Strain Fitness in Rhodanobacter denitrificans FW104-10B01

Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05485

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG

download strain data

Per-strain Table

Position	Strand	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
				remove
1,183,419	-			-0.8
1,183,419	-			-0.6
1,183,419	-			-0.2
1,183,419	-			-0.3
1,183,655	+	LRK54_RS05480	0.21	-1.4
1,183,655	+	LRK54_RS05480	0.21	+1.7
1,183,655	+	LRK54_RS05480	0.21	-0.9
1,183,655	+	LRK54_RS05480	0.21	-1.7
1,183,655	+	LRK54_RS05480	0.21	+1.1
1,183,655	+	LRK54_RS05480	0.21	-0.8
1,183,655	+	LRK54_RS05480	0.21	-1.1
1,183,655	+	LRK54_RS05480	0.21	-0.4
1,183,655	+	LRK54_RS05480	0.21	-1.2
1,183,655	+	LRK54_RS05480	0.21	-0.1
1,183,655	+	LRK54_RS05480	0.21	-0.2
1,183,655	+	LRK54_RS05480	0.21	-0.1
1,183,656	-	LRK54_RS05480	0.21	-0.2
1,183,656	-	LRK54_RS05480	0.21	-0.7
1,183,656	-	LRK54_RS05480	0.21	-1.7
1,183,656	-	LRK54_RS05480	0.21	+0.9
1,183,656	-	LRK54_RS05480	0.21	+1.7
1,183,656	-	LRK54_RS05480	0.21	+0.3
1,183,656	-	LRK54_RS05480	0.21	-0.9
1,183,656	-	LRK54_RS05480	0.21	-0.2
1,183,656	-	LRK54_RS05480	0.21	-0.6
1,183,656	-	LRK54_RS05480	0.21	-0.0
1,183,656	-	LRK54_RS05480	0.21	-0.0
1,183,674	+	LRK54_RS05480	0.24	-0.6
1,183,674	+	LRK54_RS05480	0.24	+0.4
1,183,674	+	LRK54_RS05480	0.24	-1.7
1,183,674	+	LRK54_RS05480	0.24	-0.5
1,183,674	+	LRK54_RS05480	0.24	-0.4
1,183,674	+	LRK54_RS05480	0.24	-1.4
1,183,675	-	LRK54_RS05480	0.24	-1.0
1,183,675	-	LRK54_RS05480	0.24	+0.5
1,183,675	-	LRK54_RS05480	0.24	-2.4
1,183,676	+	LRK54_RS05480	0.25	-1.0
1,183,676	+	LRK54_RS05480	0.25	+0.3
1,183,676	+	LRK54_RS05480	0.25	-0.1
1,183,676	+	LRK54_RS05480	0.25	-0.2
1,183,676	+	LRK54_RS05480	0.25	-0.5
1,183,676	+	LRK54_RS05480	0.25	-1.2
1,183,676	+	LRK54_RS05480	0.25	+0.5
1,183,676	+	LRK54_RS05480	0.25	-0.0
1,183,676	+	LRK54_RS05480	0.25	+0.6
1,183,676	+	LRK54_RS05480	0.25	+0.1
1,183,676	+	LRK54_RS05480	0.25	-0.5
1,183,676	+	LRK54_RS05480	0.25	-1.4
1,183,676	+	LRK54_RS05480	0.25	-0.4
1,183,676	+	LRK54_RS05480	0.25	-1.7
1,183,677	-	LRK54_RS05480	0.25	-0.4
1,183,677	-	LRK54_RS05480	0.25	+4.3
1,183,677	-	LRK54_RS05480	0.25	+0.3
1,183,677	-	LRK54_RS05480	0.25	-0.4
