Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06150

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
1,321,485	+		LRK54_RS06145	0.35	+0.4
1,321,485	+		LRK54_RS06145	0.35	+0.1
1,321,485	+		LRK54_RS06145	0.35	-0.0
1,321,485	+		LRK54_RS06145	0.35	-0.0
1,321,485	+		LRK54_RS06145	0.35	-0.8
1,321,485	+		LRK54_RS06145	0.35	+0.3
1,321,485	+		LRK54_RS06145	0.35	+0.8
1,321,485	+		LRK54_RS06145	0.35	+0.1
1,321,485	+		LRK54_RS06145	0.35	-0.6
1,321,485	+		LRK54_RS06145	0.35	+1.7
1,321,485	+		LRK54_RS06145	0.35	+0.3
1,321,485	+		LRK54_RS06145	0.35	-0.5
1,321,485	+		LRK54_RS06145	0.35	-0.0
1,321,485	+		LRK54_RS06145	0.35	+1.7
1,321,485	+		LRK54_RS06145	0.35	+0.7
1,321,485	+		LRK54_RS06145	0.35	+1.5
1,321,486	-		LRK54_RS06145	0.35	+0.7
1,321,486	-		LRK54_RS06145	0.35	-0.2
1,321,486	-		LRK54_RS06145	0.35	-0.1
1,321,486	-		LRK54_RS06145	0.35	+0.6
1,321,486	-		LRK54_RS06145	0.35	+0.3
1,321,486	-		LRK54_RS06145	0.35	-0.3
1,321,486	-		LRK54_RS06145	0.35	-1.9
1,321,486	-		LRK54_RS06145	0.35	-0.4
1,321,486	-		LRK54_RS06145	0.35	-0.1
1,321,486	-		LRK54_RS06145	0.35	-0.5
1,321,486	-		LRK54_RS06145	0.35	-0.4
1,321,486	-		LRK54_RS06145	0.35	+0.6
1,321,486	-		LRK54_RS06145	0.35	-1.1
1,321,623	+		LRK54_RS06145	0.56	+1.7
1,321,623	+		LRK54_RS06145	0.56	+0.3
1,321,623	+		LRK54_RS06145	0.56	+1.8
1,321,623	+		LRK54_RS06145	0.56	+1.9
1,321,623	+		LRK54_RS06145	0.56	-0.1
1,321,623	+		LRK54_RS06145	0.56	-1.6
1,321,623	+		LRK54_RS06145	0.56	-2.3
1,321,623	+		LRK54_RS06145	0.56	+0.0
1,321,623	+		LRK54_RS06145	0.56	-0.7
1,321,623	+		LRK54_RS06145	0.56	-0.7
1,321,623	+		LRK54_RS06145	0.56	-0.9
1,321,623	+		LRK54_RS06145	0.56	+1.1
1,321,623	+		LRK54_RS06145	0.56	-0.1
1,321,623	+		LRK54_RS06145	0.56	+0.7
1,321,623	+		LRK54_RS06145	0.56	-0.1
1,321,623	+		LRK54_RS06145	0.56	+2.6
1,321,623	+		LRK54_RS06145	0.56	-0.1
1,321,623	+		LRK54_RS06145	0.56	+0.7
1,321,623	+		LRK54_RS06145	0.56	+0.3
1,321,623	+		LRK54_RS06145	0.56	-0.7
1,321,623	+		LRK54_RS06145	0.56	-0.6
1,321,623	+		LRK54_RS06145	0.56	-0.8
1,321,623	+		LRK54_RS06145	0.56	-0.3
1,321,623	+		LRK54_RS06145	0.56	-0.4
1,321,623	+		LRK54_RS06145	0.56	-1.0
1,321,623	+		LRK54_RS06145	0.56	-1.1
1,321,623	+		LRK54_RS06145	0.56	+0.5
1,321,623	+		LRK54_RS06145	0.56	-0.3
1,321,623	+		LRK54_RS06145	0.56	+0.1
1,321,623	+		LRK54_RS06145	0.56	-0.1
1,321,623	+		LRK54_RS06145	0.56	-0.3
