Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05440

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
1,171,263	+				-2.8
1,171,263	+				-0.9
1,171,264	-				-0.5
1,171,264	-				-1.2
1,172,239	+				+0.1
1,172,239	+				-1.6
1,172,239	+				-0.9
1,172,239	+				-0.3
1,172,239	+				-0.7
1,172,239	+				-1.5
1,172,239	+				+0.3
1,172,240	-				+1.0
1,172,240	-				-1.5
1,172,240	-				+0.3
1,172,240	-				-2.4
1,172,240	-				-2.8
1,172,240	-				-1.2
1,172,240	-				-1.0
1,172,240	-				-0.1
1,172,240	-				-2.5
1,172,240	-				-1.9
1,172,248	+				-1.0
1,172,248	+				+0.1
1,172,248	+				-1.2
1,172,248	+				+0.1
1,172,248	+				-1.0
1,172,249	-				-1.8
1,172,249	-				-1.0
1,172,249	-				-2.0
1,172,249	-				-1.0
1,172,249	-				-0.8
1,172,288	+				-0.9
1,172,507	+		LRK54_RS05440	0.31	-1.0
1,172,507	+		LRK54_RS05440	0.31	-2.3
1,172,508	-		LRK54_RS05440	0.31	+0.7
1,172,508	-		LRK54_RS05440	0.31	-1.2
1,172,508	-		LRK54_RS05440	0.31	-1.6
1,172,731	+		LRK54_RS05440	0.56	-2.5
1,172,731	+		LRK54_RS05440	0.56	-1.9
1,172,732	-		LRK54_RS05440	0.56	-0.1
1,172,732	-		LRK54_RS05440	0.56	-1.2
1,172,746	+		LRK54_RS05440	0.58	-1.7
1,172,746	+		LRK54_RS05440	0.58	-1.6
1,172,746	+		LRK54_RS05440	0.58	-0.2
1,172,746	+		LRK54_RS05440	0.58	-3.1
1,172,746	+		LRK54_RS05440	0.58	-1.4
1,172,746	+		LRK54_RS05440	0.58	-2.7
1,172,746	+		LRK54_RS05440	0.58	-0.8
1,172,746	+		LRK54_RS05440	0.58	+0.4
1,172,746	+		LRK54_RS05440	0.58	-2.0
1,172,746	+		LRK54_RS05440	0.58	-2.4
1,172,746	+		LRK54_RS05440	0.58	+0.7
1,172,746	+		LRK54_RS05440	0.58	-0.9
1,172,746	+		LRK54_RS05440	0.58	-1.2
1,172,746	+		LRK54_RS05440	0.58	-2.1
1,172,746	+		LRK54_RS05440	0.58	-1.3
1,172,746	+		LRK54_RS05440	0.58	+1.0
1,172,746	+		LRK54_RS05440	0.58	-1.6
1,172,746	+		LRK54_RS05440	0.58	-1.9
1,172,746	+		LRK54_RS05440	0.58	-0.8
1,172,746	+		LRK54_RS05440	0.58	-0.1
1,172,746	+		LRK54_RS05440	0.58	-2.2
1,172,746	+		LRK54_RS05440	0.58	+0.7
1,172,746	+		LRK54_RS05440	0.58	-0.0
1,172,746	+		LRK54_RS05440	0.58	-1.3
1,172,746	+		LRK54_RS05440	0.58	-1.0
1,172,747	-		LRK54_RS05440	0.58	-0.9
1,172,747	-		LRK54_RS05440	0.58	-0.6
1,172,747	-		LRK54_RS05440	0.58	-1.6
1,172,747	-		LRK54_RS05440	0.58	-1.6
1,172,747	-		LRK54_RS05440	0.58	+0.2
1,172,747	-		LRK54_RS05440	0.58	+0.1
1,172,747	-		LRK54_RS05440	0.58	-0.9
1,172,747	-		LRK54_RS05440	0.58	-0.1
1,172,747	-		LRK54_RS05440	0.58	-2.0
1,172,747	-		LRK54_RS05440	0.58	+0.3
1,172,747	-		LRK54_RS05440	0.58	-1.0
1,172,747	-		LRK54_RS05440	0.58	-1.6
1,172,747	-		LRK54_RS05440	0.58	-2.0
1,172,747	-		LRK54_RS05440	0.58	-3.0
1,172,747	-		LRK54_RS05440	0.58	-0.3
1,172,747	-		LRK54_RS05440	0.58	+0.0
1,172,747	-		LRK54_RS05440	0.58	-1.5
1,172,747	-		LRK54_RS05440	0.58	+1.7
1,172,747	-		LRK54_RS05440	0.58	-3.0
