Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05365

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
1,153,030	+		LRK54_RS05355	0.66	+1.9
1,153,030	+		LRK54_RS05355	0.66	-1.4
1,153,030	+		LRK54_RS05355	0.66	-1.2
1,153,030	+		LRK54_RS05355	0.66	-0.7
1,153,031	-		LRK54_RS05355	0.66	-0.0
1,153,351	+		LRK54_RS05355	0.89	-0.5
1,153,351	+		LRK54_RS05355	0.89	-0.8
1,153,351	+		LRK54_RS05355	0.89	-1.6
1,153,351	+		LRK54_RS05355	0.89	-0.3
1,153,351	+		LRK54_RS05355	0.89	+0.7
1,153,351	+		LRK54_RS05355	0.89	-0.1
1,153,351	+		LRK54_RS05355	0.89	+0.3
1,153,351	+		LRK54_RS05355	0.89	+0.2
1,153,351	+		LRK54_RS05355	0.89	+0.2
1,153,351	+		LRK54_RS05355	0.89	-0.2
1,153,351	+		LRK54_RS05355	0.89	+1.0
1,153,351	+		LRK54_RS05355	0.89	-0.0
1,153,351	+		LRK54_RS05355	0.89	+0.1
1,153,351	+		LRK54_RS05355	0.89	+0.2
1,153,351	+		LRK54_RS05355	0.89	+1.5
1,153,352	-		LRK54_RS05355	0.89	-1.0
1,153,352	-		LRK54_RS05355	0.89	-1.2
1,153,352	-		LRK54_RS05355	0.89	+1.1
1,153,352	-		LRK54_RS05355	0.89	-0.1
1,153,352	-		LRK54_RS05355	0.89	+0.4
1,153,352	-		LRK54_RS05355	0.89	-2.3
1,153,352	-		LRK54_RS05355	0.89	+1.3
1,153,352	-		LRK54_RS05355	0.89	+1.3
1,153,352	-		LRK54_RS05355	0.89	+1.2
1,153,352	-		LRK54_RS05355	0.89	+0.5
1,153,379	-				+0.2
1,153,379	-				+0.2
1,153,379	-				+1.2
1,153,379	-				-1.0
1,153,379	-				-0.1
1,153,379	-				+0.9
1,153,512	+				-0.3
1,153,512	+				-0.1
1,153,512	+				-0.4
1,153,512	+				+0.1
1,153,512	+				+0.1
1,153,513	-				-1.6
1,153,513	-				+0.2
1,153,513	-				-0.0
1,153,513	-				-0.6
1,153,513	-				+0.1
1,153,513	-				-0.0
1,153,513	-				+0.7
1,153,513	-				-0.4
1,153,513	-				-0.6
1,153,513	-				+0.7
1,153,513	-				+1.7
1,153,653	+				+1.2
1,153,655	+				+0.7
1,153,655	+				-2.2
1,153,656	-				-0.2
1,153,656	-				-0.9
1,153,657	+				-0.6
1,153,657	+				-1.2
1,153,658	-				-1.0
1,153,658	-				+0.7
1,153,716	+		LRK54_RS05360	0.15	-0.7
1,153,717	-		LRK54_RS05360	0.15	-0.5
1,153,717	-		LRK54_RS05360	0.15	+1.3
1,153,717	-		LRK54_RS05360	0.15	-0.0
1,153,717	-		LRK54_RS05360	0.15	-0.7
1,153,717	-		LRK54_RS05360	0.15	-1.1
1,153,717	-		LRK54_RS05360	0.15	-0.9
1,153,717	-		LRK54_RS05360	0.15	+0.2
1,153,717	-		LRK54_RS05360	0.15	-0.3
1,153,717	-		LRK54_RS05360	0.15	+0.1
1,153,760	+		LRK54_RS05360	0.27	-0.1
1,153,760	+		LRK54_RS05360	0.27	-1.2
1,153,760	+		LRK54_RS05360	0.27	+0.1
1,153,792	+		LRK54_RS05360	0.36	+0.3
1,153,792	+		LRK54_RS05360	0.36	+0.2
1,153,792	+		LRK54_RS05360	0.36	-0.7
1,153,792	+		LRK54_RS05360	0.36	-0.0
1,153,792	+		LRK54_RS05360	0.36	-0.3
1,153,792	+		LRK54_RS05360	0.36	+0.1
1,153,793	-		LRK54_RS05360	0.36	-1.2
1,153,793	-		LRK54_RS05360	0.36	+0.7
1,153,793	-		LRK54_RS05360	0.36	+0.7
1,153,793	-		LRK54_RS05360	0.36	-0.6
1,153,793	-		LRK54_RS05360	0.36	-0.4
1,153,905	+		LRK54_RS05360	0.66	-0.2
1,153,906	-		LRK54_RS05360	0.67	+1.1
1,153,942	+		LRK54_RS05360	0.77	+1.7
1,153,942	+		LRK54_RS05360	0.77	-1.1
1,153,942	+		LRK54_RS05360	0.77	-0.7
1,153,942	+		LRK54_RS05360	0.77	+1.4
1,153,943	-		LRK54_RS05360	0.77	-0.9
1,153,943	-		LRK54_RS05360	0.77	-0.3
1,153,943	-		LRK54_RS05360	0.77	+0.3
1,153,947	+		LRK54_RS05360	0.78	+0.4
1,153,947	+		LRK54_RS05360	0.78	-0.2
1,153,948	-		LRK54_RS05360	0.78	-0.4
1,153,948	-		LRK54_RS05360	0.78	+0.6
