Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05535

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
1,195,038	+		LRK54_RS05530	0.44	-0.2
1,195,038	+		LRK54_RS05530	0.44	+0.5
1,195,039	-		LRK54_RS05530	0.44	+0.6
1,195,039	-		LRK54_RS05530	0.44	-0.7
1,195,056	+		LRK54_RS05530	0.45	-0.9
1,195,056	+		LRK54_RS05530	0.45	-2.2
1,195,056	+		LRK54_RS05530	0.45	-1.3
1,195,056	+		LRK54_RS05530	0.45	-0.6
1,195,056	+		LRK54_RS05530	0.45	-1.4
1,195,056	+		LRK54_RS05530	0.45	-2.1
1,195,056	+		LRK54_RS05530	0.45	-1.9
1,195,056	+		LRK54_RS05530	0.45	-1.8
1,195,056	+		LRK54_RS05530	0.45	-0.0
1,195,056	+		LRK54_RS05530	0.45	-2.3
1,195,056	+		LRK54_RS05530	0.45	+0.7
1,195,057	-		LRK54_RS05530	0.45	-0.4
1,195,057	-		LRK54_RS05530	0.45	-1.2
1,195,057	-		LRK54_RS05530	0.45	-0.7
1,195,057	-		LRK54_RS05530	0.45	-0.7
1,195,057	-		LRK54_RS05530	0.45	-1.0
1,195,057	-		LRK54_RS05530	0.45	+1.0
1,195,057	-		LRK54_RS05530	0.45	-1.0
1,195,057	-		LRK54_RS05530	0.45	-0.7
1,195,057	-		LRK54_RS05530	0.45	+2.3
1,195,057	-		LRK54_RS05530	0.45	-1.9
1,195,057	-		LRK54_RS05530	0.45	-0.6
1,195,089	+		LRK54_RS05530	0.47	+0.7
1,195,108	-		LRK54_RS05530	0.48	+0.8
1,195,122	+		LRK54_RS05530	0.49	-1.8
1,195,122	+		LRK54_RS05530	0.49	+0.3
1,195,123	-		LRK54_RS05530	0.49	-0.5
1,195,123	-		LRK54_RS05530	0.49	-1.9
1,195,123	-		LRK54_RS05530	0.49	-0.6
1,195,123	-		LRK54_RS05530	0.49	-1.4
1,195,123	-		LRK54_RS05530	0.49	-1.9
1,195,123	-		LRK54_RS05530	0.49	-0.3
1,195,405	+		LRK54_RS05530	0.67	-1.8
1,195,405	+		LRK54_RS05530	0.67	-0.9
1,195,581	+		LRK54_RS05530	0.78	-1.5
1,195,602	+		LRK54_RS05530	0.79	-0.0
1,195,602	+		LRK54_RS05530	0.79	+0.3
1,195,603	-		LRK54_RS05530	0.79	-0.5
1,195,647	+		LRK54_RS05530	0.82	+1.9
1,195,647	+		LRK54_RS05530	0.82	+1.3
1,195,647	+		LRK54_RS05530	0.82	-0.7
1,195,737	+		LRK54_RS05530	0.88	-0.0
1,195,738	-		LRK54_RS05530	0.88	-1.1
1,195,738	-		LRK54_RS05530	0.88	-0.0
1,195,738	-		LRK54_RS05530	0.88	-1.9
1,195,738	-		LRK54_RS05530	0.88	-0.9
1,195,776	+		LRK54_RS05530	0.90	-0.0
1,195,777	-				-0.9
1,195,777	-				+0.3
1,195,777	-				+0.8
1,195,777	-				-0.5
1,195,923	+				+0.3
1,195,923	+				+0.3
1,195,923	+				+0.2
1,195,923	+				-0.8
1,195,924	-				-1.4