1,321,623	+		LRK54_RS06145	0.56	+0.5
1,321,623	+		LRK54_RS06145	0.56	-0.8
1,321,623	+		LRK54_RS06145	0.56	-0.0
1,321,623	+		LRK54_RS06145	0.56	-0.0
1,321,623	+		LRK54_RS06145	0.56	-0.4
1,321,623	+		LRK54_RS06145	0.56	-0.0
1,321,623	+		LRK54_RS06145	0.56	+0.1
1,321,623	+		LRK54_RS06145	0.56	-0.2
1,321,623	+		LRK54_RS06145	0.56	+0.7
1,321,623	+		LRK54_RS06145	0.56	-0.0
1,321,624	-		LRK54_RS06145	0.56	-0.4
1,321,624	-		LRK54_RS06145	0.56	-0.8
1,321,624	-		LRK54_RS06145	0.56	-0.6
1,321,624	-		LRK54_RS06145	0.56	+0.3
1,321,624	-		LRK54_RS06145	0.56	+0.1
1,321,624	-		LRK54_RS06145	0.56	-0.2
1,321,624	-		LRK54_RS06145	0.56	+0.1
1,321,624	-		LRK54_RS06145	0.56	+0.3
1,321,624	-		LRK54_RS06145	0.56	-0.3
1,321,624	-		LRK54_RS06145	0.56	-0.3
1,321,624	-		LRK54_RS06145	0.56	-0.0
1,321,624	-		LRK54_RS06145	0.56	-0.7
1,321,624	-		LRK54_RS06145	0.56	-1.0
1,321,624	-		LRK54_RS06145	0.56	-0.3
1,321,624	-		LRK54_RS06145	0.56	-0.5
1,321,624	-		LRK54_RS06145	0.56	+0.6
1,321,624	-		LRK54_RS06145	0.56	-0.1
1,321,624	-		LRK54_RS06145	0.56	+0.6
1,321,624	-		LRK54_RS06145	0.56	+0.9
1,321,624	-		LRK54_RS06145	0.56	-0.3
1,321,624	-		LRK54_RS06145	0.56	-1.6
1,321,624	-		LRK54_RS06145	0.56	-0.6
1,321,624	-		LRK54_RS06145	0.56	+0.3
1,321,624	-		LRK54_RS06145	0.56	+0.4
1,321,624	-		LRK54_RS06145	0.56	+0.2
1,321,624	-		LRK54_RS06145	0.56	-0.0
1,321,644	+		LRK54_RS06145	0.59	+1.0
1,321,644	+		LRK54_RS06145	0.59	-1.7
1,321,644	+		LRK54_RS06145	0.59	+0.4
1,321,644	+		LRK54_RS06145	0.59	+0.9
1,321,644	+		LRK54_RS06145	0.59	+1.1
1,321,644	+		LRK54_RS06145	0.59	-0.2
1,321,644	+		LRK54_RS06145	0.59	-0.5
1,321,644	+		LRK54_RS06145	0.59	-0.0
1,321,644	+		LRK54_RS06145	0.59	+0.5
1,321,644	+		LRK54_RS06145	0.59	-0.5
1,321,644	+		LRK54_RS06145	0.59	+0.1
1,321,644	+		LRK54_RS06145	0.59	-0.6
1,321,644	+		LRK54_RS06145	0.59	-1.1
1,321,644	+		LRK54_RS06145	0.59	+0.9
1,321,644	+		LRK54_RS06145	0.59	+3.3
1,321,644	+		LRK54_RS06145	0.59	+1.3
1,321,644	+		LRK54_RS06145	0.59	-1.1
1,321,644	+		LRK54_RS06145	0.59	-0.1
1,321,644	+		LRK54_RS06145	0.59	+0.6
1,321,644	+		LRK54_RS06145	0.59	+0.9
1,321,644	+		LRK54_RS06145	0.59	-0.0
1,321,644	+		LRK54_RS06145	0.59	-0.5
1,321,644	+		LRK54_RS06145	0.59	+1.4
1,321,644	+		LRK54_RS06145	0.59	-0.5
1,321,645	-		LRK54_RS06145	0.59	-1.4
1,321,645	-		LRK54_RS06145	0.59	+0.7
1,321,645	-		LRK54_RS06145	0.59	-0.2
