Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05695

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
1,230,910	+		LRK54_RS05690	0.76	-0.8
1,230,910	+		LRK54_RS05690	0.76	+0.4
1,230,910	+		LRK54_RS05690	0.76	+0.9
1,230,910	+		LRK54_RS05690	0.76	-0.5
1,230,910	+		LRK54_RS05690	0.76	-0.1
1,230,910	+		LRK54_RS05690	0.76	+1.3
1,230,910	+		LRK54_RS05690	0.76	+0.6
1,230,910	+		LRK54_RS05690	0.76	+0.2
1,230,910	+		LRK54_RS05690	0.76	+1.3
1,230,910	+		LRK54_RS05690	0.76	+1.0
1,230,910	+		LRK54_RS05690	0.76	+0.4
1,230,911	-		LRK54_RS05690	0.76	+0.6
1,230,911	-		LRK54_RS05690	0.76	-0.3
1,230,911	-		LRK54_RS05690	0.76	+0.4
1,230,911	-		LRK54_RS05690	0.76	+0.4
1,230,911	-		LRK54_RS05690	0.76	+0.1
1,230,911	-		LRK54_RS05690	0.76	+0.3
1,230,911	-		LRK54_RS05690	0.76	-1.3
1,231,027	+		LRK54_RS05690	0.81	-0.3
1,231,027	+		LRK54_RS05690	0.81	+0.3
1,231,028	-		LRK54_RS05690	0.81	-0.2
1,231,028	-		LRK54_RS05690	0.81	-0.3
1,231,028	-		LRK54_RS05690	0.81	+1.3
1,231,028	-		LRK54_RS05690	0.81	+1.1
1,231,153	+		LRK54_RS05690	0.86	+0.5
1,231,153	+		LRK54_RS05690	0.86	-1.8
1,231,153	+		LRK54_RS05690	0.86	-0.8
1,231,153	+		LRK54_RS05690	0.86	-0.1
1,231,154	-		LRK54_RS05690	0.86	+0.9
1,231,154	-		LRK54_RS05690	0.86	+1.7
1,231,154	-		LRK54_RS05690	0.86	+1.4
1,231,154	-		LRK54_RS05690	0.86	+0.2
1,231,154	-		LRK54_RS05690	0.86	-1.3
1,231,154	-		LRK54_RS05690	0.86	-1.2
1,231,154	-		LRK54_RS05690	0.86	-0.5
1,231,154	-		LRK54_RS05690	0.86	+0.2
1,231,171	+		LRK54_RS05690	0.87	-1.2
1,231,171	+		LRK54_RS05690	0.87	-1.1
1,231,171	+		LRK54_RS05690	0.87	-0.8
1,231,171	+		LRK54_RS05690	0.87	-0.5
1,231,171	+		LRK54_RS05690	0.87	+0.3
1,231,171	+		LRK54_RS05690	0.87	-0.2
1,231,171	+		LRK54_RS05690	0.87	+0.4
1,231,171	+		LRK54_RS05690	0.87	+1.3
1,231,171	+		LRK54_RS05690	0.87	+1.0
1,231,171	+		LRK54_RS05690	0.87	+0.5
1,231,171	+		LRK54_RS05690	0.87	+1.3
1,231,171	+		LRK54_RS05690	0.87	+0.4
1,231,171	+		LRK54_RS05690	0.87	+0.4
1,231,171	+		LRK54_RS05690	0.87	+0.1
1,231,171	+		LRK54_RS05690	0.87	-0.4
1,231,171	+		LRK54_RS05690	0.87	-0.5
1,231,172	-		LRK54_RS05690	0.87	+0.6
1,231,172	-		LRK54_RS05690	0.87	+0.2
1,231,172	-		LRK54_RS05690	0.87	-0.7
1,231,172	-		LRK54_RS05690	0.87	+0.5