1,183,677	-	LRK54_RS05480	0.25	-0.9
1,183,677	-	LRK54_RS05480	0.25	-1.1
1,183,677	-	LRK54_RS05480	0.25	+1.3
1,183,677	-	LRK54_RS05480	0.25	-0.8
1,183,677	-	LRK54_RS05480	0.25	-0.0
1,183,677	-	LRK54_RS05480	0.25	-1.5
1,183,677	-	LRK54_RS05480	0.25	+0.3
1,183,677	-	LRK54_RS05480	0.25	-0.1
1,183,677	-	LRK54_RS05480	0.25	+0.1
1,183,677	-	LRK54_RS05480	0.25	-0.0
1,183,767	-	LRK54_RS05480	0.40	-0.3
1,183,767	-	LRK54_RS05480	0.40	+1.1
1,183,943	+	LRK54_RS05480	0.70	-0.3
1,183,943	+	LRK54_RS05480	0.70	-0.4
1,183,944	-	LRK54_RS05480	0.70	-1.2
1,183,944	-	LRK54_RS05480	0.70	+0.3
1,184,027	+	LRK54_RS05480	0.84	-1.3
1,184,027	+	LRK54_RS05480	0.84	+0.8
1,184,028	-	LRK54_RS05480	0.85	-1.3
1,184,028	-	LRK54_RS05480	0.85	-0.1
1,184,028	-	LRK54_RS05480	0.85	-0.3
1,184,028	-	LRK54_RS05480	0.85	+0.9
1,184,028	-	LRK54_RS05480	0.85	+0.5
1,184,057	+	LRK54_RS05480	0.89	+0.3
1,184,057	+	LRK54_RS05480	0.89	-0.3
1,184,057	+	LRK54_RS05480	0.89	-0.2
1,184,057	+	LRK54_RS05480	0.89	-0.3
1,184,057	+	LRK54_RS05480	0.89	-1.2
1,184,057	+	LRK54_RS05480	0.89	-0.4
1,184,057	+	LRK54_RS05480	0.89	-0.5
1,184,057	+	LRK54_RS05480	0.89	-0.3
1,184,058	-	LRK54_RS05480	0.90	+2.3
1,184,058	-	LRK54_RS05480	0.90	-1.2
1,184,058	-	LRK54_RS05480	0.90	+0.4
1,184,058	-	LRK54_RS05480	0.90	+0.1
1,184,058	-	LRK54_RS05480	0.90	-0.7
1,184,072	+			-0.1
1,184,072	+			-1.0
1,184,072	+			-0.2
1,184,072	+			-0.5
1,184,072	+			-1.4
1,184,072	+			-2.0
1,184,072	+			+0.0
1,184,072	+			+0.5
1,184,072	+			+1.1
1,184,072	+			-0.8
1,184,072	+			-1.9
1,184,072	+			+2.3
1,184,073	-			+0.7
1,184,073	-			-0.3
1,184,073	-			-0.3
1,184,073	-			-0.0
1,184,073	-			-0.8
1,184,073	-			+0.4
1,184,073	-			+1.8
1,184,073	-			+0.2
1,184,073	-			+0.9
1,184,073	-			+0.6
1,184,095	+			-2.2
1,184,095	+			-1.2
1,184,096	-			-0.1
1,184,096	-			+0.0
1,184,096	-			+0.4
1,184,096	-			-0.4
1,184,170	+			+0.2
1,184,170	+			+0.4
1,184,170	+			-0.2
1,184,170	+			+0.2
1,184,170	+			-0.4
1,184,170	+			+0.3
1,184,170	+			+0.9
1,184,170	+			+0.6
1,184,170	+			+1.1
1,184,170	+			+0.9
1,184,170	+			-0.5
1,184,170	+			+1.2
1,184,170	+			-1.0
1,184,170	+			+0.5
1,184,170	+			+0.8
1,184,171	-			+0.2
1,184,171	-			+1.0
1,184,171	-			-0.2
