Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05325

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
1,143,253	+				-1.4
1,143,253	+				-0.9
1,143,254	-				+0.7
1,143,254	-				-0.8
1,143,286	+				-1.6
1,143,286	+				+1.3
1,143,286	+				-1.1
1,143,286	+				-1.2
1,143,286	+				-1.0
1,143,286	+				-0.5
1,143,286	+				-0.3
1,143,332	+				-0.5
1,143,332	+				-1.2
1,143,332	+				-0.1
1,143,332	+				+2.3
1,143,332	+				+0.1
1,143,332	+				-0.4
1,143,332	+				-0.2
1,143,333	-				+0.8
1,143,418	+				+0.2
1,143,589	+		LRK54_RS05320	0.22	+1.8
1,143,589	+		LRK54_RS05320	0.22	-0.4
1,143,589	+		LRK54_RS05320	0.22	-0.4
1,143,589	+		LRK54_RS05320	0.22	-0.3
1,143,589	+		LRK54_RS05320	0.22	-0.1
1,143,589	+		LRK54_RS05320	0.22	+0.1
1,143,589	+		LRK54_RS05320	0.22	-0.3
1,143,589	+		LRK54_RS05320	0.22	-0.3
1,143,589	+		LRK54_RS05320	0.22	-1.0
1,143,589	+		LRK54_RS05320	0.22	+1.1
1,143,589	+		LRK54_RS05320	0.22	+0.0
1,143,589	+		LRK54_RS05320	0.22	-0.9
1,143,589	+		LRK54_RS05320	0.22	-0.9
1,143,589	+		LRK54_RS05320	0.22	+1.3
1,143,590	-		LRK54_RS05320	0.22	-0.4
1,143,590	-		LRK54_RS05320	0.22	-0.2
1,143,590	-		LRK54_RS05320	0.22	-1.5
1,143,590	-		LRK54_RS05320	0.22	-0.9
1,143,590	-		LRK54_RS05320	0.22	-2.2
1,143,590	-		LRK54_RS05320	0.22	+0.0
1,143,590	-		LRK54_RS05320	0.22	-0.3
1,143,590	-		LRK54_RS05320	0.22	-0.9
1,143,590	-		LRK54_RS05320	0.22	+1.0
1,143,590	-		LRK54_RS05320	0.22	+0.0
1,143,590	-		LRK54_RS05320	0.22	+2.9
1,143,590	-		LRK54_RS05320	0.22	+0.4
1,143,590	-		LRK54_RS05320	0.22	-0.5
1,143,590	-		LRK54_RS05320	0.22	+0.1
1,143,590	-		LRK54_RS05320	0.22	-0.0
1,143,590	-		LRK54_RS05320	0.22	-0.2
1,143,685	+		LRK54_RS05320	0.35	-0.6
1,143,685	+		LRK54_RS05320	0.35	+1.6
1,143,685	+		LRK54_RS05320	0.35	+0.7
1,143,685	+		LRK54_RS05320	0.35	+0.7
1,143,685	+		LRK54_RS05320	0.35	+0.1
1,143,685	+		LRK54_RS05320	0.35	+0.0
1,143,686	-		LRK54_RS05320	0.35	-0.2
1,143,686	-		LRK54_RS05320	0.35	-0.7
1,143,700	+		LRK54_RS05320	0.37	-0.5
1,143,700	+		LRK54_RS05320	0.37	+0.7
1,143,700	+		LRK54_RS05320	0.37	-0.4
1,143,700	+		LRK54_RS05320	0.37	-0.5
1,143,700	+		LRK54_RS05320	0.37	+0.0
1,143,700	+		LRK54_RS05320	0.37	+1.2
1,143,700	+		LRK54_RS05320	0.37	+0.9
1,143,700	+		LRK54_RS05320	0.37	+0.7