1,321,645	-		LRK54_RS06145	0.59	+0.5
1,321,645	-		LRK54_RS06145	0.59	+0.3
1,321,645	-		LRK54_RS06145	0.59	+0.1
1,321,645	-		LRK54_RS06145	0.59	+0.4
1,321,645	-		LRK54_RS06145	0.59	-0.5
1,321,645	-		LRK54_RS06145	0.59	-0.8
1,321,645	-		LRK54_RS06145	0.59	-0.0
1,321,645	-		LRK54_RS06145	0.59	-0.9
1,321,645	-		LRK54_RS06145	0.59	-1.0
1,321,645	-		LRK54_RS06145	0.59	+1.7
1,321,645	-		LRK54_RS06145	0.59	+0.4
1,321,645	-		LRK54_RS06145	0.59	-0.4
1,321,645	-		LRK54_RS06145	0.59	-0.9
1,321,645	-		LRK54_RS06145	0.59	-0.7
1,321,645	-		LRK54_RS06145	0.59	+1.9
1,321,645	-		LRK54_RS06145	0.59	-0.3
1,321,645	-		LRK54_RS06145	0.59	+0.3
1,321,645	-		LRK54_RS06145	0.59	-1.1
1,321,645	-		LRK54_RS06145	0.59	-1.1
1,321,645	-		LRK54_RS06145	0.59	-2.2
1,321,645	-		LRK54_RS06145	0.59	-1.5
1,321,645	-		LRK54_RS06145	0.59	-0.6
1,321,707	+		LRK54_RS06145	0.68	-1.9
1,321,707	+		LRK54_RS06145	0.68	+0.2
1,321,707	+		LRK54_RS06145	0.68	-0.0
1,321,707	+		LRK54_RS06145	0.68	-0.6
1,321,708	-		LRK54_RS06145	0.68	+0.5
1,321,708	-		LRK54_RS06145	0.68	+0.3
1,321,708	-		LRK54_RS06145	0.68	+0.3
1,321,708	-		LRK54_RS06145	0.68	-0.0
1,321,708	-		LRK54_RS06145	0.68	+0.6
1,321,708	-		LRK54_RS06145	0.68	-0.6
1,321,725	+		LRK54_RS06145	0.71	-0.8
1,321,725	+		LRK54_RS06145	0.71	+0.2
1,321,725	+		LRK54_RS06145	0.71	+0.8
1,321,725	+		LRK54_RS06145	0.71	-0.5
1,321,725	+		LRK54_RS06145	0.71	+0.1
1,321,725	+		LRK54_RS06145	0.71	+0.1
1,321,725	+		LRK54_RS06145	0.71	-0.5
1,321,725	+		LRK54_RS06145	0.71	+1.0
1,321,725	+		LRK54_RS06145	0.71	+0.3
1,321,726	-		LRK54_RS06145	0.71	-0.5
1,321,726	-		LRK54_RS06145	0.71	-1.6
1,321,726	-		LRK54_RS06145	0.71	+0.1
1,321,726	-		LRK54_RS06145	0.71	-0.5
1,321,726	-		LRK54_RS06145	0.71	-0.3
1,321,884	+				-0.8
1,321,884	+				-0.0
1,321,885	-				+2.3
1,321,953	+				-0.6
1,321,953	+				-0.1
1,321,953	+				+0.5
1,321,953	+				+0.3
1,321,953	+				+0.3
1,321,953	+				-0.3
1,321,953	+				+0.6
1,321,953	+				+1.0
1,321,953	+				-0.8
1,321,953	+				-0.2
1,321,953	+				+0.3
1,321,953	+				-0.8
1,321,953	+				-0.1
1,321,953	+				+0.1
1,321,953	+				-0.5
1,321,953	+				-0.1
1,321,954	-				-0.7
1,321,954	-				-0.3
1,321,954	-				+1.1
1,321,954	-				+0.6
1,321,954	-				+0.2
1,321,954	-				+0.3
1,321,954	-				+0.6
1,321,954	-				-0.1
1,321,954	-				+0.3
1,321,954	-				+0.2
1,321,954	-				+0.4
1,321,954	-				-0.5
1,321,954	-				+0.1
