Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06470

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
1,389,493	+		LRK54_RS06465	0.65	+1.7
1,389,493	+		LRK54_RS06465	0.65	-0.3
1,389,493	+		LRK54_RS06465	0.65	-0.2
1,389,493	+		LRK54_RS06465	0.65	-0.5
1,389,493	+		LRK54_RS06465	0.65	-0.5
1,389,494	-		LRK54_RS06465	0.65	-0.7
1,389,494	-		LRK54_RS06465	0.65	-0.4
1,389,494	-		LRK54_RS06465	0.65	-0.7
1,389,494	-		LRK54_RS06465	0.65	+0.3
1,389,494	-		LRK54_RS06465	0.65	-0.6
1,389,494	-		LRK54_RS06465	0.65	+0.5
1,389,494	-		LRK54_RS06465	0.65	-0.7
1,389,595	+		LRK54_RS06465	0.70	-0.5
1,389,826	+		LRK54_RS06465	0.82	-0.1
1,389,826	+		LRK54_RS06465	0.82	+0.6
1,389,826	+		LRK54_RS06465	0.82	-0.7
1,389,827	-		LRK54_RS06465	0.83	-1.3
1,389,850	+		LRK54_RS06465	0.84	+1.0
1,389,850	+		LRK54_RS06465	0.84	+0.3
1,389,850	+		LRK54_RS06465	0.84	+0.6
1,389,851	-		LRK54_RS06465	0.84	+0.1
1,389,895	+		LRK54_RS06465	0.86	-0.7
1,389,895	+		LRK54_RS06465	0.86	-0.4
1,389,895	+		LRK54_RS06465	0.86	-0.6
1,389,895	+		LRK54_RS06465	0.86	+1.3
1,389,896	-		LRK54_RS06465	0.86	-0.0
1,390,027	+				+0.5
1,390,027	+				+0.1
1,390,027	+				+1.5
1,390,027	+				+0.6
1,390,027	+				+0.6
1,390,027	+				-0.4
1,390,027	+				-0.9
1,390,027	+				-0.1
1,390,027	+				+1.5
1,390,027	+				-0.4
1,390,027	+				-0.6
1,390,028	-				+0.5
1,390,028	-				-0.3
1,390,028	-				-0.4
1,390,028	-				+0.1
1,390,028	-				-0.2
1,390,028	-				+0.9
1,390,028	-				-2.0
1,390,082	-				-0.7
1,390,082	-				-0.3
1,390,141	+				+0.4
1,390,142	-				-2.1
1,390,150	+				-1.8
1,390,150	+				+0.0
1,390,150	+				-0.2
1,390,150	+				+0.1
1,390,150	+				+0.2
1,390,150	+				-0.6
1,390,150	+				-0.4
1,390,150	+				-1.3
1,390,150	+				-1.6
1,390,151	-				+0.6
1,390,151	-				-0.1
1,390,151	-				+0.1
1,390,151	-				+1.2
1,390,151	-				-0.7
1,390,151	-				-0.5
1,390,151	-				+1.5
1,390,151	-				-1.0
1,390,151	-				+0.5
1,390,151	-				+0.2
1,390,151	-				+0.7
1,390,151	-				+2.0
1,390,151	-				-0.9
1,390,236	+				+0.1
1,390,236	+				+0.4
1,390,237	-				-0.5
1,390,295	+				+0.2
1,390,296	-				-0.3
1,390,331	+				-0.1
1,390,331	+				+0.4
1,390,331	+				+0.3
1,390,331	+				+0.7
1,390,331	+				-0.9
1,390,331	+				-2.3
1,390,331	+				-0.4
1,390,331	+				-0.7
1,390,331	+				-2.2
1,390,331	+				-0.9
1,390,332	-				+0.3
1,390,332	-				-0.5
1,390,332	-				+0.6
1,390,332	-				+1.3
1,390,332	-				+1.7
1,390,332	-				-0.9
1,390,332	-				-0.3
1,390,332	-				-1.8
1,390,332	-				-1.8
1,390,332	-				-0.9
1,390,332	-				+0.1
1,390,332	-				-1.9
1,390,332	-				+0.1
1,390,332	-				-0.5
1,390,332	-				+0.1
1,390,332	-				+0.7
1,390,332	-				+1.5
1,390,368	+				-0.4
1,390,369	-				-0.3
1,390,773	+		LRK54_RS06470	0.21	+0.3