1,195,924	-				-2.0
1,195,924	-				+0.1
1,195,935	+				-0.5
1,195,935	+				-0.2
1,195,935	+				-0.0
1,195,935	+				+0.1
1,195,935	+				+0.2
1,195,935	+				-0.1
1,195,935	+				+1.0
1,195,935	+				-0.5
1,195,935	+				-0.6
1,195,935	+				-0.3
1,195,936	-				-0.4
1,195,936	-				-0.9
1,195,936	-				-1.7
1,195,936	-				-0.2
1,195,936	-				-1.7
1,195,936	-				-0.4
1,195,936	-				-0.6
1,195,936	-				-0.3
1,196,170	+		LRK54_RS05535	0.23	+0.1
1,196,170	+		LRK54_RS05535	0.23	+0.1
1,196,170	+		LRK54_RS05535	0.23	-0.2
1,196,170	+		LRK54_RS05535	0.23	-0.9
1,196,170	+		LRK54_RS05535	0.23	+1.3
1,196,170	+		LRK54_RS05535	0.23	-0.3
1,196,170	+		LRK54_RS05535	0.23	-1.0
1,196,170	+		LRK54_RS05535	0.23	-1.4
1,196,170	+		LRK54_RS05535	0.23	+0.8
1,196,171	-		LRK54_RS05535	0.23	-0.3
1,196,171	-		LRK54_RS05535	0.23	-1.0
1,196,171	-		LRK54_RS05535	0.23	-0.3
1,196,171	-		LRK54_RS05535	0.23	-2.1
1,196,171	-		LRK54_RS05535	0.23	+0.1
1,196,171	-		LRK54_RS05535	0.23	+0.7
1,196,171	-		LRK54_RS05535	0.23	-1.5
1,196,171	-		LRK54_RS05535	0.23	-0.2
1,196,171	-		LRK54_RS05535	0.23	-0.9
1,196,171	-		LRK54_RS05535	0.23	+0.2
1,196,171	-		LRK54_RS05535	0.23	-1.0
1,196,173	+		LRK54_RS05535	0.23	-1.3
1,196,173	+		LRK54_RS05535	0.23	-0.5
1,196,173	+		LRK54_RS05535	0.23	-0.5
1,196,173	+		LRK54_RS05535	0.23	-1.2
1,196,173	+		LRK54_RS05535	0.23	-0.9
1,196,173	+		LRK54_RS05535	0.23	+1.0
1,196,174	-		LRK54_RS05535	0.23	-0.0
1,196,174	-		LRK54_RS05535	0.23	+0.7
1,196,174	-		LRK54_RS05535	0.23	-0.0
1,196,174	-		LRK54_RS05535	0.23	+0.9
1,196,174	-		LRK54_RS05535	0.23	-0.5
1,196,174	-		LRK54_RS05535	0.23	+0.7
1,196,174	-		LRK54_RS05535	0.23	-0.9
1,196,174	-		LRK54_RS05535	0.23	-0.5
1,196,251	+		LRK54_RS05535	0.31	-1.6
1,196,251	+		LRK54_RS05535	0.31	+1.7
1,196,251	+		LRK54_RS05535	0.31	+0.1
1,196,251	+		LRK54_RS05535	0.31	-0.5
1,196,251	+		LRK54_RS05535	0.31	+0.3
1,196,251	+		LRK54_RS05535	0.31	+0.5
1,196,252	-		LRK54_RS05535	0.32	-0.3
1,196,252	-		LRK54_RS05535	0.32	-0.7
1,196,252	-		LRK54_RS05535	0.32	+0.7
1,196,252	-		LRK54_RS05535	0.32	+1.0
1,196,252	-		LRK54_RS05535	0.32	-0.5
1,196,252	-		LRK54_RS05535	0.32	-0.6
1,196,252	-		LRK54_RS05535	0.32	-1.0
1,196,252	-		LRK54_RS05535	0.32	-0.3
1,196,252	-		LRK54_RS05535	0.32	-0.7