1,321,983	-				-0.3
1,322,007	-				-0.5
1,322,019	+				-0.4
1,322,019	+				+1.5
1,322,020	-				+0.5
1,322,362	+				+1.1
1,322,362	+				-0.9
1,322,362	+				-1.7
1,322,362	+				+0.7
1,322,362	+				-0.9
1,322,362	+				-0.4
1,322,362	+				+0.6
1,322,362	+				+1.1
1,322,362	+				+0.3
1,322,362	+				+0.7
1,322,362	+				+1.1
1,322,362	+				+1.5
1,322,363	-				-2.0
1,322,363	-				-0.7
1,322,363	-				+0.0
1,322,363	-				-1.0
1,322,363	-				-0.2
1,322,363	-				+0.5
1,322,465	+				-0.9
1,322,465	+				-0.3
1,322,465	+				-0.1
1,322,466	-				-0.6
1,322,466	-				-1.7
1,322,466	-				-0.3
1,322,476	-				-0.4
1,322,476	-				+0.3
1,322,476	-				-0.9
1,322,476	-				-1.0
1,322,792	+		LRK54_RS06150	0.52	-0.9
1,322,792	+		LRK54_RS06150	0.52	+0.4
1,322,792	+		LRK54_RS06150	0.52	+0.4
1,322,792	+		LRK54_RS06150	0.52	+2.0
1,322,792	+		LRK54_RS06150	0.52	-0.3
1,322,792	+		LRK54_RS06150	0.52	+1.5
1,322,792	+		LRK54_RS06150	0.52	-0.2
1,322,793	-		LRK54_RS06150	0.53	+1.7
1,322,802	+		LRK54_RS06150	0.54	+0.3
1,322,803	-		LRK54_RS06150	0.54	+0.4
1,322,980	+		LRK54_RS06150	0.81	-0.0
1,322,981	-		LRK54_RS06150	0.81	-0.5
1,322,981	-		LRK54_RS06150	0.81	+0.5
1,322,981	-		LRK54_RS06150	0.81	-0.1
1,322,997	+		LRK54_RS06150	0.83	+0.8
1,322,997	+		LRK54_RS06150	0.83	-1.6
1,322,998	-		LRK54_RS06150	0.83	-0.6
1,322,998	-		LRK54_RS06150	0.83	-0.2
1,323,106	+				+0.7
1,323,107	-				+0.9
1,323,190	+				-1.1
1,323,190	+				+0.6
1,323,190	+				-1.4
1,323,190	+				-0.2
1,323,190	+				-0.3
1,323,190	+				+0.6
1,323,190	+				-0.7
1,323,191	-				+0.3
1,323,191	-				+0.7
1,323,191	-				-1.0
1,323,191	-				+0.7
1,323,191	-				-1.1
1,323,191	-				+0.1
1,323,191	-				+0.7
1,323,206	+				+1.2
1,323,206	+				-0.5
1,323,206	+				+2.1
1,323,206	+				-0.1
1,323,206	+				+0.3
1,323,206	+				-0.4
1,323,206	+				+0.7
1,323,206	+				+1.0
1,323,206	+				+0.2
1,323,206	+				-0.7
1,323,207	-				+0.1
1,323,207	-				-0.2
1,323,207	-				+0.0
1,323,207	-				+0.2
1,323,207	-				+0.6
1,323,207	-				+0.9
1,323,207	-				-2.5
1,323,207	-				+2.4
1,323,207	-				+0.4
1,323,207	-				-0.2
1,323,207	-				+0.4
1,323,207	-				-0.3
1,323,207	-				-0.6
1,323,207	-				+3.3
1,323,207	-				+0.1
1,323,474	+		LRK54_RS06155	0.39	-1.5
1,323,474	+		LRK54_RS06155	0.39	-0.5
1,323,573	-		LRK54_RS06155	0.56	+0.9
1,323,999	+		LRK54_RS06160	0.10	-1.5
1,324,000	-		LRK54_RS06160	0.10	+0.0