Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06225

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
1,332,376	+		LRK54_RS06215	0.39	-1.8
1,332,376	+		LRK54_RS06215	0.39	-1.4
1,332,376	+		LRK54_RS06215	0.39	-0.5
1,332,376	+		LRK54_RS06215	0.39	-0.9
1,332,376	+		LRK54_RS06215	0.39	-0.3
1,332,376	+		LRK54_RS06215	0.39	-0.1
1,332,376	+		LRK54_RS06215	0.39	-0.7
1,332,377	-		LRK54_RS06215	0.39	-0.3
1,332,377	-		LRK54_RS06215	0.39	+0.6
1,332,377	-		LRK54_RS06215	0.39	+0.3
1,332,377	-		LRK54_RS06215	0.39	+0.5
1,332,377	-		LRK54_RS06215	0.39	+0.3
1,332,377	-		LRK54_RS06215	0.39	-0.5
1,332,377	-		LRK54_RS06215	0.39	-0.9
1,332,377	-		LRK54_RS06215	0.39	+0.1
1,332,583	+				-2.3
1,332,583	+				-0.5
1,332,583	+				+0.7
1,332,583	+				+0.5
1,332,583	+				-1.9
1,332,583	+				+0.1
1,332,583	+				+0.8
1,332,583	+				+0.3
1,332,584	-				+0.3
1,332,584	-				+1.3
1,332,584	-				-0.8
1,332,584	-				-1.3
1,332,584	-				-0.6
1,332,584	-				-0.7
1,332,584	-				-0.4
1,332,584	-				+1.3
1,332,598	+				+1.3
1,332,598	+				+0.1
1,332,598	+				-1.6
1,332,598	+				-1.6
1,332,598	+				-1.1
1,332,598	+				-0.4
1,332,598	+				-1.1
1,332,598	+				-0.4
1,332,598	+				-1.0
1,332,598	+				+0.3
1,332,598	+				-0.2
1,332,598	+				+1.2
1,332,598	+				+0.6
1,332,599	-				-0.6
1,332,599	-				-0.9
1,332,599	-				+0.3
1,332,599	-				+1.3
1,332,599	-				+0.0
1,332,599	-				+0.3
1,332,599	-				-0.0
1,332,599	-				+2.8
1,332,599	-				-0.2
1,332,599	-				+0.5
1,332,599	-				+1.0
1,332,599	-				-0.2
1,332,642	+				-0.8
1,333,075	+		LRK54_RS06220	0.75	-0.1
1,333,075	+		LRK54_RS06220	0.75	-0.6
1,333,075	+		LRK54_RS06220	0.75	-0.9
1,333,075	+		LRK54_RS06220	0.75	-0.5
1,333,075	+		LRK54_RS06220	0.75	-0.3
1,333,076	-		LRK54_RS06220	0.75	+0.2
1,333,076	-		LRK54_RS06220	0.75	-0.4
1,333,076	-		LRK54_RS06220	0.75	-1.0
1,333,076	-		LRK54_RS06220	0.75	-0.7
1,333,076	-		LRK54_RS06220	0.75	-0.6
1,333,076	-		LRK54_RS06220	0.75	+1.0
1,333,076	-		LRK54_RS06220	0.75	+0.6
1,333,076	-		LRK54_RS06220	0.75	-0.0
1,333,076	-		LRK54_RS06220	0.75	-0.6
1,333,076	-		LRK54_RS06220	0.75	-0.1
1,333,076	-		LRK54_RS06220	0.75	+2.1
1,333,076	-		LRK54_RS06220	0.75	-0.0
1,333,076	-		LRK54_RS06220	0.75	-0.1
1,333,076	-		LRK54_RS06220	0.75	-0.3
1,333,076	-		LRK54_RS06220	0.75	-0.7
1,333,286	+		LRK54_RS06225	0.31	+0.4
1,333,286	+		LRK54_RS06225	0.31	+2.1
1,333,286	+		LRK54_RS06225	0.31	+1.8
1,333,286	+		LRK54_RS06225	0.31	+1.1
1,333,286	+		LRK54_RS06225	0.31	+0.4
1,333,287	-		LRK54_RS06225	0.31	+0.3
1,333,287	-		LRK54_RS06225	0.31	-1.5
1,333,459	+				+1.7
1,333,460	-				-0.4
1,333,460	-				+0.2
