Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05655

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
1,220,394	+		LRK54_RS05650	0.35	-1.5
1,220,394	+		LRK54_RS05650	0.35	-0.5
1,220,394	+		LRK54_RS05650	0.35	-1.0
1,220,569	+		LRK54_RS05650	0.47	-0.3
1,220,569	+		LRK54_RS05650	0.47	-0.9
1,220,613	-		LRK54_RS05650	0.50	-1.8
1,220,769	+		LRK54_RS05650	0.61	-0.7
1,220,821	+		LRK54_RS05650	0.65	+1.6
1,220,821	+		LRK54_RS05650	0.65	-0.7
1,220,821	+		LRK54_RS05650	0.65	-0.7
1,220,822	-		LRK54_RS05650	0.65	+1.6
1,220,822	-		LRK54_RS05650	0.65	-1.2
1,220,822	-		LRK54_RS05650	0.65	+0.7
1,220,822	-		LRK54_RS05650	0.65	-0.5
1,220,822	-		LRK54_RS05650	0.65	+2.9
1,220,822	-		LRK54_RS05650	0.65	-0.0
1,220,822	-		LRK54_RS05650	0.65	-1.2
1,220,822	-		LRK54_RS05650	0.65	-1.2
1,220,836	+		LRK54_RS05650	0.66	+0.7
1,220,837	-		LRK54_RS05650	0.66	-0.5
1,220,948	-		LRK54_RS05650	0.74	-1.0
1,220,948	-		LRK54_RS05650	0.74	-1.7
1,221,009	+		LRK54_RS05650	0.79	-0.5
1,221,010	-		LRK54_RS05650	0.79	-0.5
1,221,173	-				-0.5
1,221,251	-				+0.3
1,221,259	+				-0.3
1,221,279	+				-0.3
1,221,279	+				-1.7
1,221,380	+				-1.0
1,221,380	+				-0.0
1,221,381	-		LRK54_RS05655	0.10	+0.3
1,221,381	-		LRK54_RS05655	0.10	-1.3
1,221,381	-		LRK54_RS05655	0.10	-0.9
1,221,467	+		LRK54_RS05655	0.20	-2.0
1,221,468	-		LRK54_RS05655	0.21	+0.7
1,221,637	+		LRK54_RS05655	0.41	-1.5
1,221,638	-		LRK54_RS05655	0.41	-1.4
1,221,778	+		LRK54_RS05655	0.58	-0.7
1,221,779	-		LRK54_RS05655	0.58	-0.7
1,221,801	+		LRK54_RS05655	0.61	+0.5
1,221,852	-		LRK54_RS05655	0.67	-1.0
1,221,951	+		LRK54_RS05655	0.79	-0.3
1,221,951	+		LRK54_RS05655	0.79	-1.3
1,221,952	-		LRK54_RS05655	0.79	+1.3
1,221,952	-		LRK54_RS05655	0.79	-0.3
1,221,952	-		LRK54_RS05655	0.79	-0.3
1,221,952	-		LRK54_RS05655	0.79	-0.0
1,221,952	-		LRK54_RS05655	0.79	+0.7
1,221,953	+		LRK54_RS05655	0.79	-0.3
1,221,953	+		LRK54_RS05655	0.79	+0.3
1,221,954	-		LRK54_RS05655	0.80	-0.3
1,221,954	-		LRK54_RS05655	0.80	-0.9
1,221,992	-		LRK54_RS05655	0.84	-0.5
1,221,992	-		LRK54_RS05655	0.84	-0.0
1,222,051	+				-0.9
1,222,051	+				-1.3
1,222,052	-				-2.0
1,222,109	+				+0.3
1,222,132	+				-1.6
1,222,133	-				-0.6
1,222,133	-				+0.8
1,222,133	-				-1.3
1,222,133	-				+0.9
1,222,133	-				-0.3
1,222,143	+				+1.3
1,222,144	-				+0.2
1,222,157	+				-1.8
1,222,157	+				-0.0
1,222,158	-				+0.2
1,222,158	-				+0.3
1,222,188	+				-1.4
1,222,188	+				-0.0
1,222,189	-				+0.8
1,222,189	-				+0.0
1,222,189	-				-1.0
1,222,558	+		LRK54_RS05660	0.27	-1.0
1,222,558	+		LRK54_RS05660	0.27	-1.4
1,222,559	-		LRK54_RS05660	0.27	+0.8