1,153,948	-		LRK54_RS05360	0.78	-1.7
1,154,005	+				-0.3
1,154,005	+				-0.3
1,154,005	+				-1.3
1,154,006	-				-0.8
1,154,006	-				-0.4
1,154,291	+		LRK54_RS05365	0.76	+0.1
1,154,291	+		LRK54_RS05365	0.76	+1.1
1,154,292	-		LRK54_RS05365	0.76	+0.3
1,154,292	-		LRK54_RS05365	0.76	+2.1
1,154,292	-		LRK54_RS05365	0.76	-0.4
1,154,324	-		LRK54_RS05365	0.85	+0.0
1,154,406	-				+0.3
1,154,511	-				-0.1
1,154,514	+				+0.9
1,154,514	+				-0.9
1,154,514	+				+1.7
1,154,514	+				+0.5
1,154,514	+				-0.6
1,154,514	+				-0.3
1,154,515	-				+1.5
1,154,515	-				-0.2
1,154,515	-				-0.4
1,154,515	-				-1.1
1,154,515	-				+0.3
1,154,515	-				-0.5
1,154,515	-				-1.0
1,154,517	+				+1.9
1,154,517	+				+0.1
1,154,518	-				-0.8
1,154,534	+		LRK54_RS05370	0.10	-0.7
1,154,535	-		LRK54_RS05370	0.10	+1.4
1,154,535	-		LRK54_RS05370	0.10	+0.3
1,154,535	-		LRK54_RS05370	0.10	-0.3
1,154,583	+		LRK54_RS05370	0.17	-0.7
1,154,583	+		LRK54_RS05370	0.17	-0.4
1,154,583	+		LRK54_RS05370	0.17	+1.3
1,154,583	+		LRK54_RS05370	0.17	+0.6
1,154,583	+		LRK54_RS05370	0.17	-1.0
1,154,583	+		LRK54_RS05370	0.17	-0.2
1,154,584	-		LRK54_RS05370	0.17	-2.3
1,154,584	-		LRK54_RS05370	0.17	-0.8
1,154,701	+		LRK54_RS05370	0.34	-0.0
1,154,701	+		LRK54_RS05370	0.34	+0.9
1,154,714	+		LRK54_RS05370	0.36	-1.0
1,154,714	+		LRK54_RS05370	0.36	-0.6
1,154,714	+		LRK54_RS05370	0.36	-0.7
1,154,714	+		LRK54_RS05370	0.36	+1.2
1,154,715	-		LRK54_RS05370	0.36	+0.3
1,154,715	-		LRK54_RS05370	0.36	-0.6
1,154,715	-		LRK54_RS05370	0.36	+0.3
1,154,715	-		LRK54_RS05370	0.36	+1.0
1,154,715	-		LRK54_RS05370	0.36	-0.5
1,154,715	-		LRK54_RS05370	0.36	+0.9
1,154,715	-		LRK54_RS05370	0.36	-0.6
1,154,715	-		LRK54_RS05370	0.36	-0.2
1,154,715	-		LRK54_RS05370	0.36	+0.1
1,154,827	+		LRK54_RS05370	0.52	-0.5
1,154,862	+		LRK54_RS05370	0.57	-0.1
1,154,863	-		LRK54_RS05370	0.57	+0.5
1,154,863	-		LRK54_RS05370	0.57	+0.9
1,154,863	-		LRK54_RS05370	0.57	-1.5
1,154,879	+		LRK54_RS05370	0.60	+0.0
1,154,879	+		LRK54_RS05370	0.60	-0.5
1,154,879	+		LRK54_RS05370	0.60	-0.4
1,154,879	+		LRK54_RS05370	0.60	+1.0
1,154,879	+		LRK54_RS05370	0.60	-1.5
1,154,880	-		LRK54_RS05370	0.60	+0.4
1,154,880	-		LRK54_RS05370	0.60	-0.2
1,154,930	+		LRK54_RS05370	0.67	-0.6
1,154,931	-		LRK54_RS05370	0.67	-1.7
1,154,946	+		LRK54_RS05370	0.69	-0.4
1,154,947	-		LRK54_RS05370	0.69	-0.6
1,155,013	+		LRK54_RS05370	0.79	-0.8
1,155,013	+		LRK54_RS05370	0.79	+0.0
1,155,013	+		LRK54_RS05370	0.79	-0.1
1,155,014	-		LRK54_RS05370	0.79	-1.7
1,155,014	-		LRK54_RS05370	0.79	-0.1
1,155,062	-		LRK54_RS05370	0.86	-0.5
1,155,110	+				+1.0
1,155,110	+				+0.2
1,155,111	-				+0.6
1,155,111	-				-1.2
1,155,148	+				+2.6
1,155,149	-				+0.6
1,155,149	-				-1.8
1,155,180	+				+0.4
1,155,180	+				+0.1
1,155,180	+				-2.3
1,155,180	+				-1.3
1,155,181	-				-0.9
1,155,181	-				+0.0
1,155,211	-				-0.7
1,155,216	+				-0.6
1,155,216	+				-0.1
1,155,216	+				-0.2
1,155,216	+				-0.3
1,155,216	+				-0.3
1,155,216	+				-0.1
1,155,216	+				+0.4
1,155,216	+				-0.0
1,155,216	+				-0.0
1,155,216	+				+0.6
1,155,216	+				-0.2
1,155,216	+				+1.3
1,155,216	+				+0.7
1,155,217	-				+0.8
1,155,217	-				-0.3
1,155,217	-				+0.2
1,155,217	-				-0.4
1,155,217	-				+0.0
1,155,286	+				-1.5
1,155,286	+				-0.2
1,155,286	+				+0.5