1,172,769	+		LRK54_RS05440	0.60	-1.3
1,172,769	+		LRK54_RS05440	0.60	-0.3
1,172,769	+		LRK54_RS05440	0.60	-0.3
1,172,769	+		LRK54_RS05440	0.60	-0.9
1,172,769	+		LRK54_RS05440	0.60	+0.1
1,172,770	-		LRK54_RS05440	0.60	-1.6
1,172,770	-		LRK54_RS05440	0.60	-0.3
1,172,770	-		LRK54_RS05440	0.60	-0.5
1,172,770	-		LRK54_RS05440	0.60	-0.3
1,172,770	-		LRK54_RS05440	0.60	-1.7
1,172,770	-		LRK54_RS05440	0.60	-1.0
1,172,770	-		LRK54_RS05440	0.60	-1.9
1,172,770	-		LRK54_RS05440	0.60	-0.6
1,172,845	+		LRK54_RS05440	0.68	-1.0
1,172,846	-		LRK54_RS05440	0.69	+0.3
1,172,846	-		LRK54_RS05440	0.69	-1.5
1,172,846	-		LRK54_RS05440	0.69	-1.7
1,173,157	+				-1.0
1,173,158	-				+0.2
1,173,164	+				+0.2
1,173,164	+				+1.6
1,173,164	+				+0.0
1,173,164	+				+0.2
1,173,164	+				-0.1
1,173,164	+				-2.3
1,173,164	+				+0.2
1,173,164	+				+0.2
1,173,164	+				-0.0
1,173,164	+				-0.2
1,173,164	+				-1.4
1,173,164	+				-0.7
1,173,164	+				+0.3
1,173,164	+				-0.2
1,173,164	+				-0.3
1,173,164	+				+0.3
1,173,164	+				-0.1
1,173,164	+				+0.0
1,173,164	+				-0.7
1,173,164	+				-0.1
1,173,164	+				-0.4
1,173,164	+				-0.1
1,173,164	+				+0.3
1,173,164	+				+0.3
1,173,164	+				-1.2
1,173,164	+				+2.3
1,173,164	+				+0.3
1,173,164	+				+0.1
1,173,164	+				+0.1
1,173,164	+				+0.7
1,173,164	+				-0.2
1,173,164	+				+0.2
1,173,164	+				-0.2
1,173,164	+				+0.8
1,173,164	+				-0.1
1,173,164	+				+0.5
1,173,164	+				+0.0
1,173,165	-				+0.6
1,173,165	-				-1.5
1,173,165	-				+0.0
1,173,165	-				-2.1
1,173,165	-				+0.8
1,173,165	-				+0.9
1,173,165	-				-0.1
1,173,165	-				+0.2
1,173,165	-				+0.1
1,173,165	-				-0.1
1,173,165	-				-0.0
1,173,165	-				-0.1
1,173,165	-				-0.1
1,173,165	-				-0.3
1,173,165	-				+1.5
1,173,165	-				-0.2
1,173,165	-				+1.6
1,173,165	-				-0.1
1,173,165	-				-0.5
1,173,165	-				+1.4
1,173,165	-				+0.6
1,173,165	-				+0.1
1,173,165	-				+0.1
1,173,165	-				-0.7
1,173,165	-				-0.5
1,173,165	-				-0.5
1,173,165	-				+1.3
1,173,165	-				-0.7
1,173,165	-				+0.2
1,173,165	-				+1.0
1,173,165	-				+1.6
1,173,165	-				+0.5
1,173,165	-				-0.0
1,173,165	-				-0.0
1,173,165	-				+0.3
1,173,165	-				+0.4
1,173,165	-				-1.7
1,173,178	+				-0.3
1,173,178	+				+0.1
1,173,178	+				+0.0
1,173,178	+				+0.1
1,173,178	+				-0.1
1,173,178	+				-0.7
1,173,178	+				-1.8
1,173,178	+				-2.2
1,173,178	+				+0.3
1,173,178	+				-1.4
1,173,178	+				-0.5
1,173,178	+				-0.1
1,173,178	+				+0.9
1,173,178	+				+0.3
1,173,178	+				-1.0
1,173,178	+				+0.5
1,173,178	+				-2.1
1,173,178	+				+0.3
1,173,178	+				+0.4
1,173,178	+				+0.5
1,173,179	-				-0.4
1,173,179	-				+0.5
1,173,179	-				-0.9
1,173,179	-				-0.4
1,173,179	-				+0.9
1,173,179	-				+0.3
1,173,179	-				-0.0
1,173,179	-				+0.6