1,143,700	+		LRK54_RS05320	0.37	+0.6
1,143,701	-		LRK54_RS05320	0.37	+0.1
1,143,701	-		LRK54_RS05320	0.37	-0.7
1,143,701	-		LRK54_RS05320	0.37	+0.9
1,143,701	-		LRK54_RS05320	0.37	-1.5
1,143,701	-		LRK54_RS05320	0.37	-0.4
1,143,701	-		LRK54_RS05320	0.37	+0.2
1,143,928	+		LRK54_RS05320	0.69	+1.0
1,143,928	+		LRK54_RS05320	0.69	-0.4
1,143,929	-		LRK54_RS05320	0.69	+0.5
1,143,929	-		LRK54_RS05320	0.69	+0.2
1,144,130	+				-0.9
1,144,130	+				+0.9
1,144,130	+				+1.3
1,144,130	+				-1.2
1,144,131	-				-0.7
1,144,131	-				+0.7
1,144,131	-				-0.3
1,144,131	-				+0.5
1,144,184	+				-0.1
1,144,184	+				+0.5
1,144,184	+				+0.1
1,144,184	+				-1.4
1,144,184	+				+0.7
1,144,185	-				-1.5
1,144,185	-				-0.3
1,144,185	-				-0.4
1,144,185	-				+0.5
1,144,185	-				+0.5
1,144,208	+				+0.3
1,144,209	-				-0.2
1,144,409	+		LRK54_RS05325	0.45	-0.5
1,144,409	+		LRK54_RS05325	0.45	-0.1
1,144,409	+		LRK54_RS05325	0.45	-1.1
1,144,409	+		LRK54_RS05325	0.45	+0.2
1,144,409	+		LRK54_RS05325	0.45	+0.6
1,144,409	+		LRK54_RS05325	0.45	+0.1
1,144,409	+		LRK54_RS05325	0.45	+0.3
1,144,410	-		LRK54_RS05325	0.46	-0.3
1,144,410	-		LRK54_RS05325	0.46	-0.4
1,144,410	-		LRK54_RS05325	0.46	-0.8
1,144,410	-		LRK54_RS05325	0.46	-0.8
1,144,410	-		LRK54_RS05325	0.46	+1.0
1,144,410	-		LRK54_RS05325	0.46	-0.6
1,144,410	-		LRK54_RS05325	0.46	-0.1
1,144,410	-		LRK54_RS05325	0.46	-0.2
1,144,410	-		LRK54_RS05325	0.46	+0.4
1,144,520	+		LRK54_RS05325	0.76	-1.1
1,144,520	+		LRK54_RS05325	0.76	+0.5
1,144,520	+		LRK54_RS05325	0.76	+0.7
1,144,520	+		LRK54_RS05325	0.76	-0.0
1,144,520	+		LRK54_RS05325	0.76	-0.6
1,144,520	+		LRK54_RS05325	0.76	-0.1
1,144,520	+		LRK54_RS05325	0.76	+0.8
1,144,520	+		LRK54_RS05325	0.76	+0.1
1,144,521	-		LRK54_RS05325	0.76	-0.0
1,144,521	-		LRK54_RS05325	0.76	+1.0
1,144,521	-		LRK54_RS05325	0.76	+0.1
1,144,850	-		LRK54_RS05330	0.35	-0.4
1,144,897	+		LRK54_RS05330	0.42	-1.1
1,144,897	+		LRK54_RS05330	0.42	-1.2
1,144,897	+		LRK54_RS05330	0.42	+0.2
1,144,897	+		LRK54_RS05330	0.42	-0.4
1,144,897	+		LRK54_RS05330	0.42	+2.0
1,144,897	+		LRK54_RS05330	0.42	-0.9
1,144,897	+		LRK54_RS05330	0.42	-2.2
1,144,897	+		LRK54_RS05330	0.42	-1.9
1,144,897	+		LRK54_RS05330	0.42	+1.1
1,144,897	+		LRK54_RS05330	0.42	-0.0
1,144,897	+		LRK54_RS05330	0.42	-0.1