1,196,268	+		LRK54_RS05535	0.33	-0.7
1,196,268	+		LRK54_RS05535	0.33	+0.1
1,196,268	+		LRK54_RS05535	0.33	-0.6
1,196,268	+		LRK54_RS05535	0.33	-1.6
1,196,269	-		LRK54_RS05535	0.33	+1.0
1,196,269	-		LRK54_RS05535	0.33	-0.3
1,196,269	-		LRK54_RS05535	0.33	+1.1
1,196,269	-		LRK54_RS05535	0.33	-0.3
1,196,269	-		LRK54_RS05535	0.33	-0.3
1,196,284	+		LRK54_RS05535	0.35	+0.9
1,196,284	+		LRK54_RS05535	0.35	+0.7
1,196,848	+				-0.0
1,196,848	+				-0.5
1,196,848	+				-0.4
1,196,849	-				-0.1
1,196,849	-				-1.1
1,196,849	-				-0.7
1,196,849	-				-1.2
1,196,849	-				-0.5
1,197,225	-		LRK54_RS05540	0.34	-0.0
1,197,574	+		LRK54_RS05540	0.70	+1.1
1,197,574	+		LRK54_RS05540	0.70	+0.3
1,197,574	+				+0.7
1,197,574	+		LRK54_RS05540	0.70	-0.9
1,197,574	+		LRK54_RS05540	0.70	+1.3
1,197,574	+		LRK54_RS05540	0.70	-0.6
1,197,574	+		LRK54_RS05540	0.70	-0.3
1,197,574	+		LRK54_RS05540	0.70	+0.3
1,197,575	-		LRK54_RS05540	0.70	-0.5
1,197,575	-		LRK54_RS05540	0.70	-0.5
1,197,575	-		LRK54_RS05540	0.70	-1.6
1,197,575	-		LRK54_RS05540	0.70	+0.7
1,197,575	-		LRK54_RS05540	0.70	+0.7
1,197,575	-		LRK54_RS05540	0.70	+0.7
1,197,575	-		LRK54_RS05540	0.70	+2.3
1,197,575	-		LRK54_RS05540	0.70	-1.8
1,197,575	-		LRK54_RS05540	0.70	+0.5
1,197,575	-		LRK54_RS05540	0.70	-0.3
1,197,575	-		LRK54_RS05540	0.70	+0.3
1,197,647	+		LRK54_RS05540	0.77	-1.3
1,197,648	-		LRK54_RS05540	0.77	-0.3
1,197,648	-		LRK54_RS05540	0.77	-0.7
1,197,648	-		LRK54_RS05540	0.77	-0.0
1,197,726	+		LRK54_RS05540	0.85	-0.7
1,197,726	+		LRK54_RS05540	0.85	+0.3
1,197,726	+		LRK54_RS05540	0.85	+0.3
1,197,726	+		LRK54_RS05540	0.85	-0.5
1,197,727	-		LRK54_RS05540	0.85	-0.8
1,197,727	-		LRK54_RS05540	0.85	-0.5
1,197,727	-		LRK54_RS05540	0.85	-0.6
1,197,821	+				-0.9
1,197,821	+				-0.7
1,197,821	+				+0.9
1,197,821	+				-1.2
1,197,821	+				+0.7
1,197,821	+				-0.1
1,197,822	-				+0.3
1,197,822	-				-0.1
1,197,822	-				-1.5
1,197,822	-				+2.9
1,197,822	-				+0.7
1,197,822	-				-0.5
1,197,822	-				+1.3
1,197,836	+				+0.7
1,197,836	+				+0.9
1,197,836	+				+1.7
1,197,836	+				-0.5
1,197,836	+				+0.3
1,197,836	+				+2.9
1,197,837	-				-0.9
1,197,837	-				-0.5
1,197,837	-				+1.0
1,197,837	-				+0.7
1,197,837	-				-0.0