1,184,171	-			-0.1
1,184,171	-			-0.5
1,184,171	-			+0.0
1,184,171	-			+0.2
1,184,171	-			+0.3
1,184,171	-			+0.3
1,184,171	-			+0.8
1,184,171	-			+2.6
1,184,171	-			+0.3
1,184,171	-			+0.3
1,184,171	-			+1.4
1,184,171	-			+1.0
1,184,345	+	LRK54_RS05485	0.13	+1.0
1,184,345	+	LRK54_RS05485	0.13	+0.3
1,184,346	-	LRK54_RS05485	0.13	+0.0
1,184,346	-	LRK54_RS05485	0.13	+0.2
1,184,346	-	LRK54_RS05485	0.13	+0.0
1,184,447	+	LRK54_RS05485	0.21	-0.3
1,184,447	+	LRK54_RS05485	0.21	+1.0
1,184,597	+	LRK54_RS05485	0.32	+0.6
1,184,597	+	LRK54_RS05485	0.32	+1.9
1,184,597	+	LRK54_RS05485	0.32	+0.6
1,184,597	+	LRK54_RS05485	0.32	-0.6
1,184,597	+	LRK54_RS05485	0.32	+0.3
1,184,597	+	LRK54_RS05485	0.32	+0.0
1,184,597	+	LRK54_RS05485	0.32	+1.4
1,184,597	+	LRK54_RS05485	0.32	+0.5
1,184,597	+	LRK54_RS05485	0.32	+0.5
1,184,598	-	LRK54_RS05485	0.32	+0.4
1,184,598	-	LRK54_RS05485	0.32	-0.0
1,184,598	-	LRK54_RS05485	0.32	+0.4
1,184,598	-	LRK54_RS05485	0.32	+0.3
1,184,598	-	LRK54_RS05485	0.32	+0.9
1,184,598	-	LRK54_RS05485	0.32	+1.3
1,184,598	-	LRK54_RS05485	0.32	+1.1
1,184,598	-	LRK54_RS05485	0.32	+0.1
1,184,598	-	LRK54_RS05485	0.32	+1.5
1,184,598	-	LRK54_RS05485	0.32	+0.4
1,184,598	-	LRK54_RS05485	0.32	+0.7
1,184,598	-	LRK54_RS05485	0.32	+0.5
1,184,684	+	LRK54_RS05485	0.39	-0.0
1,184,684	+	LRK54_RS05485	0.39	+0.8
1,184,684	+	LRK54_RS05485	0.39	-0.1
1,184,684	+	LRK54_RS05485	0.39	+0.7
1,184,684	+	LRK54_RS05485	0.39	-0.3
1,184,684	+	LRK54_RS05485	0.39	-0.1
1,184,684	+	LRK54_RS05485	0.39	+0.3
1,184,684	+	LRK54_RS05485	0.39	-0.5
1,184,684	+	LRK54_RS05485	0.39	-1.0
1,184,684	+	LRK54_RS05485	0.39	+0.8
1,184,685	-	LRK54_RS05485	0.39	+0.2
1,184,685	-	LRK54_RS05485	0.39	+1.0
1,184,685	-	LRK54_RS05485	0.39	+0.4
1,184,685	-	LRK54_RS05485	0.39	+0.1
1,184,685	-	LRK54_RS05485	0.39	+0.5
1,184,685	-	LRK54_RS05485	0.39	+1.3
1,184,685	-	LRK54_RS05485	0.39	+1.7
1,184,685	-	LRK54_RS05485	0.39	+0.6
1,184,685	-	LRK54_RS05485	0.39	-0.2
1,184,685	-	LRK54_RS05485	0.39	-1.8
1,184,685	-	LRK54_RS05485	0.39	+2.3
1,184,685	-	LRK54_RS05485	0.39	+0.6
1,184,685	-	LRK54_RS05485	0.39	+0.3
1,184,714	+	LRK54_RS05485	0.41	+0.0
1,184,714	+	LRK54_RS05485	0.41	+0.6
1,184,714	+	LRK54_RS05485	0.41	-0.2