1,222,559	-		LRK54_RS05660	0.27	-0.8
1,222,559	-		LRK54_RS05660	0.27	-2.0
1,222,559	-		LRK54_RS05660	0.27	+0.4
1,222,559	-		LRK54_RS05660	0.27	-0.7
1,222,559	-		LRK54_RS05660	0.27	-1.9
1,222,559	-		LRK54_RS05660	0.27	-0.2
1,222,792	+		LRK54_RS05660	0.47	-0.7
1,222,792	+		LRK54_RS05660	0.47	+0.7
1,222,792	+		LRK54_RS05660	0.47	-0.0
1,222,792	+		LRK54_RS05660	0.47	-0.5
1,222,792	+		LRK54_RS05660	0.47	-0.3
1,222,792	+		LRK54_RS05660	0.47	-0.3
1,222,792	+		LRK54_RS05660	0.47	+0.7
1,222,792	+		LRK54_RS05660	0.47	-2.2
1,222,792	+		LRK54_RS05660	0.47	+0.6
1,222,792	+		LRK54_RS05660	0.47	+1.1
1,222,792	+		LRK54_RS05660	0.47	+1.9
1,222,792	+		LRK54_RS05660	0.47	-1.4
1,222,792	+		LRK54_RS05660	0.47	+1.3
1,222,792	+		LRK54_RS05660	0.47	-0.0
1,222,793	-		LRK54_RS05660	0.47	-1.2
1,222,793	-		LRK54_RS05660	0.47	-0.2
1,222,793	-		LRK54_RS05660	0.47	-2.1
1,222,793	-		LRK54_RS05660	0.47	-0.5
1,222,793	-		LRK54_RS05660	0.47	-0.0
1,222,793	-		LRK54_RS05660	0.47	-0.5
1,222,793	-		LRK54_RS05660	0.47	+0.7
1,222,793	-		LRK54_RS05660	0.47	+0.7
1,222,793	-		LRK54_RS05660	0.47	+1.3
1,222,793	-		LRK54_RS05660	0.47	-1.3
1,222,793	-		LRK54_RS05660	0.47	-0.5
1,222,793	-		LRK54_RS05660	0.47	-1.5
1,222,793	-		LRK54_RS05660	0.47	+0.8
1,222,793	-		LRK54_RS05660	0.47	-0.9
1,222,793	-		LRK54_RS05660	0.47	-0.2
1,222,793	-		LRK54_RS05660	0.47	-0.5
1,222,793	-		LRK54_RS05660	0.47	-0.7
1,222,793	-		LRK54_RS05660	0.47	-1.4
1,222,793	-		LRK54_RS05660	0.47	-0.4
1,222,793	-		LRK54_RS05660	0.47	-0.8
1,222,793	-		LRK54_RS05660	0.47	+0.5
1,222,793	-		LRK54_RS05660	0.47	-1.2
1,222,793	-		LRK54_RS05660	0.47	+0.3
1,222,793	-		LRK54_RS05660	0.47	-0.4
1,222,793	-		LRK54_RS05660	0.47	-1.6
1,223,025	-		LRK54_RS05660	0.67	-0.0
1,223,077	+		LRK54_RS05660	0.72	+0.9
1,223,077	+		LRK54_RS05660	0.72	-0.7
1,223,077	+		LRK54_RS05660	0.72	-0.7
1,223,078	-		LRK54_RS05660	0.72	+0.1
1,223,078	-		LRK54_RS05660	0.72	+0.7
1,223,078	-		LRK54_RS05660	0.72	-1.9
1,223,078	-		LRK54_RS05660	0.72	+0.3
1,223,078	-		LRK54_RS05660	0.72	-0.9
1,223,078	-		LRK54_RS05660	0.72	+1.0
1,223,078	-		LRK54_RS05660	0.72	+0.1
1,223,078	-		LRK54_RS05660	0.72	-0.4
1,223,078	-		LRK54_RS05660	0.72	-0.2
1,223,078	-		LRK54_RS05660	0.72	-1.7
1,223,078	-		LRK54_RS05660	0.72	+1.3
1,223,078	-		LRK54_RS05660	0.72	-0.5
1,223,078	-		LRK54_RS05660	0.72	-1.7
1,223,078	-		LRK54_RS05660	0.72	-0.3
1,223,089	+		LRK54_RS05660	0.73	-0.0
1,223,089	+		LRK54_RS05660	0.73	-0.1
1,223,089	+		LRK54_RS05660	0.73	+2.3
1,223,090	-		LRK54_RS05660	0.73	+0.7
1,223,090	-		LRK54_RS05660	0.73	-1.3
1,223,090	-		LRK54_RS05660	0.73	-0.5
1,223,090	-		LRK54_RS05660	0.73	-0.6