1,231,172	-		LRK54_RS05690	0.87	+0.7
1,231,172	-		LRK54_RS05690	0.87	-0.1
1,231,172	-		LRK54_RS05690	0.87	-0.2
1,231,172	-		LRK54_RS05690	0.87	+0.7
1,231,172	-		LRK54_RS05690	0.87	-1.3
1,231,172	-		LRK54_RS05690	0.87	+0.8
1,231,172	-		LRK54_RS05690	0.87	+0.2
1,231,172	-		LRK54_RS05690	0.87	-0.1
1,231,172	-		LRK54_RS05690	0.87	+2.0
1,231,172	-		LRK54_RS05690	0.87	-0.4
1,231,172	-		LRK54_RS05690	0.87	+0.2
1,231,172	-		LRK54_RS05690	0.87	-0.6
1,231,349	+				-0.2
1,231,349	+				-0.9
1,231,349	+				-0.1
1,231,349	+				+0.4
1,231,349	+				-0.0
1,231,349	+				-1.2
1,231,349	+				-2.7
1,231,349	+				-1.0
1,231,349	+				+1.6
1,231,349	+				+0.0
1,231,350	-				-2.0
1,231,350	-				+0.7
1,231,350	-				-0.2
1,231,350	-				-0.2
1,231,350	-				-2.4
1,231,350	-				-0.6
1,231,350	-				-0.2
1,231,350	-				+0.7
1,231,350	-				+0.8
1,231,350	-				+0.8
1,231,350	-				-0.2
1,231,350	-				-0.7
1,231,350	-				-0.5
1,231,350	-				-0.2
1,231,350	-				-1.9
1,231,350	-				-0.7
1,231,441	+				-0.6
1,231,441	+				-0.1
1,231,441	+				+0.1
1,231,441	+				-1.2
1,231,441	+				-0.0
1,231,441	+				-0.8
1,231,441	+				+0.3
1,231,441	+				-0.5
1,231,441	+				+0.2
1,231,441	+				-0.0
1,231,441	+				-1.8
1,231,441	+				-0.5
1,231,441	+				-0.1
1,231,441	+				-0.5
1,231,441	+				+0.3
1,231,441	+				-1.0
1,231,441	+				-0.4
1,231,441	+				+0.3
1,231,441	+				+0.3
1,231,442	-				+0.9
1,231,442	-				+0.3
1,231,442	-				-1.6
1,231,442	-				-1.3
1,231,442	-				+0.6
1,231,442	-				+0.4
1,231,442	-				+0.6
1,231,442	-				+1.4
1,231,442	-				-2.2
1,231,442	-				-0.1
1,231,442	-				-0.9
1,231,442	-				+0.3
1,231,442	-				-0.6
1,231,442	-				-0.2
1,231,442	-				-0.6
1,231,442	-				-0.3
1,231,442	-				-0.5
1,231,442	-				-0.0
1,231,442	-				+1.1
1,231,442	-				-0.3
1,231,442	-				+0.4
1,231,442	-				+0.3
1,231,442	-				+0.0
1,231,442	-				-0.3
1,231,565	+				+0.9
1,231,566	-				-0.0
1,231,566	-				-1.3
1,231,566	-				-0.2
1,231,770	+		LRK54_RS05695	0.46	-0.1
1,231,770	+		LRK54_RS05695	0.46	+0.7
1,231,770	+		LRK54_RS05695	0.46	+1.3
1,231,770	+		LRK54_RS05695	0.46	-1.5
1,231,771	-		LRK54_RS05695	0.47	+2.0
1,231,771	-		LRK54_RS05695	0.47	-0.9
1,231,771	-		LRK54_RS05695	0.47	+0.4
1,231,771	-		LRK54_RS05695	0.47	+0.7