1,184,714	+	LRK54_RS05485	0.41	+0.1
1,184,715	-	LRK54_RS05485	0.41	+0.1
1,184,715	-	LRK54_RS05485	0.41	+1.4
1,184,715	-	LRK54_RS05485	0.41	+0.5
1,184,715	-	LRK54_RS05485	0.41	-1.2
1,184,774	+	LRK54_RS05485	0.46	+0.2
1,184,774	+	LRK54_RS05485	0.46	-0.0
1,184,774	+	LRK54_RS05485	0.46	+1.6
1,184,774	+	LRK54_RS05485	0.46	+0.4
1,184,774	+	LRK54_RS05485	0.46	+0.7
1,184,774	+	LRK54_RS05485	0.46	+0.1
1,184,774	+	LRK54_RS05485	0.46	+0.1
1,184,775	-	LRK54_RS05485	0.46	-0.1
1,184,775	-	LRK54_RS05485	0.46	+0.9
1,184,843	+	LRK54_RS05485	0.51	+0.2
1,184,843	+	LRK54_RS05485	0.51	-0.0
1,184,843	+	LRK54_RS05485	0.51	+0.5
1,184,843	+	LRK54_RS05485	0.51	+0.8
1,184,843	+	LRK54_RS05485	0.51	+2.6
1,184,843	+	LRK54_RS05485	0.51	-0.2
1,184,843	+	LRK54_RS05485	0.51	-0.3
1,184,843	+	LRK54_RS05485	0.51	+0.6
1,184,843	+	LRK54_RS05485	0.51	+0.6
1,184,843	+	LRK54_RS05485	0.51	-0.3
1,184,843	+	LRK54_RS05485	0.51	+0.5
1,184,843	+	LRK54_RS05485	0.51	+0.4
1,184,843	+	LRK54_RS05485	0.51	+0.5
1,184,843	+	LRK54_RS05485	0.51	+3.3
1,184,844	-	LRK54_RS05485	0.51	+1.0
1,184,844	-	LRK54_RS05485	0.51	+1.5
1,184,844	-	LRK54_RS05485	0.51	-1.1
1,184,844	-	LRK54_RS05485	0.51	+0.7
1,184,844	-	LRK54_RS05485	0.51	+0.2
1,184,844	-	LRK54_RS05485	0.51	+0.6
1,184,844	-	LRK54_RS05485	0.51	+0.3
1,184,844	-	LRK54_RS05485	0.51	+0.7
1,184,844	-	LRK54_RS05485	0.51	-0.2
1,184,844	-	LRK54_RS05485	0.51	+0.7
1,184,844	-	LRK54_RS05485	0.51	-0.3
1,184,844	-	LRK54_RS05485	0.51	+0.5
1,184,870	+	LRK54_RS05485	0.53	+0.4
1,184,870	+	LRK54_RS05485	0.53	+0.9
1,184,870	+	LRK54_RS05485	0.53	+0.6
1,184,870	+	LRK54_RS05485	0.53	+0.8
1,184,871	-	LRK54_RS05485	0.53	+0.4
1,184,871	-	LRK54_RS05485	0.53	+0.9
1,184,871	-	LRK54_RS05485	0.53	+0.3
1,184,871	-	LRK54_RS05485	0.53	-0.1
1,184,897	+	LRK54_RS05485	0.55	-1.6
1,184,897	+	LRK54_RS05485	0.55	-0.1
1,184,897	+	LRK54_RS05485	0.55	+0.7
1,184,898	-	LRK54_RS05485	0.55	+1.2
1,184,898	-	LRK54_RS05485	0.55	-0.9
1,184,898	-	LRK54_RS05485	0.55	+1.7
1,184,990	+	LRK54_RS05485	0.62	+0.8
1,184,990	+	LRK54_RS05485	0.62	-0.5
1,184,990	+	LRK54_RS05485	0.62	-0.8
1,184,990	+	LRK54_RS05485	0.62	+0.3
1,184,990	+	LRK54_RS05485	0.62	+0.8
1,184,990	+	LRK54_RS05485	0.62	+0.5