1,173,179	-				-0.9
1,173,179	-				+0.1
1,173,179	-				+1.5
1,173,179	-				+0.1
1,173,179	-				-1.3
1,173,179	-				+0.2
1,173,179	-				-0.1
1,173,179	-				-1.3
1,173,179	-				-0.6
1,173,179	-				+0.2
1,173,179	-				+1.3
1,173,179	-				-0.0
1,173,179	-				-0.9
1,173,179	-				+0.3
1,173,179	-				-1.8
1,173,180	+				+0.4
1,173,180	+				-0.3
1,173,180	+				+0.0
1,173,190	+				+0.4
1,173,191	-				-0.3
1,173,197	+				-0.7
1,173,197	+				+0.0
1,173,197	+				+0.3
1,173,197	+				-1.0
1,173,197	+				+0.1
1,173,197	+				+1.7
1,173,198	-				+0.4
1,173,198	-				+0.2
1,173,198	-				+1.6
1,173,200	+				+1.3
1,173,200	+				-1.1
1,173,200	+				-0.4
1,173,200	+				-0.5
1,173,201	-				-0.1
1,173,201	-				+0.0
1,173,201	-				+0.6
1,173,311	+				+0.6
1,173,311	+				+2.3
1,173,311	+				+0.5
1,173,311	+				-0.3
1,173,311	+				+0.3
1,173,311	+				-0.2
1,173,311	+				+0.8
1,173,311	+				-0.5
1,173,311	+				-0.2
1,173,311	+				-1.1
1,173,311	+				-0.7
1,173,311	+				-1.1
1,173,312	-				+0.6
1,173,312	-				-1.7
1,173,312	-				-1.4
1,173,312	-				-0.5
1,173,312	-				+1.1
1,173,312	-				-0.5
1,173,312	-				+0.7
1,173,312	-				-0.3
1,173,312	-				-0.0
1,173,312	-				-0.7
1,173,312	-				-0.5
1,173,312	-				+0.1
1,173,312	-				+0.5
1,173,312	-				+0.7
1,173,312	-				+0.6
1,173,312	-				-0.2
1,173,312	-				-1.7
1,173,318	+				-1.2
1,173,318	+				+1.6
1,173,318	+				+0.1
1,173,318	+				+0.6
1,173,318	+				-0.0
1,173,318	+				+0.5
1,173,318	+				+0.6
1,173,318	+				-0.3
1,173,318	+				-0.5
1,173,318	+				-0.9
1,173,318	+				+0.2
1,173,318	+				+0.2
1,173,318	+				+1.3
1,173,318	+				-1.0
1,173,319	-				-0.5
1,173,319	-				-0.6
1,173,319	-				-0.2
1,173,319	-				+1.1
1,173,319	-				-1.0
1,173,319	-				-1.6
1,173,319	-				-0.4
1,173,319	-				-0.2
1,173,319	-				-2.4
1,173,320	+				-0.2
1,173,320	+				-0.2
1,173,320	+				-0.6
1,173,320	+				+0.6
1,173,320	+				-0.6
1,173,320	+				-0.0
1,173,320	+				-0.1
1,173,320	+				+0.3
1,173,320	+				-0.5
1,173,320	+				+0.5
1,173,320	+				-0.1
1,173,320	+				-0.9
1,173,320	+				+0.1
1,173,320	+				-1.7
1,173,320	+				-0.1
1,173,320	+				-0.1
1,173,320	+				-0.0
1,173,320	+				+0.5
1,173,320	+				+0.9
1,173,320	+				+0.5
1,173,320	+				-1.2
1,173,320	+				+0.8
1,173,320	+				+1.0
1,173,320	+				-0.5
1,173,320	+				-1.5
1,173,320	+				-0.6
1,173,320	+				-0.5
1,173,320	+				-1.1
1,173,320	+				+0.3
1,173,320	+				+0.1
1,173,320	+				+0.1
1,173,320	+				-0.1
1,173,320	+				+0.8
1,173,320	+				+0.3
1,173,320	+				-0.8
1,173,320	+				+0.1
1,173,321	-				+0.5
1,173,321	-				-1.1
1,173,321	-				+0.0
1,173,321	-				+1.8
1,173,321	-				-0.1
1,173,321	-				+0.4
1,173,321	-				-0.8
1,173,321	-				-0.6
1,173,321	-				-0.7
1,173,321	-				+0.1
1,173,321	-				+0.3