1,144,897	+		LRK54_RS05330	0.42	+0.5
1,144,897	+		LRK54_RS05330	0.42	-0.3
1,144,897	+		LRK54_RS05330	0.42	-1.7
1,144,897	+		LRK54_RS05330	0.42	+0.6
1,144,897	+		LRK54_RS05330	0.42	-0.4
1,144,898	-		LRK54_RS05330	0.42	-0.9
1,144,898	-		LRK54_RS05330	0.42	-0.5
1,144,898	-		LRK54_RS05330	0.42	+1.5
1,144,898	-		LRK54_RS05330	0.42	-0.6
1,144,898	-		LRK54_RS05330	0.42	-1.9
1,144,898	-		LRK54_RS05330	0.42	-0.3
1,144,898	-		LRK54_RS05330	0.42	-0.0
1,144,898	-		LRK54_RS05330	0.42	+0.7
1,144,898	-		LRK54_RS05330	0.42	-0.1
1,145,065	+		LRK54_RS05330	0.67	-0.4
1,145,065	+		LRK54_RS05330	0.67	-0.2
1,145,065	+		LRK54_RS05330	0.67	+0.7
1,145,065	+		LRK54_RS05330	0.67	+0.3
1,145,066	-		LRK54_RS05330	0.67	+0.8
1,145,066	-		LRK54_RS05330	0.67	-0.8
1,145,213	+		LRK54_RS05330	0.89	-0.7
1,145,295	+				+0.3
1,145,296	-				-0.4
1,145,533	+		LRK54_RS05335	0.50	-0.8
1,145,533	+		LRK54_RS05335	0.50	-0.0
1,145,533	+		LRK54_RS05335	0.50	-0.8
1,145,533	+		LRK54_RS05335	0.50	+0.1
1,145,533	+		LRK54_RS05335	0.50	-1.1
1,145,534	-		LRK54_RS05335	0.50	+2.0
1,145,534	-		LRK54_RS05335	0.50	+0.5
1,145,534	-		LRK54_RS05335	0.50	-1.1
1,145,534	-		LRK54_RS05335	0.50	+0.3
1,145,534	-		LRK54_RS05335	0.50	-0.9
1,145,534	-		LRK54_RS05335	0.50	+0.3
1,145,534	-		LRK54_RS05335	0.50	-0.1
1,145,534	-		LRK54_RS05335	0.50	-0.9
1,145,573	+		LRK54_RS05335	0.58	+0.3
1,145,573	+		LRK54_RS05335	0.58	+0.6
1,145,573	+		LRK54_RS05335	0.58	+0.7
1,145,573	+		LRK54_RS05335	0.58	-2.0
1,145,573	+		LRK54_RS05335	0.58	-0.4
1,145,573	+		LRK54_RS05335	0.58	-0.1
1,145,574	-		LRK54_RS05335	0.58	-0.6
1,145,574	-		LRK54_RS05335	0.58	-0.7
1,145,574	-		LRK54_RS05335	0.58	-0.1
1,145,574	-		LRK54_RS05335	0.58	-0.6
1,145,574	-		LRK54_RS05335	0.58	-1.6
1,145,574	-		LRK54_RS05335	0.58	+0.0
1,145,574	-		LRK54_RS05335	0.58	-0.1
1,145,601	+		LRK54_RS05335	0.63	+0.3
1,145,601	+		LRK54_RS05335	0.63	+0.0
1,145,601	+		LRK54_RS05335	0.63	+0.0
1,145,601	+		LRK54_RS05335	0.63	-0.6
1,145,601	+		LRK54_RS05335	0.63	-0.9
1,145,601	+		LRK54_RS05335	0.63	-0.3
1,145,601	+		LRK54_RS05335	0.63	-0.3
1,145,602	-		LRK54_RS05335	0.64	+0.2
1,145,602	-		LRK54_RS05335	0.64	+0.1
1,145,602	-		LRK54_RS05335	0.64	-1.0
1,145,602	-		LRK54_RS05335	0.64	+2.0
1,145,602	-		LRK54_RS05335	0.64	-0.8