1,333,460	-				-0.5
1,333,564	+				-0.6
1,333,564	+				-0.2
1,333,564	+				-1.1
1,333,564	+				+0.4
1,333,564	+				+1.0
1,333,564	+				-0.3
1,333,564	+				+1.0
1,333,564	+				+1.5
1,333,564	+				-0.2
1,333,564	+				-0.3
1,333,564	+				+0.3
1,333,564	+				+1.6
1,333,564	+				-0.3
1,333,564	+				-0.5
1,333,564	+				-0.0
1,333,564	+				+0.3
1,333,564	+				+0.7
1,333,564	+				-0.5
1,333,565	-				-1.4
1,333,565	-				-1.3
1,333,565	-				+0.0
1,333,565	-				-0.4
1,333,565	-				-0.2
1,333,565	-				-0.0
1,333,565	-				-0.1
1,333,565	-				-0.2
1,333,565	-				-0.6
1,333,565	-				-1.8
1,333,785	+				-0.8
1,333,786	-				-0.0
1,333,786	-				+1.7
1,333,839	+				+0.5
1,333,839	+				+0.3
1,333,840	-				-0.0
1,333,840	-				-0.3
1,333,840	-				-0.0
1,333,998	+		LRK54_RS06230	0.19	-1.3
1,333,998	+		LRK54_RS06230	0.19	-0.9
1,333,998	+		LRK54_RS06230	0.19	-0.2
1,333,998	+		LRK54_RS06230	0.19	+1.7
1,333,998	+		LRK54_RS06230	0.19	-0.1
1,333,998	+		LRK54_RS06230	0.19	+0.6
1,333,998	+		LRK54_RS06230	0.19	-1.5
1,333,998	+		LRK54_RS06230	0.19	-0.0
1,333,998	+		LRK54_RS06230	0.19	-0.5
1,333,998	+		LRK54_RS06230	0.19	-1.1
1,333,998	+		LRK54_RS06230	0.19	-1.8
1,333,998	+		LRK54_RS06230	0.19	-1.5
1,333,999	-		LRK54_RS06230	0.19	+0.1
1,333,999	-		LRK54_RS06230	0.19	+1.0
1,333,999	-		LRK54_RS06230	0.19	-0.3
1,333,999	-		LRK54_RS06230	0.19	+0.3
1,333,999	-		LRK54_RS06230	0.19	-0.6
1,333,999	-		LRK54_RS06230	0.19	-0.6
1,333,999	-		LRK54_RS06230	0.19	-1.5
1,333,999	-		LRK54_RS06230	0.19	-1.1
1,334,049	+		LRK54_RS06230	0.22	+1.0
1,334,049	+		LRK54_RS06230	0.22	+2.0
1,334,049	+		LRK54_RS06230	0.22	-0.3
1,334,049	+		LRK54_RS06230	0.22	-0.3
1,334,049	+		LRK54_RS06230	0.22	+0.3
1,334,049	+		LRK54_RS06230	0.22	+0.4
1,334,049	+		LRK54_RS06230	0.22	+0.3
1,334,049	+		LRK54_RS06230	0.22	+0.0
1,334,049	+		LRK54_RS06230	0.22	-0.0
1,334,049	+		LRK54_RS06230	0.22	+1.0
1,334,049	+		LRK54_RS06230	0.22	-0.0
1,334,049	+		LRK54_RS06230	0.22	+1.9
1,334,049	+		LRK54_RS06230	0.22	+0.8
1,334,049	+		LRK54_RS06230	0.22	+0.5
1,334,049	+		LRK54_RS06230	0.22	+0.3
1,334,049	+		LRK54_RS06230	0.22	-0.7
1,334,049	+		LRK54_RS06230	0.22	-0.8
1,334,049	+		LRK54_RS06230	0.22	-0.6
1,334,049	+		LRK54_RS06230	0.22	-0.3
1,334,049	+		LRK54_RS06230	0.22	-0.4
1,334,049	+		LRK54_RS06230	0.22	-0.0
1,334,049	+		LRK54_RS06230	0.22	+1.2
1,334,049	+		LRK54_RS06230	0.22	-0.0
1,334,050	-		LRK54_RS06230	0.22	-0.5
1,334,050	-		LRK54_RS06230	0.22	+0.3
1,334,050	-		LRK54_RS06230	0.22	-0.3
1,334,050	-		LRK54_RS06230	0.22	+0.3
1,334,050	-		LRK54_RS06230	0.22	+0.3
1,334,050	-		LRK54_RS06230	0.22	-1.8
1,334,050	-		LRK54_RS06230	0.22	-0.1