1,390,773	+		LRK54_RS06470	0.21	+0.5
1,390,773	+		LRK54_RS06470	0.21	-1.0
1,390,773	+		LRK54_RS06470	0.21	-0.3
1,390,774	-		LRK54_RS06470	0.21	-2.0
1,390,774	-		LRK54_RS06470	0.21	-0.3
1,390,800	+		LRK54_RS06470	0.22	+0.3
1,390,842	+		LRK54_RS06470	0.24	-0.8
1,390,843	-		LRK54_RS06470	0.24	-1.2
1,390,843	-		LRK54_RS06470	0.24	-2.2
1,391,076	+		LRK54_RS06470	0.35	-0.9
1,391,076	+		LRK54_RS06470	0.35	-1.0
1,391,076	+		LRK54_RS06470	0.35	+0.7
1,391,076	+		LRK54_RS06470	0.35	-1.3
1,391,076	+		LRK54_RS06470	0.35	-0.0
1,391,076	+		LRK54_RS06470	0.35	-1.3
1,391,076	+		LRK54_RS06470	0.35	-1.7
1,391,076	+		LRK54_RS06470	0.35	-0.3
1,391,077	-		LRK54_RS06470	0.35	-0.0
1,391,077	-		LRK54_RS06470	0.35	-1.2
1,391,077	-		LRK54_RS06470	0.35	-1.0
1,391,077	-		LRK54_RS06470	0.35	-0.9
1,391,077	-		LRK54_RS06470	0.35	+0.3
1,391,077	-		LRK54_RS06470	0.35	-1.4
1,391,077	-		LRK54_RS06470	0.35	+1.3
1,391,077	-		LRK54_RS06470	0.35	+0.3
1,391,077	-		LRK54_RS06470	0.35	+0.6
1,391,077	-		LRK54_RS06470	0.35	-1.0
1,391,077	-		LRK54_RS06470	0.35	-1.6
1,391,077	-		LRK54_RS06470	0.35	-2.2
1,391,409	+		LRK54_RS06470	0.50	-0.9
1,391,409	+		LRK54_RS06470	0.50	-1.3
1,391,409	+		LRK54_RS06470	0.50	-1.4
1,391,409	+		LRK54_RS06470	0.50	-1.5
1,391,410	-		LRK54_RS06470	0.50	-0.7
1,391,410	-		LRK54_RS06470	0.50	-1.4
1,391,410	-		LRK54_RS06470	0.50	-0.7
1,391,410	-		LRK54_RS06470	0.50	+1.3
1,391,587	+		LRK54_RS06470	0.58	-1.0
1,391,588	-		LRK54_RS06470	0.58	+0.6
1,391,588	-		LRK54_RS06470	0.58	-0.0
1,391,754	+		LRK54_RS06470	0.65	-0.5
1,391,754	+		LRK54_RS06470	0.65	-1.0
1,391,754	+		LRK54_RS06470	0.65	-1.3
1,391,754	+		LRK54_RS06470	0.65	-0.0
1,391,754	+		LRK54_RS06470	0.65	-1.0
1,391,755	-		LRK54_RS06470	0.65	-2.7
1,391,755	-		LRK54_RS06470	0.65	+1.3
1,391,755	-		LRK54_RS06470	0.65	-1.2
1,391,755	-		LRK54_RS06470	0.65	-2.6
1,391,755	-		LRK54_RS06470	0.65	-0.5
1,391,755	-		LRK54_RS06470	0.65	+0.3
1,391,755	-		LRK54_RS06470	0.65	-0.5
1,391,755	-		LRK54_RS06470	0.65	-0.9
1,391,755	-		LRK54_RS06470	0.65	-0.5
1,391,755	-		LRK54_RS06470	0.65	-0.9
1,391,755	-		LRK54_RS06470	0.65	-0.7
1,391,755	-		LRK54_RS06470	0.65	-0.3
1,391,755	-		LRK54_RS06470	0.65	-0.5
1,391,755	-		LRK54_RS06470	0.65	-1.5
1,391,845	-		LRK54_RS06470	0.69	-0.5
1,391,845	-		LRK54_RS06470	0.69	+0.3
1,391,845	-		LRK54_RS06470	0.69	-1.5
1,391,874	+		LRK54_RS06470	0.70	-1.3
1,391,874	+		LRK54_RS06470	0.70	-0.5
1,391,875	-		LRK54_RS06470	0.70	-1.4
1,391,934	+		LRK54_RS06470	0.73	-1.2
1,391,934	+		LRK54_RS06470	0.73	-0.5
1,391,935	-		LRK54_RS06470	0.73	+0.3
1,391,935	-		LRK54_RS06470	0.73	-0.5
1,391,943	+		LRK54_RS06470	0.73	-0.3
1,391,944	-		LRK54_RS06470	0.73	-0.9
1,391,944	-		LRK54_RS06470	0.73	-1.2
