Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06685

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
1,436,448	+				-0.3
1,436,448	+				-1.3
1,436,449	-				+0.1
1,436,449	-				+1.3
1,436,449	-				-0.6
1,436,451	+				-0.7
1,436,452	-				-0.0
1,436,453	+				-0.9
1,436,453	+				-0.2
1,436,453	+				-1.0
1,436,453	+				-0.9
1,436,453	+				+1.3
1,436,453	+				-1.1
1,436,453	+				+0.4
1,436,453	+				-2.0
1,436,454	-				-0.3
1,436,454	-				-0.5
1,436,544	+				-0.5
1,436,544	+				-0.0
1,436,544	+				-1.7
1,436,544	+				-1.3
1,436,545	-				-1.0
1,436,545	-				-1.4
1,436,545	-				-0.0
1,436,545	-				-1.4
1,436,545	-				-0.3
1,436,545	-				-1.2
1,436,545	-				-0.5
1,436,545	-				-0.2
1,436,638	+				-0.0
1,436,638	+				-1.5
1,436,638	+				+0.1
1,436,638	+				-0.9
1,436,638	+				+1.3
1,436,639	-				+2.3
1,436,639	-				+0.1
1,436,671	+				+0.9
1,437,454	+				-1.3
1,437,670	+		LRK54_RS06685	0.23	-1.7
1,437,670	+		LRK54_RS06685	0.23	-2.1
1,437,670	+		LRK54_RS06685	0.23	-0.5
1,437,670	+		LRK54_RS06685	0.23	-1.8
1,437,670	+		LRK54_RS06685	0.23	-1.0
1,437,670	+		LRK54_RS06685	0.23	-1.4
1,437,671	-		LRK54_RS06685	0.23	-2.5
1,437,671	-		LRK54_RS06685	0.23	+0.7
1,437,671	-		LRK54_RS06685	0.23	+0.7
1,437,671	-		LRK54_RS06685	0.23	-1.5
1,437,671	-		LRK54_RS06685	0.23	-0.0
1,437,671	-		LRK54_RS06685	0.23	-0.0
1,437,671	-		LRK54_RS06685	0.23	-2.2
1,437,671	-		LRK54_RS06685	0.23	-0.3
1,437,721	+		LRK54_RS06685	0.27	+0.5
1,437,721	+		LRK54_RS06685	0.27	-2.1
1,437,721	+		LRK54_RS06685	0.27	-2.1
1,437,721	+		LRK54_RS06685	0.27	-1.2
1,437,721	+		LRK54_RS06685	0.27	+2.6
1,437,721	+		LRK54_RS06685	0.27	+1.3
1,437,721	+		LRK54_RS06685	0.27	-1.4
1,437,721	+		LRK54_RS06685	0.27	-2.3
1,437,721	+		LRK54_RS06685	0.27	-0.3
1,437,722	-		LRK54_RS06685	0.27	+0.7
1,437,722	-		LRK54_RS06685	0.27	-1.7
1,437,722	-		LRK54_RS06685	0.27	-0.9
1,437,722	-		LRK54_RS06685	0.27	+1.1
1,437,722	-		LRK54_RS06685	0.27	-4.1
1,437,746	-		LRK54_RS06685	0.29	-1.3
1,437,767	-		LRK54_RS06685	0.30	-0.3
1,437,802	+		LRK54_RS06685	0.33	+0.3
1,437,802	+		LRK54_RS06685	0.33	-0.3
1,437,802	+		LRK54_RS06685	0.33	-0.3
1,437,802	+		LRK54_RS06685	0.33	-1.7
1,437,802	+		LRK54_RS06685	0.33	-0.7
1,437,803	-		LRK54_RS06685	0.33	-1.8
1,437,803	-		LRK54_RS06685	0.33	-2.0
1,437,803	-		LRK54_RS06685	0.33	-0.0
1,437,803	-		LRK54_RS06685	0.33	-2.2
1,437,803	-		LRK54_RS06685	0.33	-1.5
1,437,803	-		LRK54_RS06685	0.33	-0.7
1,437,803	-		LRK54_RS06685	0.33	+0.3
1,437,803	-		LRK54_RS06685	0.33	-0.3
1,437,803	-		LRK54_RS06685	0.33	-1.0