1,231,771	-		LRK54_RS05695	0.47	+0.0
1,231,771	-		LRK54_RS05695	0.47	-0.2
1,231,771	-		LRK54_RS05695	0.47	+0.3
1,231,771	-		LRK54_RS05695	0.47	-2.3
1,232,007	+				+0.1
1,232,008	-				-0.0
1,232,040	+				+0.4
1,232,040	+				-0.8
1,232,040	+				-0.2
1,232,040	+				-0.5
1,232,041	-				+0.5
1,232,141	+		LRK54_RS05700	0.11	+0.2
1,232,141	+		LRK54_RS05700	0.11	-0.4
1,232,141	+		LRK54_RS05700	0.11	-0.6
1,232,141	+		LRK54_RS05700	0.11	-0.5
1,232,142	-		LRK54_RS05700	0.11	-0.7
1,232,142	-		LRK54_RS05700	0.11	-0.0
1,232,142	-		LRK54_RS05700	0.11	+0.3
1,232,142	-		LRK54_RS05700	0.11	-0.4
1,232,142	-		LRK54_RS05700	0.11	+0.5
1,232,142	-		LRK54_RS05700	0.11	+0.0
1,232,142	-		LRK54_RS05700	0.11	+0.4
1,232,142	-		LRK54_RS05700	0.11	+0.2
1,232,264	+		LRK54_RS05700	0.26	-1.7
1,232,264	+		LRK54_RS05700	0.26	-0.5
1,232,264	+		LRK54_RS05700	0.26	+0.7
1,232,264	+		LRK54_RS05700	0.26	+0.7
1,232,264	+		LRK54_RS05700	0.26	+1.9
1,232,264	+		LRK54_RS05700	0.26	-0.9
1,232,264	+		LRK54_RS05700	0.26	-0.2
1,232,264	+		LRK54_RS05700	0.26	+0.7
1,232,264	+		LRK54_RS05700	0.26	-0.3
1,232,265	-		LRK54_RS05700	0.26	-0.0
1,232,265	-		LRK54_RS05700	0.26	-0.9
1,232,265	-		LRK54_RS05700	0.26	-1.6
1,232,265	-		LRK54_RS05700	0.26	-0.8
1,232,265	-		LRK54_RS05700	0.26	+1.8
1,232,265	-		LRK54_RS05700	0.26	-0.4
1,232,265	-		LRK54_RS05700	0.26	-0.4
1,232,265	-		LRK54_RS05700	0.26	-0.6
1,232,265	-		LRK54_RS05700	0.26	+0.6
1,232,265	-		LRK54_RS05700	0.26	+0.4
1,232,493	+		LRK54_RS05700	0.54	-0.0
1,232,493	+		LRK54_RS05700	0.54	+1.6
1,232,493	+		LRK54_RS05700	0.54	+1.7
1,232,493	+		LRK54_RS05700	0.54	-0.4
1,232,494	-		LRK54_RS05700	0.54	-0.4
1,232,494	-		LRK54_RS05700	0.54	-0.8
1,232,494	-		LRK54_RS05700	0.54	-0.4
1,232,494	-		LRK54_RS05700	0.54	-0.8
1,232,494	-		LRK54_RS05700	0.54	-0.7
1,232,494	-		LRK54_RS05700	0.54	+0.0
1,232,708	+		LRK54_RS05700	0.80	-1.2
1,232,708	+		LRK54_RS05700	0.80	+0.1
1,232,708	+		LRK54_RS05700	0.80	+0.3
1,232,708	+		LRK54_RS05700	0.80	+1.1
1,232,708	+		LRK54_RS05700	0.80	-2.0
1,232,708	+		LRK54_RS05700	0.80	-1.3
1,232,708	+		LRK54_RS05700	0.80	-0.2
1,232,708	+		LRK54_RS05700	0.80	-1.2
1,232,708	+		LRK54_RS05700	0.80	-1.2
1,232,708	+		LRK54_RS05700	0.80	+0.1
1,232,708	+		LRK54_RS05700	0.80	+0.2