1,184,990	+	LRK54_RS05485	0.62	-0.2
1,184,990	+	LRK54_RS05485	0.62	-0.6
1,184,990	+	LRK54_RS05485	0.62	-0.0
1,184,990	+	LRK54_RS05485	0.62	+0.4
1,184,991	-	LRK54_RS05485	0.62	+0.2
1,184,991	-	LRK54_RS05485	0.62	+0.8
1,184,991	-	LRK54_RS05485	0.62	+0.8
1,184,991	-	LRK54_RS05485	0.62	+1.2
1,184,991	-	LRK54_RS05485	0.62	+0.9
1,184,991	-	LRK54_RS05485	0.62	+0.4
1,184,991	-	LRK54_RS05485	0.62	-0.0
1,184,991	-	LRK54_RS05485	0.62	+0.2
1,184,991	-	LRK54_RS05485	0.62	+1.2
1,184,991	-	LRK54_RS05485	0.62	-0.7
1,184,991	-	LRK54_RS05485	0.62	+0.7
1,184,991	-	LRK54_RS05485	0.62	+0.0
1,184,991	-	LRK54_RS05485	0.62	+0.1
1,184,991	-	LRK54_RS05485	0.62	+0.1
1,184,991	-	LRK54_RS05485	0.62	-0.5
1,184,991	-	LRK54_RS05485	0.62	+0.5
1,184,991	-	LRK54_RS05485	0.62	+0.7
1,184,991	-	LRK54_RS05485	0.62	+0.3
1,184,991	-	LRK54_RS05485	0.62	+0.7
1,184,991	-	LRK54_RS05485	0.62	+0.1
1,184,991	-	LRK54_RS05485	0.62	+0.8
1,184,991	-	LRK54_RS05485	0.62	+0.0
1,184,991	-	LRK54_RS05485	0.62	+0.6
1,184,993	+	LRK54_RS05485	0.62	+2.6
1,184,994	-	LRK54_RS05485	0.62	-0.5
1,185,143	+	LRK54_RS05485	0.74	+0.2
1,185,143	+	LRK54_RS05485	0.74	-0.8
1,185,143	+	LRK54_RS05485	0.74	+0.5
1,185,143	+	LRK54_RS05485	0.74	+0.8
1,185,143	+	LRK54_RS05485	0.74	+0.8
1,185,143	+	LRK54_RS05485	0.74	+0.2
1,185,143	+	LRK54_RS05485	0.74	+0.6
1,185,143	+	LRK54_RS05485	0.74	+0.3
1,185,143	+	LRK54_RS05485	0.74	+2.2
1,185,143	+	LRK54_RS05485	0.74	+0.4
1,185,143	+	LRK54_RS05485	0.74	+0.5
1,185,143	+	LRK54_RS05485	0.74	+1.2
1,185,143	+	LRK54_RS05485	0.74	-0.4
1,185,144	-	LRK54_RS05485	0.74	+0.3
1,185,144	-	LRK54_RS05485	0.74	+0.0
1,185,144	-	LRK54_RS05485	0.74	+0.2
1,185,144	-	LRK54_RS05485	0.74	-1.2
1,185,144	-	LRK54_RS05485	0.74	+0.2
1,185,144	-	LRK54_RS05485	0.74	+0.1
1,185,144	-	LRK54_RS05485	0.74	+2.3
1,185,144	-	LRK54_RS05485	0.74	+0.6
1,185,182	+	LRK54_RS05485	0.77	+0.4
1,185,183	-	LRK54_RS05485	0.77	+0.5
1,185,183	-	LRK54_RS05485	0.77	+1.0
1,185,185	+	LRK54_RS05485	0.77	+0.2
1,185,185	+	LRK54_RS05485	0.77	+0.2
1,185,185	+	LRK54_RS05485	0.77	+0.4
1,185,185	+	LRK54_RS05485	0.77	+0.1
1,185,185	+	LRK54_RS05485	0.77	+0.9
1,185,185	+	LRK54_RS05485	0.77	+0.8
1,185,186	-	LRK54_RS05485	0.77	+0.9
1,185,186	-	LRK54_RS05485	0.77	-1.3