1,437,838	+		LRK54_RS06685	0.36	-2.7
1,437,838	+		LRK54_RS06685	0.36	-0.0
1,437,838	+		LRK54_RS06685	0.36	-2.2
1,437,838	+		LRK54_RS06685	0.36	-0.0
1,437,838	+		LRK54_RS06685	0.36	-2.4
1,437,838	+		LRK54_RS06685	0.36	-0.0
1,437,838	+		LRK54_RS06685	0.36	-0.0
1,437,838	+		LRK54_RS06685	0.36	-0.9
1,437,838	+		LRK54_RS06685	0.36	-1.0
1,437,838	+		LRK54_RS06685	0.36	-2.1
1,437,838	+		LRK54_RS06685	0.36	-1.2
1,437,838	+		LRK54_RS06685	0.36	+0.7
1,437,838	+		LRK54_RS06685	0.36	-0.9
1,437,839	-		LRK54_RS06685	0.36	-1.6
1,437,839	-		LRK54_RS06685	0.36	+0.3
1,437,839	-		LRK54_RS06685	0.36	+0.7
1,437,839	-		LRK54_RS06685	0.36	-1.3
1,437,839	-		LRK54_RS06685	0.36	+0.3
1,437,839	-		LRK54_RS06685	0.36	+0.3
1,437,839	-		LRK54_RS06685	0.36	+0.3
1,437,839	-		LRK54_RS06685	0.36	-0.5
1,437,839	-		LRK54_RS06685	0.36	-2.0
1,437,892	+		LRK54_RS06685	0.40	-0.1
1,437,892	+		LRK54_RS06685	0.40	-0.9
1,437,892	+		LRK54_RS06685	0.40	-0.0
1,437,892	+		LRK54_RS06685	0.40	-1.5
1,437,892	+		LRK54_RS06685	0.40	-1.9
1,437,892	+		LRK54_RS06685	0.40	-3.0
1,437,893	-		LRK54_RS06685	0.40	-0.5
1,437,893	-		LRK54_RS06685	0.40	-1.7
1,437,893	-		LRK54_RS06685	0.40	-0.9
1,437,907	+		LRK54_RS06685	0.41	-2.9
1,437,907	+		LRK54_RS06685	0.41	-1.8
1,437,907	+		LRK54_RS06685	0.41	-1.0
1,437,907	+		LRK54_RS06685	0.41	-1.3
1,437,907	+		LRK54_RS06685	0.41	-2.5
1,437,907	+		LRK54_RS06685	0.41	+1.1
1,437,907	+		LRK54_RS06685	0.41	-1.4
1,437,907	+		LRK54_RS06685	0.41	-1.1
1,437,907	+		LRK54_RS06685	0.41	-0.9
1,437,908	-		LRK54_RS06685	0.41	+2.3
1,437,908	-		LRK54_RS06685	0.41	-0.4
1,437,908	-		LRK54_RS06685	0.41	-1.1
1,437,908	-		LRK54_RS06685	0.41	+0.3
1,437,908	-		LRK54_RS06685	0.41	-0.4
1,437,908	-		LRK54_RS06685	0.41	-2.1
1,437,908	-		LRK54_RS06685	0.41	-3.4
1,437,908	-		LRK54_RS06685	0.41	-2.5
1,437,910	+		LRK54_RS06685	0.41	+1.3
1,437,910	+		LRK54_RS06685	0.41	-0.3
1,437,910	+		LRK54_RS06685	0.41	-2.7
1,437,910	+		LRK54_RS06685	0.41	-1.6
1,437,910	+		LRK54_RS06685	0.41	-0.9
1,437,910	+		LRK54_RS06685	0.41	-1.9
1,437,910	+		LRK54_RS06685	0.41	-0.0
1,437,910	+		LRK54_RS06685	0.41	+0.3
1,437,910	+		LRK54_RS06685	0.41	-2.7
1,437,910	+		LRK54_RS06685	0.41	-1.5
1,437,910	+		LRK54_RS06685	0.41	-2.7
1,437,910	+		LRK54_RS06685	0.41	+0.1
1,437,910	+		LRK54_RS06685	0.41	-1.4
1,437,910	+		LRK54_RS06685	0.41	-1.2
1,437,910	+		LRK54_RS06685	0.41	-2.8
1,437,910	+		LRK54_RS06685	0.41	-0.7
1,437,910	+		LRK54_RS06685	0.41	-1.2
1,437,911	-		LRK54_RS06685	0.41	-0.3
1,437,911	-		LRK54_RS06685	0.41	+0.3
1,437,911	-		LRK54_RS06685	0.41	-0.0