1,232,708	+		LRK54_RS05700	0.80	+0.4
1,232,708	+		LRK54_RS05700	0.80	-0.8
1,232,708	+		LRK54_RS05700	0.80	+0.4
1,232,708	+		LRK54_RS05700	0.80	-1.2
1,232,708	+		LRK54_RS05700	0.80	-1.0
1,232,708	+		LRK54_RS05700	0.80	-0.8
1,232,708	+		LRK54_RS05700	0.80	-0.9
1,232,708	+		LRK54_RS05700	0.80	-0.5
1,232,708	+		LRK54_RS05700	0.80	+0.6
1,232,708	+		LRK54_RS05700	0.80	-0.6
1,232,708	+		LRK54_RS05700	0.80	+0.2
1,232,708	+		LRK54_RS05700	0.80	+0.7
1,232,708	+		LRK54_RS05700	0.80	+0.7
1,232,708	+		LRK54_RS05700	0.80	-1.6
1,232,708	+		LRK54_RS05700	0.80	-0.2
1,232,708	+		LRK54_RS05700	0.80	-1.5
1,232,708	+		LRK54_RS05700	0.80	+0.6
1,232,708	+		LRK54_RS05700	0.80	+1.6
1,232,709	-		LRK54_RS05700	0.80	-0.8
1,232,709	-		LRK54_RS05700	0.80	-0.6
1,232,709	-		LRK54_RS05700	0.80	-0.2
1,232,709	-		LRK54_RS05700	0.80	+0.3
1,232,709	-		LRK54_RS05700	0.80	-0.0
1,232,709	-		LRK54_RS05700	0.80	-1.2
1,232,709	-		LRK54_RS05700	0.80	-0.7
1,232,709	-		LRK54_RS05700	0.80	-1.4
1,232,709	-		LRK54_RS05700	0.80	+0.3
1,232,709	-		LRK54_RS05700	0.80	-2.0
1,232,709	-		LRK54_RS05700	0.80	+0.0
1,232,709	-		LRK54_RS05700	0.80	+0.1
1,232,709	-		LRK54_RS05700	0.80	-0.2
1,232,709	-		LRK54_RS05700	0.80	+0.7
1,232,709	-		LRK54_RS05700	0.80	-0.3
1,232,709	-		LRK54_RS05700	0.80	-0.9
1,232,709	-		LRK54_RS05700	0.80	+0.9
1,232,709	-		LRK54_RS05700	0.80	+0.4
1,232,709	-		LRK54_RS05700	0.80	-0.9
1,232,709	-		LRK54_RS05700	0.80	+0.8
1,232,709	-		LRK54_RS05700	0.80	-0.8
1,232,709	-		LRK54_RS05700	0.80	-1.4
1,232,709	-		LRK54_RS05700	0.80	+0.0
1,232,709	-		LRK54_RS05700	0.80	-0.6
1,232,709	-		LRK54_RS05700	0.80	+0.3
1,232,709	-		LRK54_RS05700	0.80	-0.1
1,232,709	-		LRK54_RS05700	0.80	-1.1
1,232,709	-		LRK54_RS05700	0.80	+0.0
1,232,709	-		LRK54_RS05700	0.80	-2.0
1,232,709	-		LRK54_RS05700	0.80	+0.1
1,232,709	-		LRK54_RS05700	0.80	-0.8
1,232,709	-		LRK54_RS05700	0.80	-0.2
1,232,709	-		LRK54_RS05700	0.80	-2.2
1,232,709	-		LRK54_RS05700	0.80	-1.2
1,232,732	+		LRK54_RS05700	0.83	+0.4
1,232,732	+		LRK54_RS05700	0.83	-0.1
1,232,732	+		LRK54_RS05700	0.83	-1.0
1,232,732	+		LRK54_RS05700	0.83	+0.4
1,232,732	+		LRK54_RS05700	0.83	-0.0
1,232,732	+		LRK54_RS05700	0.83	+1.6
1,232,732	+		LRK54_RS05700	0.83	-0.8
