	+0.4
1,522,845	-		LRK54_RS07115	0.26	+0.5
1,522,845	-		LRK54_RS07115	0.26	-0.1
1,522,845	-		LRK54_RS07115	0.26	-0.5
1,522,845	-		LRK54_RS07115	0.26	+1.3
1,522,870	+		LRK54_RS07115	0.44	-0.9
1,522,870	+		LRK54_RS07115	0.44	-1.2
1,522,870	+		LRK54_RS07115	0.44	+0.1
1,522,870	+		LRK54_RS07115	0.44	-0.5
1,522,870	+		LRK54_RS07115	0.44	-0.3
1,522,870	+		LRK54_RS07115	0.44	+2.1
1,522,870	+		LRK54_RS07115	0.44	-1.5
1,522,870	+		LRK54_RS07115	0.44	-0.3
1,522,871	-		LRK54_RS07115	0.44	+0.5
1,522,871	-		LRK54_RS07115	0.44	+0.1
1,522,871	-		LRK54_RS07115	0.44	-0.4
1,522,871	-		LRK54_RS07115	0.44	-0.5
1,522,871	-		LRK54_RS07115	0.44	+1.3
1,522,871	-		LRK54_RS07115	0.44	-0.0
1,522,871	-		LRK54_RS07115	0.44	-0.5
1,522,871	-		LRK54_RS07115	0.44	-1.3
1,522,871	-		LRK54_RS07115	0.44	-0.8
1,522,871	-		LRK54_RS07115	0.44	+0.8
1,522,871	-		LRK54_RS07115	0.44	-0.6
1,522,871	-		LRK54_RS07115	0.44	+0.4
1,522,872	-		LRK54_RS07115	0.45	-0.1
1,523,068	+				-1.1
1,523,068	+				-1.9
1,523,068	+				-0.6
1,523,068	+				-0.3
1,523,068	+				-1.4
1,523,068	+				-0.9
1,523,068	+				-0.9
1,523,068	+				-1.8
1,523,068	+				-1.6
1,523,068	+				-1.0
1,523,068	+				-1.3
1,523,068	+				+0.7
1,523,068	+				-0.4
1,523,068	+				-1.3
1,523,068	+				-0.3
1,523,068	+				-0.5
1,523,068	+				-0.6
1,523,068	+				-1.8
1,523,068	+				-0.8
1,523,069	-				+0.7
1,523,069	-				+1.0
1,523,069	-				+0.3
1,523,069	-				+0.1
1,523,069	-				-0.0
1,523,069	-				-1.0
1,523,069	-				-0.6
1,523,069	-				-0.3
1,523,069	-				-1.3
1,523,069	-				+0.2
1,523,069	-				-0.4
1,523,069	-				-0.8
1,523,069	-				-0.8
1,523,069	-				-0.0
1,523,123	+				-1.9
1,523,124	-				-3.1
1,523,256	+		LRK54_RS07120	0.15	-1.1
1,523,256	+		LRK54_RS07120	0.15	-1.4
1,523,256	+		LRK54_RS07120	0.15	-1.0
1,523,256	+		LRK54_RS07120	0.15	-1.3
1,523,256	+		LRK54_RS07120	0.15	+0.7
1,523,256	+		LRK54_RS07120	0.15	-0.1
1,523,256	+		LRK54_RS07120	0.15	+1.0
1,523,256	+		LRK54_RS07120	0.15	-1.0
1,523,256	+		LRK54_RS07120	0.15	-0.5
1,523,256	+		LRK54_RS07120	0.15	-0.4
1,523,256	+		LRK54_RS07120	0.15	+0.1
1,523,256	+		LRK54_RS07120	0.15	-1.0
1,523,256	+		LRK54_RS07120	0.15	-1.6
1,523,257	-		LRK54_RS07120	0.16	+0.2
1,523,257	-		LRK54_RS07120	0.16	+0.4
1,523,257	-		LRK54_RS07120	0.16	-0.3
1,523,257	-		LRK54_RS07120	0.16	-0.5
1,523,257	-		LRK54_RS07120	0.16	-0.0
1,523,370	+		LRK54_RS07120	0.23	-0.6
1,523,370	+		LRK54_RS07120	0.23	-2.1
1,523,370	+		LRK54_RS07120	0.23	-1.3
1,523,370	+		LRK54_RS07120	0.23	+0.1
1,523,370	+		LRK54_RS07120	0.23	-1.1
1,523,370	+		LRK54_RS07120	0.23	-0.3
1,523,370	+		LRK54_RS07120	0.23	-0.6
1,523,370	+		LRK54_RS07120	0.23	-2.2
1,523,370	+		LRK54_RS07120	0.23	-1.1
1,523,370	+		LRK54_RS07120	0.23	-1.3
1,523,370	+		LRK54_RS07120	0.23	-0.3
1,523,370	+		LRK54_RS07120	0.23	-2.4
1,523,370	+		LRK54_RS07120	0.23	-1.1
1,523,370	+		LRK54_RS07120	0.23	-1.6
1,523,370	+		LRK54_RS07120	0.23	-0.9
1,523,370	+		LRK54_RS07120	0.23	-0.6
1,523,370	+		LRK54_RS07120	0.23	-1.1
1,523,370	+		LRK54_RS07120	0.23	+0.3
1,523,370	+		LRK54_RS07120	0.23	-2.0
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1,523,449	-		LRK54_RS07120	0.27	+0.1
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1,523,762	+		LRK54_RS07120	0.47	-1.0
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