Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05985

Experiment: R2A with FW104 filtrate 0.5 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS05980 and LRK54_RS05985 overlap by 35 nucleotidesLRK54_RS05985 and LRK54_RS05990 are separated by 1 nucleotidesLRK54_RS05990 and LRK54_RS05995 are separated by 82 nucleotides LRK54_RS05980: LRK54_RS05980 - ATP-binding protein, at 1,286,081 to 1,287,502 _RS05980 LRK54_RS05985: LRK54_RS05985 - response regulator transcription factor, at 1,287,468 to 1,288,160 _RS05985 LRK54_RS05990: LRK54_RS05990 - hypothetical protein, at 1,288,162 to 1,288,485 _RS05990 LRK54_RS05995: LRK54_RS05995 - tRNA dihydrouridine(20/20a) synthase DusA, at 1,288,568 to 1,289,554 _RS05995 Position (kb) 1287 1288 1289Strain fitness (log2 ratio) -2 -1 0 1 2at 1286.478 kb on + strand, within LRK54_RS05980at 1286.478 kb on + strand, within LRK54_RS05980at 1286.478 kb on + strand, within LRK54_RS05980at 1286.479 kb on - strand, within LRK54_RS05980at 1286.479 kb on - strand, within LRK54_RS05980at 1286.722 kb on + strand, within LRK54_RS05980at 1286.722 kb on + strand, within LRK54_RS05980at 1286.953 kb on + strand, within LRK54_RS05980at 1286.954 kb on - strand, within LRK54_RS05980at 1287.058 kb on - strand, within LRK54_RS05980at 1287.058 kb on - strand, within LRK54_RS05980at 1287.063 kb on + strand, within LRK54_RS05980at 1287.063 kb on + strand, within LRK54_RS05980at 1287.063 kb on + strand, within LRK54_RS05980at 1287.063 kb on + strand, within LRK54_RS05980at 1287.064 kb on - strand, within LRK54_RS05980at 1287.066 kb on + strand, within LRK54_RS05980at 1287.066 kb on + strand, within LRK54_RS05980at 1287.067 kb on - strand, within LRK54_RS05980at 1287.067 kb on - strand, within LRK54_RS05980at 1287.069 kb on + strand, within LRK54_RS05980at 1287.069 kb on + strand, within LRK54_RS05980at 1287.070 kb on - strand, within LRK54_RS05980at 1287.181 kb on - strand, within LRK54_RS05980at 1287.181 kb on - strand, within LRK54_RS05980at 1287.208 kb on - strand, within LRK54_RS05980at 1287.289 kb on + strand, within LRK54_RS05980at 1287.290 kb on - strand, within LRK54_RS05980at 1287.300 kb on + strand, within LRK54_RS05980at 1287.300 kb on + strand, within LRK54_RS05980at 1287.300 kb on + strand, within LRK54_RS05980at 1287.300 kb on + strand, within LRK54_RS05980at 1287.300 kb on + strand, within LRK54_RS05980at 1287.301 kb on - strand, within LRK54_RS05980at 1287.301 kb on - strand, within LRK54_RS05980at 1287.301 kb on - strand, within LRK54_RS05980at 1287.625 kb on + strand, within LRK54_RS05985at 1287.625 kb on + strand, within LRK54_RS05985at 1287.625 kb on + strand, within LRK54_RS05985at 1287.625 kb on + strand, within LRK54_RS05985at 1287.625 kb on + strand, within LRK54_RS05985at 1287.625 kb on + strand, within LRK54_RS05985at 1287.625 kb on + strand, within LRK54_RS05985at 1287.625 kb on + strand, within LRK54_RS05985at 1287.626 kb on - strand, within LRK54_RS05985at 1287.626 kb on - strand, within LRK54_RS05985at 1287.626 kb on - strand, within LRK54_RS05985at 1287.682 kb on + strand, within LRK54_RS05985at 1287.683 kb on - strand, within LRK54_RS05985at 1287.697 kb on + strand, within LRK54_RS05985at 1287.697 kb on + strand, within LRK54_RS05985at 1287.697 kb on + strand, within LRK54_RS05985at 1287.703 kb on + strand, within LRK54_RS05985at 1287.869 kb on - strand, within LRK54_RS05985at 1288.048 kb on + strand, within LRK54_RS05985at 1288.048 kb on + strand, within LRK54_RS05985at 1288.049 kb on - strand, within LRK54_RS05985at 1288.049 kb on - strand, within LRK54_RS05985at 1288.160 kb on + strandat 1288.161 kb on - strandat 1288.161 kb on - strandat 1288.298 kb on + strand, within LRK54_RS05990at 1288.298 kb on + strand, within LRK54_RS05990at 1288.298 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.372 kb on + strand, within LRK54_RS05990at 1288.372 kb on + strand, within LRK54_RS05990at 1288.447 kb on + strand, within LRK54_RS05990at 1288.447 kb on + strand, within LRK54_RS05990at 1288.447 kb on + strand, within LRK54_RS05990at 1288.447 kb on + strand, within LRK54_RS05990at 1288.447 kb on + strand, within LRK54_RS05990at 1288.447 kb on + strand, within LRK54_RS05990at 1288.447 kb on + strand, within LRK54_RS05990at 1288.447 kb on + strand, within LRK54_RS05990at 1288.447 kb on + strand, within LRK54_RS05990at 1288.448 kb on - strand, within LRK54_RS05990at 1288.526 kb on + strandat 1288.526 kb on + strandat 1288.526 kb on + strandat 1288.526 kb on + strandat 1288.526 kb on + strandat 1288.527 kb on - strandat 1288.527 kb on - strandat 1288.527 kb on - strandat 1288.527 kb on - strandat 1288.527 kb on - strandat 1288.544 kb on + strandat 1288.544 kb on + strandat 1288.544 kb on + strandat 1288.544 kb on + strandat 1288.545 kb on - strandat 1288.545 kb on - strandat 1288.545 kb on - strandat 1288.545 kb on - strandat 1288.686 kb on + strand, within LRK54_RS05995at 1288.686 kb on + strand, within LRK54_RS05995at 1288.686 kb on + strand, within LRK54_RS05995at 1288.687 kb on - strand, within LRK54_RS05995at 1288.687 kb on - strand, within LRK54_RS05995at 1288.687 kb on - strand, within LRK54_RS05995at 1288.687 kb on - strand, within LRK54_RS05995at 1288.687 kb on - strand, within LRK54_RS05995at 1288.687 kb on - strand, within LRK54_RS05995at 1288.687 kb on - strand, within LRK54_RS05995at 1288.687 kb on - strand, within LRK54_RS05995at 1288.752 kb on + strand, within LRK54_RS05995at 1288.752 kb on + strand, within LRK54_RS05995at 1288.753 kb on - strand, within LRK54_RS05995at 1288.753 kb on - strand, within LRK54_RS05995at 1288.753 kb on - strand, within LRK54_RS05995at 1288.753 kb on - strand, within LRK54_RS05995at 1288.753 kb on - strand, within LRK54_RS05995at 1288.753 kb on - strand, within LRK54_RS05995at 1288.833 kb on + strand, within LRK54_RS05995at 1288.834 kb on - strand, within LRK54_RS05995at 1288.834 kb on - strand, within LRK54_RS05995at 1288.845 kb on + strand, within LRK54_RS05995at 1288.846 kb on - strand, within LRK54_RS05995at 1288.846 kb on - strand, within LRK54_RS05995at 1288.916 kb on - strand, within LRK54_RS05995at 1288.934 kb on + strand, within LRK54_RS05995at 1288.934 kb on + strand, within LRK54_RS05995at 1288.934 kb on + strand, within LRK54_RS05995at 1288.934 kb on + strand, within LRK54_RS05995at 1288.934 kb on + strand, within LRK54_RS05995at 1288.935 kb on - strand, within LRK54_RS05995at 1288.965 kb on + strand, within LRK54_RS05995at 1288.965 kb on + strand, within LRK54_RS05995at 1288.977 kb on + strand, within