1,392,090	+		LRK54_RS06470	0.80	-0.7
1,392,090	+		LRK54_RS06470	0.80	-1.0
1,392,090	+		LRK54_RS06470	0.80	+0.6
1,392,090	+		LRK54_RS06470	0.80	-2.0
1,392,090	+		LRK54_RS06470	0.80	-0.3
1,392,090	+		LRK54_RS06470	0.80	-3.0
1,392,090	+		LRK54_RS06470	0.80	+0.7
1,392,090	+		LRK54_RS06470	0.80	-3.3
1,392,090	+		LRK54_RS06470	0.80	-0.0
1,392,090	+		LRK54_RS06470	0.80	+0.7
1,392,090	+		LRK54_RS06470	0.80	-1.0
1,392,090	+		LRK54_RS06470	0.80	-2.7
1,392,090	+		LRK54_RS06470	0.80	-0.0
1,392,090	+		LRK54_RS06470	0.80	-2.7
1,392,090	+		LRK54_RS06470	0.80	-0.7
1,392,090	+		LRK54_RS06470	0.80	+0.4
1,392,090	+		LRK54_RS06470	0.80	-2.7
1,392,090	+				+1.0
1,392,090	+		LRK54_RS06470	0.80	-1.4
1,392,091	-		LRK54_RS06470	0.80	-0.5
1,392,091	-		LRK54_RS06470	0.80	-1.2
1,392,091	-		LRK54_RS06470	0.80	-1.4
1,392,091	-		LRK54_RS06470	0.80	-1.4
1,392,091	-		LRK54_RS06470	0.80	-1.3
1,392,091	-		LRK54_RS06470	0.80	-0.7
1,392,091	-		LRK54_RS06470	0.80	-0.5
1,392,091	-		LRK54_RS06470	0.80	-0.9
1,392,091	-		LRK54_RS06470	0.80	-1.3
1,392,091	-		LRK54_RS06470	0.80	-0.2
1,392,091	-		LRK54_RS06470	0.80	+1.0
1,392,091	-		LRK54_RS06470	0.80	+1.3
1,392,091	-		LRK54_RS06470	0.80	-1.9
1,392,091	-		LRK54_RS06470	0.80	-2.7
1,392,091	-		LRK54_RS06470	0.80	+1.7
1,392,091	-		LRK54_RS06470	0.80	-1.7
1,392,091	-		LRK54_RS06470	0.80	+1.1
1,392,141	+		LRK54_RS06470	0.82	-0.9
1,392,141	+		LRK54_RS06470	0.82	-1.7
1,392,141	+		LRK54_RS06470	0.82	-0.9
1,392,141	+		LRK54_RS06470	0.82	-2.7
1,392,141	+		LRK54_RS06470	0.82	-0.3
1,392,142	-		LRK54_RS06470	0.82	-2.2
1,392,142	-		LRK54_RS06470	0.82	-0.0
1,392,142	-		LRK54_RS06470	0.82	-2.0
1,392,142	-		LRK54_RS06470	0.82	-1.5
1,392,142	-		LRK54_RS06470	0.82	-2.5
1,392,142	-		LRK54_RS06470	0.82	+0.7
1,392,142	-		LRK54_RS06470	0.82	-1.8
1,392,171	+		LRK54_RS06470	0.84	-0.0
1,392,171	+		LRK54_RS06470	0.84	-2.9
1,392,171	+		LRK54_RS06470	0.84	-1.8
1,392,171	+		LRK54_RS06470	0.84	-0.2
1,392,171	+		LRK54_RS06470	0.84	-1.2
1,392,171	+		LRK54_RS06470	0.84	+0.7
1,392,171	+		LRK54_RS06470	0.84	-1.1
1,392,171	+		LRK54_RS06470	0.84	-1.7
1,392,172	-		LRK54_RS06470	0.84	-0.5
1,392,172	-		LRK54_RS06470	0.84	-2.2
1,392,172	-		LRK54_RS06470	0.84	-0.9
1,392,172	-		LRK54_RS06470	0.84	+0.5
1,392,172	-		LRK54_RS06470	0.84	-2.3
1,392,172	-		LRK54_RS06470	0.84	-2.1
1,392,172	-		LRK54_RS06470	0.84	+0.6
1,392,172	-		LRK54_RS06470	0.84	+0.3
1,392,172	-		LRK54_RS06470	0.84	-0.5
1,392,172	-		LRK54_RS06470	0.84	+0.7
1,392,172	-		LRK54_RS06470	0.84	-1.7
1,392,172	-		LRK54_RS06470	0.84	-2.1
1,392,306	+		LRK54_RS06470	0.90	+0.3
1,392,306	+		LRK54_RS06470	0.90	+0.3
1,392,306	+		LRK54_RS06470	0.90	-1.0
1,392,306	+		LRK54_RS06470	0.90	-1.5
1,392,306	+		LRK54_RS06470	0.90	-1.0