1,334,050	-		LRK54_RS06230	0.22	-1.3
1,334,050	-		LRK54_RS06230	0.22	+1.3
1,334,050	-		LRK54_RS06230	0.22	-2.2
1,334,050	-		LRK54_RS06230	0.22	+0.8
1,334,050	-		LRK54_RS06230	0.22	+2.9
1,334,050	-		LRK54_RS06230	0.22	-1.8
1,334,050	-		LRK54_RS06230	0.22	-0.7
1,334,050	-		LRK54_RS06230	0.22	-0.5
1,334,050	-		LRK54_RS06230	0.22	-0.7
1,334,050	-		LRK54_RS06230	0.22	-0.4
1,334,050	-		LRK54_RS06230	0.22	+2.3
1,334,050	-		LRK54_RS06230	0.22	-0.4
1,334,050	-		LRK54_RS06230	0.22	+0.6
1,334,050	-		LRK54_RS06230	0.22	+0.7
1,334,050	-		LRK54_RS06230	0.22	+1.9
1,334,059	-		LRK54_RS06230	0.23	-0.1
1,334,059	-		LRK54_RS06230	0.23	-1.0
1,334,059	-		LRK54_RS06230	0.23	-0.6
1,334,214	+		LRK54_RS06230	0.32	+0.6
1,334,214	+		LRK54_RS06230	0.32	+2.1
1,334,214	+		LRK54_RS06230	0.32	-0.0
1,334,215	-		LRK54_RS06230	0.32	-0.7
1,334,298	+		LRK54_RS06230	0.37	+2.1
1,334,298	+		LRK54_RS06230	0.37	-0.0
1,334,298	+		LRK54_RS06230	0.37	+0.5
1,334,298	+		LRK54_RS06230	0.37	-2.0
1,334,298	+		LRK54_RS06230	0.37	-3.0
1,334,298	+		LRK54_RS06230	0.37	+0.1
1,334,298	+		LRK54_RS06230	0.37	-1.3
1,334,298	+		LRK54_RS06230	0.37	-0.5
1,334,298	+		LRK54_RS06230	0.37	+0.5
1,334,298	+		LRK54_RS06230	0.37	-0.9
1,334,298	+		LRK54_RS06230	0.37	-0.1
1,334,298	+		LRK54_RS06230	0.37	-0.1
1,334,299	-		LRK54_RS06230	0.37	-0.1
1,334,299	-		LRK54_RS06230	0.37	-0.0
1,334,299	-		LRK54_RS06230	0.37	-0.6
1,334,299	-		LRK54_RS06230	0.37	+0.2
1,334,299	-		LRK54_RS06230	0.37	-0.4
1,334,299	-		LRK54_RS06230	0.37	+0.2
1,334,299	-		LRK54_RS06230	0.37	-0.1
1,334,385	+		LRK54_RS06230	0.42	-0.7
1,334,385	+		LRK54_RS06230	0.42	+0.7
1,334,385	+		LRK54_RS06230	0.42	-1.3
1,334,385	+		LRK54_RS06230	0.42	+0.9
1,334,385	+		LRK54_RS06230	0.42	-0.0
1,334,385	+		LRK54_RS06230	0.42	+0.7
1,334,385	+		LRK54_RS06230	0.42	-2.0
1,334,385	+		LRK54_RS06230	0.42	-0.9
1,334,386	-		LRK54_RS06230	0.42	+0.9
1,334,386	-		LRK54_RS06230	0.42	-0.3
1,334,386	-		LRK54_RS06230	0.42	+1.3
1,334,386	-		LRK54_RS06230	0.42	+0.1
1,334,386	-		LRK54_RS06230	0.42	-0.0
1,334,386	-		LRK54_RS06230	0.42	-1.9
1,334,386	-		LRK54_RS06230	0.42	-0.3
1,334,386	-		LRK54_RS06230	0.42	+0.1
1,334,386	-		LRK54_RS06230	0.42	-0.5
1,334,386	-		LRK54_RS06230	0.42	-0.0
1,334,388	+		LRK54_RS06230	0.43	-0.4
1,334,388	+		LRK54_RS06230	0.43	+0.3
1,334,388	+		LRK54_RS06230	0.43	+0.7
1,334,388	+		LRK54_RS06230	0.43	-0.0
1,334,388	+		LRK54_RS06230	0.43	+1.0
1,334,388	+		LRK54_RS06230	0.43	-0.3
1,334,389	-		LRK54_RS06230	0.43	+1.5
1,334,389	-		LRK54_RS06230	0.43	+1.7
1,334,389	-		LRK54_RS06230	0.43	-0.5
1,334,389	-		LRK54_RS06230	0.43	-0.1