LRK54_RS05995at 1288.977 kb on + strand, within LRK54_RS05995at 1288.977 kb on + strand, within LRK54_RS05995at 1288.977 kb on + strand, within LRK54_RS05995at 1288.977 kb on + strand, within LRK54_RS05995at 1288.977 kb on + strand, within LRK54_RS05995at 1288.977 kb on + strand, within LRK54_RS05995at 1288.977 kb on + strand, within LRK54_RS05995at 1288.978 kb on - strand, within LRK54_RS05995at 1288.978 kb on - strand, within LRK54_RS05995at 1288.978 kb on - strand, within LRK54_RS05995at 1288.978 kb on - strand, within LRK54_RS05995at 1288.978 kb on - strand, within LRK54_RS05995at 1288.978 kb on - strand, within LRK54_RS05995at 1289.106 kb on + strand, within LRK54_RS05995at 1289.106 kb on + strand, within LRK54_RS05995at 1289.159 kb on + strand, within LRK54_RS05995at 1289.160 kb on - strand, within LRK54_RS05995at 1289.160 kb on - strand, within LRK54_RS05995at 1289.160 kb on - strand, within LRK54_RS05995

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X
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1,286,478 + LRK54_RS05980 0.28 -0.7
1,286,478 + LRK54_RS05980 0.28 -0.9
1,286,478 + LRK54_RS05980 0.28 -1.0
1,286,479 - LRK54_RS05980 0.28 -0.9
1,286,479 - LRK54_RS05980 0.28 -0.5
1,286,722 + LRK54_RS05980 0.45 -1.0
1,286,722 + LRK54_RS05980 0.45 +0.7
1,286,953 + LRK54_RS05980 0.61 +2.3
1,286,954 - LRK54_RS05980 0.61 -0.3
1,287,058 - LRK54_RS05980 0.69 -0.7
1,287,058 - LRK54_RS05980 0.69 -1.3
1,287,063 + LRK54_RS05980 0.69 +0.3
1,287,063 + LRK54_RS05980 0.69 -0.5
1,287,063 + LRK54_RS05980 0.69 +0.7
1,287,063 + LRK54_RS05980 0.69 -1.3
1,287,064 - LRK54_RS05980 0.69 -0.5
1,287,066 + LRK54_RS05980 0.69 -0.0
1,287,066 + LRK54_RS05980 0.69 -0.9
1,287,067 - LRK54_RS05980 0.69 -0.7
1,287,067 - LRK54_RS05980 0.69 -0.3
1,287,069 + LRK54_RS05980 0.69 -1.4
1,287,069 + LRK54_RS05980 0.69 -0.9
1,287,070 - LRK54_RS05980 0.70 +0.3
1,287,181 - LRK54_RS05980 0.77 +1.3
1,287,181 - LRK54_RS05980 0.77 -0.0
1,287,208 - LRK54_RS05980 0.79 -0.9
1,287,289 + LRK54_RS05980 0.85 -0.5
1,287,290 - LRK54_RS05980 0.85 -0.3
1,287,300 + LRK54_RS05980 0.86 -0.0
1,287,300 + LRK54_RS05980 0.86 -0.3
1,287,300 + LRK54_RS05980 0.86 -0.9
1,287,300 + LRK54_RS05980 0.86 -0.0
1,287,300 + LRK54_RS05980 0.86 -0.3
1,287,301 - LRK54_RS05980 0.86 -0.0
1,287,301 - LRK54_RS05980 0.86 +0.3
1,287,301 - LRK54_RS05980 0.86 +0.3
1,287,625 + LRK54_RS05985 0.23 -0.9
1,287,625 + LRK54_RS05985 0.23 -0.7
1,287,625 + LRK54_RS05985 0.23 -0.0
1,287,625 + LRK54_RS05985 0.23 -0.7
1,287,625 + LRK54_RS05985 0.23 -0.3
1,287,625 + LRK54_RS05985 0.23 -0.3
1,287,625 + LRK54_RS05985 0.23 -0.0
1,287,625 + LRK54_RS05985 0.23 -0.5
1,287,626 - LRK54_RS05985 0.23 -0.7
1,287,626 - LRK54_RS05985 0.23 -0.5
1,287,626 - LRK54_RS05985 0.23 -1.0
1,287,682 + LRK54_RS05985 0.31 -0.0
1,287,683 - LRK54_RS05985 0.31 -0.3
1,287,697 + LRK54_RS05985 0.33 -0.0
1,287,697 + LRK54_RS05985 0.33 -1.0
1,287,697 + LRK54_RS05985 0.33 -0.3
1,287,703 + LRK54_RS05985 0.34 -0.5
1,287,869 - LRK54_RS05985 0.58 -0.7
1,288,048 + LRK54_RS05985 0.84 -0.3
1,288,048 + LRK54_RS05985 0.84 -0.3
1,288,049 - LRK54_RS05985 0.84 -0.0
1,288,049 - LRK54_RS05985 0.84 -1.0
1,288,160 + -1.1
1,288,161 - -1.7
1,288,161 - -0.3
1,288,298 + LRK54_RS05990 0.42 -1.0
1,288,298 + LRK54_RS05990 0.42 -0.6