1,392,306	+		LRK54_RS06470	0.90	-2.7
1,392,306	+		LRK54_RS06470	0.90	-0.7
1,392,307	-		LRK54_RS06470	0.90	-1.2
1,392,307	-		LRK54_RS06470	0.90	-1.2
1,392,307	-		LRK54_RS06470	0.90	-1.5
1,392,307	-		LRK54_RS06470	0.90	-0.9
1,392,307	-		LRK54_RS06470	0.90	-0.3
1,392,315	+				-0.5
1,392,315	+				-1.0
1,392,315	+				-0.9
1,392,315	+				-2.1
1,392,315	+				-1.4
1,392,315	+				-3.1
1,392,315	+				-0.5
1,392,315	+				-0.4
1,392,316	-				-1.2
1,392,316	-				+1.0
1,392,316	-				-0.0
1,392,316	-				-1.7
1,392,316	-				-1.3
1,392,316	-				-0.5
1,392,316	-				-0.6
1,392,316	-				-0.3
1,392,316	-				-1.9
1,392,316	-				+0.7
1,392,316	-				-0.9
1,392,316	-				-0.9
1,392,357	+				-1.8
1,392,358	-				-1.3
1,392,358	-				-0.9
1,392,596	+				-0.5
1,392,596	+				+0.4
1,392,596	+				-2.4
1,392,596	+				-2.4
1,392,596	+				-0.7
1,392,596	+				-1.1
1,392,596	+				-0.7
1,392,596	+				+0.3
1,392,597	-				-0.9
1,392,597	-				-0.6
1,392,597	-				-1.8
1,392,597	-				-1.1
1,392,597	-				-0.3
1,392,689	+		LRK54_RS06475	0.14	-0.9
1,392,728	+		LRK54_RS06475	0.18	+2.3
1,392,728	+		LRK54_RS06475	0.18	-1.3
1,392,728	+		LRK54_RS06475	0.18	-1.9
1,392,729	-		LRK54_RS06475	0.18	-0.7
1,392,729	-		LRK54_RS06475	0.18	-1.2
1,392,729	-		LRK54_RS06475	0.18	+0.2
1,392,891	-		LRK54_RS06475	0.34	-0.3
1,392,891	-		LRK54_RS06475	0.34	-1.3
1,392,891	-		LRK54_RS06475	0.34	-0.8
1,392,891	-		LRK54_RS06475	0.34	-1.9
1,392,891	-		LRK54_RS06475	0.34	-0.3
1,392,891	-		LRK54_RS06475	0.34	-0.0
1,393,139	+		LRK54_RS06475	0.59	-1.9
1,393,139	+		LRK54_RS06475	0.59	-1.2
1,393,139	+		LRK54_RS06475	0.59	-0.2
1,393,139	+		LRK54_RS06475	0.59	-0.0
1,393,139	+		LRK54_RS06475	0.59	-2.2
1,393,139	+		LRK54_RS06475	0.59	-1.4
1,393,139	+		LRK54_RS06475	0.59	-1.7
1,393,139	+		LRK54_RS06475	0.59	-0.5
1,393,139	+		LRK54_RS06475	0.59	-1.5
1,393,139	+		LRK54_RS06475	0.59	-0.5
1,393,139	+		LRK54_RS06475	0.59	-0.9
1,393,139	+		LRK54_RS06475	0.59	-1.7
1,393,139	+		LRK54_RS06475	0.59	-1.7
1,393,139	+		LRK54_RS06475	0.59	-1.5
1,393,139	+		LRK54_RS06475	0.59	-1.0
1,393,139	+		LRK54_RS06475	0.59	-2.1
1,393,140	-		LRK54_RS06475	0.59	+1.3
1,393,140	-		LRK54_RS06475	0.59	-1.2
1,393,140	-		LRK54_RS06475	0.59	-0.8
1,393,140	-		LRK54_RS06475	0.59	-2.5
1,393,140	-		LRK54_RS06475	0.59	-2.4
1,393,140	-		LRK54_RS06475	0.59	-0.3
1,393,140	-		LRK54_RS06475	0.59	+0.7
1,393,140	-		LRK54_RS06475	0.59	+0.1
1,393,140	-		LRK54_RS06475	0.59	-0.8
1,393,140	-		LRK54_RS06475	0.59	-2.2
1,393,140	-		LRK54_RS06475	0.59	-0.6
1,393,140	-		LRK54_RS06475	0.59	-0.6
1,393,140	-		LRK54_RS06475	0.59	-1.8
1,393,140	-		LRK54_RS06475	0.59	-1.2
1,393,140	-		LRK54_RS06475	0.59	-0.4
1,393,140	-		LRK54_RS06475	0.59	-0.8
1,393,140	-		LRK54_RS06475	0.59	-0.9