1,185,186	-	LRK54_RS05485	0.77	+1.1
1,185,206	+	LRK54_RS05485	0.79	+0.3
1,185,206	+	LRK54_RS05485	0.79	+0.5
1,185,206	+	LRK54_RS05485	0.79	+0.2
1,185,207	-	LRK54_RS05485	0.79	+0.4
1,185,207	-	LRK54_RS05485	0.79	-0.3
1,185,207	-	LRK54_RS05485	0.79	+0.1
1,185,207	-	LRK54_RS05485	0.79	-0.4
1,185,233	+	LRK54_RS05485	0.81	-0.0
1,185,233	+	LRK54_RS05485	0.81	+1.6
1,185,233	+	LRK54_RS05485	0.81	+0.5
1,185,233	+	LRK54_RS05485	0.81	+0.3
1,185,233	+	LRK54_RS05485	0.81	+1.1
1,185,233	+	LRK54_RS05485	0.81	+0.4
1,185,233	+	LRK54_RS05485	0.81	+0.4
1,185,233	+	LRK54_RS05485	0.81	+0.5
1,185,233	+	LRK54_RS05485	0.81	-1.8
1,185,233	+	LRK54_RS05485	0.81	+1.3
1,185,233	+	LRK54_RS05485	0.81	-0.9
1,185,233	+	LRK54_RS05485	0.81	+0.0
1,185,233	+	LRK54_RS05485	0.81	+0.6
1,185,234	-	LRK54_RS05485	0.81	+0.7
1,185,234	-	LRK54_RS05485	0.81	-0.6
1,185,234	-	LRK54_RS05485	0.81	-0.0
1,185,234	-	LRK54_RS05485	0.81	-0.1
1,185,287	+	LRK54_RS05485	0.85	+1.0
1,185,287	+	LRK54_RS05485	0.85	+0.3
1,185,287	+	LRK54_RS05485	0.85	-0.2
1,185,288	-	LRK54_RS05485	0.85	-0.2
1,185,288	-	LRK54_RS05485	0.85	+0.8
1,185,288	-	LRK54_RS05485	0.85	+0.7
1,185,783	+	LRK54_RS05490	0.22	+0.3
1,186,269	+	LRK54_RS05490	0.69	-1.7
1,186,269	+	LRK54_RS05490	0.69	-0.0
1,186,269	+	LRK54_RS05490	0.69	-1.1
1,186,269	+	LRK54_RS05490	0.69	+0.1
1,186,269	+	LRK54_RS05490	0.69	-1.2
1,186,269	+	LRK54_RS05490	0.69	+0.0
1,186,269	+	LRK54_RS05490	0.69	-1.5
1,186,269	+	LRK54_RS05490	0.69	-0.5
1,186,269	+	LRK54_RS05490	0.69	+0.6
1,186,269	+	LRK54_RS05490	0.69	+1.2
1,186,269	+	LRK54_RS05490	0.69	-0.0
1,186,269	+	LRK54_RS05490	0.69	-1.6
1,186,269	+	LRK54_RS05490	0.69	-0.6
1,186,269	+	LRK54_RS05490	0.69	+0.2
1,186,270	-	LRK54_RS05490	0.69	-0.2
1,186,270	-	LRK54_RS05490	0.69	-0.3
1,186,270	-	LRK54_RS05490	0.69	-0.4
1,186,270	-	LRK54_RS05490	0.69	-0.2
1,186,270	-	LRK54_RS05490	0.69	+0.1
1,186,270	-	LRK54_RS05490	0.69	-0.8
1,186,270	-	LRK54_RS05490	0.69	+0.1
1,186,270	-	LRK54_RS05490	0.69	-0.3
1,186,305	+	LRK54_RS05490	0.73	-0.9
1,186,305	+	LRK54_RS05490	0.73	-1.0
1,186,306	-	LRK54_RS05490	0.73	-1.4
1,186,306	-	LRK54_RS05490	0.73	-0.7
1,186,306	-	LRK54_RS05490	0.73	+0.4

Or see this region's nucleotide sequence