1,173,321	-				+0.5
1,173,321	-				-0.9
1,173,321	-				-0.5
1,173,321	-				-0.8
1,173,321	-				+0.6
1,173,321	-				+0.1
1,173,321	-				+0.7
1,173,321	-				+0.2
1,173,321	-				+1.7
1,173,321	-				+0.1
1,173,321	-				-1.0
1,173,321	-				-1.2
1,173,321	-				+0.7
1,173,321	-				+0.2
1,173,321	-				-1.4
1,173,321	-				-0.5
1,173,321	-				+0.6
1,173,321	-				+0.5
1,173,321	-				-2.0
1,173,321	-				+0.3
1,173,321	-				+0.4
1,173,321	-				-0.8
1,173,321	-				-1.0
1,173,321	-				+0.9
1,173,321	-				+0.9
1,173,321	-				+0.8
1,173,734	+		LRK54_RS05445	0.12	-0.2
1,173,734	+		LRK54_RS05445	0.12	-0.6
1,173,734	+		LRK54_RS05445	0.12	-0.8
1,173,734	+		LRK54_RS05445	0.12	-1.1
1,173,734	+		LRK54_RS05445	0.12	+1.0
1,173,734	+		LRK54_RS05445	0.12	-1.1
1,173,734	+		LRK54_RS05445	0.12	+0.7
1,173,734	+		LRK54_RS05445	0.12	-0.5
1,173,734	+		LRK54_RS05445	0.12	+0.0
1,173,734	+		LRK54_RS05445	0.12	-0.2
1,173,734	+		LRK54_RS05445	0.12	+0.4
1,173,734	+		LRK54_RS05445	0.12	-0.1
1,173,734	+		LRK54_RS05445	0.12	+0.5
1,173,734	+		LRK54_RS05445	0.12	+0.1
1,173,734	+		LRK54_RS05445	0.12	+0.1
1,173,734	+		LRK54_RS05445	0.12	-0.5
1,173,735	-		LRK54_RS05445	0.12	-1.4
1,173,735	-		LRK54_RS05445	0.12	-0.3
1,173,735	-		LRK54_RS05445	0.12	-1.0
1,173,735	-		LRK54_RS05445	0.12	+0.7
1,173,735	-		LRK54_RS05445	0.12	-0.6
1,173,735	-		LRK54_RS05445	0.12	-0.1
1,173,735	-		LRK54_RS05445	0.12	-0.3
1,173,735	-		LRK54_RS05445	0.12	-0.3
1,173,735	-		LRK54_RS05445	0.12	-0.3
1,173,785	+		LRK54_RS05445	0.14	-0.2
1,173,785	+		LRK54_RS05445	0.14	+0.1
1,173,785	+		LRK54_RS05445	0.14	-0.7
1,173,785	+		LRK54_RS05445	0.14	+0.8
1,173,786	-		LRK54_RS05445	0.14	-0.9
1,173,786	-		LRK54_RS05445	0.14	+0.6
1,173,869	+		LRK54_RS05445	0.17	-0.8
1,173,869	+		LRK54_RS05445	0.17	+0.7
1,173,869	+		LRK54_RS05445	0.17	+1.3
1,173,869	+		LRK54_RS05445	0.17	+0.9
1,173,869	+		LRK54_RS05445	0.17	-1.2
1,173,869	+		LRK54_RS05445	0.17	-0.2
1,173,869	+		LRK54_RS05445	0.17	+0.4
1,173,869	+		LRK54_RS05445	0.17	-0.2
1,173,869	+		LRK54_RS05445	0.17	+0.3
1,173,869	+		LRK54_RS05445	0.17	+0.3
1,173,869	+		LRK54_RS05445	0.17	-0.1
1,173,869	+		LRK54_RS05445	0.17	-0.3
1,173,869	+		LRK54_RS05445	0.17	-1.3
1,173,869	+		LRK54_RS05445	0.17	-1.4
1,173,869	+		LRK54_RS05445	0.17	-0.2
1,173,869	+		LRK54_RS05445	0.17	+1.0
1,173,869	+		LRK54_RS05445	0.17	-0.5
1,173,870	-		LRK54_RS05445	0.17	-0.3
1,173,870	-		LRK54_RS05445	0.17	-1.4
1,173,870	-		LRK54_RS05445	0.17	-1.5
1,173,870	-		LRK54_RS05445	0.17	-1.3
1,173,870	-		LRK54_RS05445	0.17	-0.9
1,173,870	-		LRK54_RS05445	0.17	-1.2
1,173,870	-		LRK54_RS05445	0.17	-1.1
1,173,870	-		LRK54_RS05445	0.17	-1.3
1,173,870	-		LRK54_RS05445	0.17	-0.9
1,173,870	-		LRK54_RS05445	0.17	-0.6
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