1,288,298 + LRK54_RS05990 0.42 -1.0
1,288,339 + LRK54_RS05990 0.55 +0.3
1,288,339 + LRK54_RS05990 0.55 -2.3
1,288,339 + LRK54_RS05990 0.55 -0.8
1,288,339 + LRK54_RS05990 0.55 +0.4
1,288,339 + LRK54_RS05990 0.55 +0.1
1,288,339 + LRK54_RS05990 0.55 -1.6
1,288,339 + LRK54_RS05990 0.55 -0.3
1,288,339 + LRK54_RS05990 0.55 +0.3
1,288,339 + LRK54_RS05990 0.55 +0.7
1,288,339 + LRK54_RS05990 0.55 -0.2
1,288,339 + LRK54_RS05990 0.55 -0.2
1,288,339 + LRK54_RS05990 0.55 -0.0
1,288,339 + LRK54_RS05990 0.55 -0.5
1,288,339 + LRK54_RS05990 0.55 -0.3
1,288,372 + LRK54_RS05990 0.65 +1.4
1,288,372 + LRK54_RS05990 0.65 -1.1
1,288,447 + LRK54_RS05990 0.88 -0.2
1,288,447 + LRK54_RS05990 0.88 -1.1
1,288,447 + LRK54_RS05990 0.88 +0.6
1,288,447 + LRK54_RS05990 0.88 -2.0
1,288,447 + LRK54_RS05990 0.88 -1.2
1,288,447 + LRK54_RS05990 0.88 -0.9
1,288,447 + LRK54_RS05990 0.88 -0.4
1,288,447 + LRK54_RS05990 0.88 -1.9
1,288,447 + LRK54_RS05990 0.88 -1.8
1,288,448 - LRK54_RS05990 0.88 -0.3
1,288,526 + -0.6
1,288,526 + +0.7
1,288,526 + +0.2
1,288,526 + +0.7
1,288,526 + -0.9
1,288,527 - +0.6
1,288,527 - -0.2
1,288,527 - +0.4
1,288,527 - -0.0
1,288,527 - +0.1
1,288,544 + +0.5
1,288,544 + -0.6
1,288,544 + +1.6
1,288,544 + +0.2
1,288,545 - +0.3
1,288,545 - -1.1
1,288,545 - -0.9
1,288,545 - -0.2
1,288,686 + LRK54_RS05995 0.12 -0.6
1,288,686 + LRK54_RS05995 0.12 -0.6
1,288,686 + LRK54_RS05995 0.12 +0.1
1,288,687 - LRK54_RS05995 0.12 -0.7
1,288,687 - LRK54_RS05995 0.12 +0.3
1,288,687 - LRK54_RS05995 0.12 +0.2
1,288,687 - LRK54_RS05995 0.12 +0.3
1,288,687 - LRK54_RS05995 0.12 -1.0
1,288,687 - LRK54_RS05995 0.12 -0.3
1,288,687 - LRK54_RS05995 0.12 -0.6
1,288,687 - LRK54_RS05995 0.12 +2.3
1,288,752 + LRK54_RS05995 0.19 +0.7
1,288,752 + LRK54_RS05995 0.19 +0.8
1,288,753 - LRK54_RS05995 0.19 +0.9
1,288,753 - LRK54_RS05995 0.19 -0.3
1,288,753 - LRK54_RS05995 0.19 -1.9
1,288,753 - LRK54_RS05995 0.19 -1.0
1,288,753 - LRK54_RS05995 0.19 -1.0
1,288,753 - LRK54_RS05995 0.19 +0.5
1,288,833 + LRK54_RS05995 0.27 +1.3
1,288,834 - LRK54_RS05995 0.27 +1.1
1,288,834 - LRK54_RS05995 0.27 +0.7
1,288,845 + LRK54_RS05995 0.28 +0.5
1,288,846 - LRK54_RS05995 0.28 -1.1
1,288,846 - LRK54_RS05995 0.28 -0.3
1,288,916 - LRK54_RS05995 0.35 +1.0
1,288,934 + LRK54_RS05995 0.37 +1.1
1,288,934 + LRK54_RS05995 0.37 +0.4
1,288,934 + LRK54_RS05995 0.37 +0.4
1,288,934 + LRK54_RS05995 0.37 +0.9
1,288,934 + LRK54_RS05995 0.37 +0.1
1,288,935 - LRK54_RS05995 0.37 +0.1
1,288,965 + LRK54_RS05995 0.40 -0.5
1,288,965 + LRK54_RS05995 0.40 +0.5
1,288,977 + LRK54_RS05995 0.41 -0.0
1,288,977 + LRK54_RS05995 0.41 -1.1
1,288,977 + LRK54_RS05995 0.41 -0.4
1,288,977 + LRK54_RS05995 0.41 -0.5
1,288,977 + LRK54_RS05995 0.41 +0.5
1,288,977 + LRK54_RS05995 0.41 +0.2
1,288,977 + LRK54_RS05995 0.41 -0.9
1,288,977 + LRK54_RS05995 0.41 +0.9
1,288,978 - LRK54_RS05995 0.42 -0.2
1,288,978 - LRK54_RS05995 0.42 +0.8
1,288,978 - LRK54_RS05995 0.42 +2.1
1,288,978 - LRK54_RS05995 0.42 +0.9
1,288,978 - LRK54_RS05995 0.42 -0.5
1,288,978 - LRK54_RS05995 0.42 +0.8
1,289,106 + LRK54_RS05995 0.55 +0.9
1,289,106 + LRK54_RS05995 0.55 +0.5
1,289,159 + LRK54_RS05995 0.60 -1.6
1,289,160 - LRK54_RS05995 0.60 -0.3
1,289,160 - LRK54_RS05995 0.60 -0.5
1,289,160 - LRK54_RS05995 0.60 -0.2

Or see this region's nucleotide sequence