1,232,732	+		LRK54_RS05700	0.83	-0.9
1,232,732	+		LRK54_RS05700	0.83	+3.3
1,232,732	+		LRK54_RS05700	0.83	-0.7
1,232,733	-		LRK54_RS05700	0.83	+0.1
1,232,733	-		LRK54_RS05700	0.83	+0.3
1,232,733	-		LRK54_RS05700	0.83	+0.2
1,232,733	-		LRK54_RS05700	0.83	-0.3
1,232,733	-		LRK54_RS05700	0.83	+0.9
1,232,733	-		LRK54_RS05700	0.83	+0.7
1,232,733	-		LRK54_RS05700	0.83	+0.2
1,232,733	-		LRK54_RS05700	0.83	+0.7
1,232,733	-		LRK54_RS05700	0.83	-0.7
1,232,733	-		LRK54_RS05700	0.83	+0.3
1,232,733	-		LRK54_RS05700	0.83	-0.4
1,232,768	+		LRK54_RS05700	0.87	+0.2
1,232,768	+		LRK54_RS05700	0.87	-0.7
1,232,768	+		LRK54_RS05700	0.87	-0.3
1,232,768	+		LRK54_RS05700	0.87	-1.5
1,232,768	+		LRK54_RS05700	0.87	+0.2
1,232,768	+		LRK54_RS05700	0.87	+0.6
1,232,768	+		LRK54_RS05700	0.87	+0.1
1,232,768	+		LRK54_RS05700	0.87	+0.2
1,232,768	+		LRK54_RS05700	0.87	+0.1
1,232,768	+		LRK54_RS05700	0.87	+0.2
1,232,768	+		LRK54_RS05700	0.87	-1.2
1,232,768	+		LRK54_RS05700	0.87	-0.3
1,232,768	+		LRK54_RS05700	0.87	-0.5
1,232,768	+		LRK54_RS05700	0.87	-0.3
1,232,768	+		LRK54_RS05700	0.87	+2.3
1,232,769	-		LRK54_RS05700	0.87	-0.4
1,232,769	-		LRK54_RS05700	0.87	-0.7
1,232,769	-		LRK54_RS05700	0.87	+0.8
1,232,769	-		LRK54_RS05700	0.87	-1.1
1,232,769	-		LRK54_RS05700	0.87	-0.1
1,232,769	-		LRK54_RS05700	0.87	-0.4
1,232,769	-		LRK54_RS05700	0.87	-1.8
1,232,769	-		LRK54_RS05700	0.87	-0.3
1,232,769	-		LRK54_RS05700	0.87	-0.1
1,232,769	-		LRK54_RS05700	0.87	-0.3
1,232,769	-		LRK54_RS05700	0.87	+0.1
1,232,769	-		LRK54_RS05700	0.87	-0.5
1,232,769	-		LRK54_RS05700	0.87	+0.0
1,232,769	-		LRK54_RS05700	0.87	+0.8
1,232,817	-				+0.1
1,232,817	-				+0.2
1,232,855	+				-0.1
1,232,855	+				-0.1
1,232,855	+				-0.2
1,232,855	+				+0.5
1,232,855	+				-0.3
1,232,855	+				+0.4
1,232,855	+				-0.3
1,232,855	+				+0.4
1,232,855	+				-0.5
1,232,855	+				-0.9
1,232,856	-				-0.2
1,232,856	-				+0.6
1,232,856	-				+0.5
1,232,856	-				-0.1
1,232,856	-				+0.6
1,232,856	-				+0.2
1,232,856	-				+0.1
1,232,856	-				-0.4
1,232,856	-				+1.1
1,232,856	-				+0.6
1,232,856	-				+1.1
1,232,856	-				-0.1
1,232,905	-				+1.8
1,232,905	-				+1.0
1,232,942	+				+1.6
1,232,943	-				+2.3
1,232,943	-				+0.4
1,232,943	-				+0.1
1,232,943	-				+0.4