1,437,911	-		LRK54_RS06685	0.41	-2.9
1,437,911	-		LRK54_RS06685	0.41	-2.4
1,437,911	-		LRK54_RS06685	0.41	-1.5
1,437,911	-		LRK54_RS06685	0.41	-0.9
1,437,911	-		LRK54_RS06685	0.41	-1.2
1,437,911	-		LRK54_RS06685	0.41	-1.2
1,437,911	-		LRK54_RS06685	0.41	-2.1
1,437,911	-		LRK54_RS06685	0.41	+2.3
1,437,911	-		LRK54_RS06685	0.41	-0.3
1,437,911	-		LRK54_RS06685	0.41	-2.8
1,437,911	-		LRK54_RS06685	0.41	-0.5
1,438,114	+		LRK54_RS06685	0.57	-1.0
1,438,114	+		LRK54_RS06685	0.57	-0.9
1,438,114	+		LRK54_RS06685	0.57	-0.9
1,438,114	+		LRK54_RS06685	0.57	-0.9
1,438,114	+		LRK54_RS06685	0.57	-2.9
1,438,114	+		LRK54_RS06685	0.57	-3.3
1,438,114	+		LRK54_RS06685	0.57	-0.7
1,438,114	+		LRK54_RS06685	0.57	-1.9
1,438,114	+		LRK54_RS06685	0.57	-1.6
1,438,114	+		LRK54_RS06685	0.57	-0.5
1,438,114	+		LRK54_RS06685	0.57	-0.4
1,438,114	+		LRK54_RS06685	0.57	-1.4
1,438,114	+		LRK54_RS06685	0.57	-0.5
1,438,115	-		LRK54_RS06685	0.57	-0.7
1,438,115	-		LRK54_RS06685	0.57	-1.2
1,438,115	-		LRK54_RS06685	0.57	-3.3
1,438,115	-		LRK54_RS06685	0.57	-0.5
1,438,115	-				+1.3
1,438,115	-		LRK54_RS06685	0.57	-2.1
1,438,115	-		LRK54_RS06685	0.57	-3.1
1,438,115	-		LRK54_RS06685	0.57	-2.8
1,438,115	-		LRK54_RS06685	0.57	-1.7
1,438,115	-		LRK54_RS06685	0.57	-0.5
1,438,115	-		LRK54_RS06685	0.57	-1.5
1,438,115	-		LRK54_RS06685	0.57	-0.7
1,438,115	-		LRK54_RS06685	0.57	-0.0
1,438,115	-		LRK54_RS06685	0.57	+1.3
1,438,115	-		LRK54_RS06685	0.57	-2.1
1,438,115	-		LRK54_RS06685	0.57	-0.9
1,438,115	-		LRK54_RS06685	0.57	+0.6
1,438,166	+		LRK54_RS06685	0.61	-1.2
1,438,166	+		LRK54_RS06685	0.61	+0.3
1,438,166	+		LRK54_RS06685	0.61	-1.6
1,438,167	-		LRK54_RS06685	0.61	-0.5
1,438,167	-		LRK54_RS06685	0.61	-0.9
1,438,167	-		LRK54_RS06685	0.61	+0.3
1,438,192	+		LRK54_RS06685	0.63	+0.3
1,438,192	+		LRK54_RS06685	0.63	-0.3
1,438,192	+		LRK54_RS06685	0.63	-3.1
1,438,193	-		LRK54_RS06685	0.63	+2.3
1,438,193	-		LRK54_RS06685	0.63	+0.7
1,438,193	-		LRK54_RS06685	0.63	-0.7
1,438,237	+		LRK54_RS06685	0.66	-0.3
1,438,238	-		LRK54_RS06685	0.66	-1.3
1,438,330	+				+0.7
1,438,330	+		LRK54_RS06685	0.74	-0.2
1,438,330	+		LRK54_RS06685	0.74	-0.7
1,438,330	+		LRK54_RS06685	0.74	-0.3
1,438,330	+		LRK54_RS06685	0.74	-0.3
1,438,330	+		LRK54_RS06685	0.74	-1.4
1,438,330	+		LRK54_RS06685	0.74	-2.6
1,438,330	+		LRK54_RS06685	0.74	-0.5
1,438,330	+		LRK54_RS06685	0.74	-0.0
1,438,330	+		LRK54_RS06685	0.74	-2.2
1,438,330	+		LRK54_RS06685	0.74	+0.3
1,438,331	-		LRK54_RS06685	0.74	+1.3
1,438,331	-		LRK54_RS06685	0.74	-1.0
1,438,331	-		LRK54_RS06685	0.74	-1.3
1,438,399	+		LRK54_RS06685	0.79	-0.9
1,438,399	+		LRK54_RS06685	0.79	+0.7
1,438,399	+		LRK54_RS06685	0.79	-1.8
1,438,399	+		LRK54_RS06685	0.79	-0.3
1,438,399	+		LRK54_RS06685	0.79	-0.7
1,438,399	+		LRK54_RS06685	0.79	-0.7
1,438,399	+		LRK54_RS06685	0.79	-0.0
1,438,399	+		LRK54_RS06685	0.79	+0.7
1,438,399	+		LRK54_RS06685	0.79	+0.7
1,438,399	+		LRK54_RS06685	0.79	-0.0
1,438,399	+		LRK54_RS06685	0.79	-2.2
1,438,399	+		LRK54_RS06685	0.79	-1.2
1,438,399	+		LRK54_RS06685	0.79	-1.4
1,438,399	+		LRK54_RS06685	0.79	+0.3
1,438,399	+		LRK54_RS06685	0.79	-1.0
1,438,400	-		LRK54_RS06685	0.79	-0.9
1,438,400	-		LRK54_RS06685	0.79	-0.7
1,438,400	-		LRK54_RS06685	0.79	+0.7
1,438,400	-		LRK54_RS06685	0.79	-1.8
1,438,400	-		LRK54_RS06685	0.79	-2.1
1,438,400	-		LRK54_RS06685	0.79	-0.5
1,438,400	-		LRK54_RS06685	0.79	-1.6
1,438,400	-		LRK54_RS06685	0.79	-1.3
1,438,400	-		LRK54_RS06685	0.79	+1.7
1,438,400	-		LRK54_RS06685	0.79	-2.6
1,438,400	-		LRK54_RS06685	0.79	-0.7
1,438,400	-		LRK54_RS06685	0.79	-0.7
1,438,400	-		LRK54_RS06685	0.79	-0.9
1,438,400	-		LRK54_RS06685	0.79	-0.7
1,438,400	-		LRK54_RS06685	0.79	-1.0
1,438,400	-		LRK54_RS06685	0.79	-2.5
1,438,400	-		LRK54_RS06685	0.79	-0.7
1,438,400	-		LRK54_RS06685	0.79	+1.3
1,438,400	-		LRK54_RS06685	0.79	-1.0
1,438,400	-		LRK54_RS06685	0.79	-3.6
1,438,400	-		LRK54_RS06685	0.79	-1.8
1,438,402	+		LRK54_RS06685	0.79	-2.2
1,438,402	+		LRK54_RS06685	0.79	-1.8
1,438,402	+		LRK54_RS06685	0.79	-1.2
1,438,402	+		LRK54_RS06685	0.79	+1.7
1,438,402	+		LRK54_RS06685	0.79	-2.0
1,438,402	+		LRK54_RS06685	0.79	-1.4
1,438,403	-		LRK54_RS06685	0.79	-0.3
1,438,403	-		LRK54_RS06685	0.79	-0.0
1,438,502	+		LRK54_RS06685	0.87	-0.7
1,438,502	+		LRK54_RS06685	0.87	-2.7
1,438,502	+		LRK54_RS06685	0.87	-1.7
1,438,503	-		LRK54_RS06685	0.87	-2.9
1,438,503	-		LRK54_RS06685	0.87	-1.0
1,438,503	-		LRK54_RS06685	0.87	-0.5
1,438,567	+				-1.2
1,438,567	+				+1.7
1,438,567	+				-2.4
1,438,567	+				-0.5
1,438,567	+				-0.5
1,438,567	+				-1.8
1,438,567	+				-0.7
1,438,567	+				-1.3
1,438,568	-				-1.5
1,438,568	-				-2.1
1,438,568	-				-1.8
1,438,568	-				-2.0
1,438,568	-				+0.3
1,438,568	-				-2.0
1,438,568	-				-2.3
1,438,568	-				-2.3
1,438,568	-				-0.9
1,438,672	+				-0.4
1,438,672	+				+0.0
1,438,672	+				+1.6
1,438,672	+				-0.5
1,438,672	+				-1.0
1,438,673	-				+0.2
1,438,673	-				-1.0
1,438,673	-				-1.1
1,438,673	-				+0.3
1,438,673	-				+1.0
1,438,673	-				+1.3
1,438,673	-				-0.2
1,438,673	-				-1.9
1,438,673	-				-0.2
1,438,673	-				-0.2
1,438,673	-				-1.2
1,438,673	-				+0.9