Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05200

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
1,115,078	+		LRK54_RS05190	0.79	+1.2
1,115,079	-		LRK54_RS05190	0.79	+0.7
1,115,087	+		LRK54_RS05190	0.80	-0.4
1,115,096	+		LRK54_RS05190	0.81	-0.7
1,115,096	+		LRK54_RS05190	0.81	-1.5
1,115,097	-		LRK54_RS05190	0.81	+0.0
1,115,097	-		LRK54_RS05190	0.81	-0.7
1,115,097	-		LRK54_RS05190	0.81	+0.3
1,115,097	-		LRK54_RS05190	0.81	+1.5
1,115,097	-		LRK54_RS05190	0.81	-0.2
1,115,132	+		LRK54_RS05190	0.85	-0.0
1,115,132	+		LRK54_RS05190	0.85	-0.4
1,115,132	+		LRK54_RS05190	0.85	-1.3
1,115,133	-		LRK54_RS05190	0.85	+1.0
1,115,133	-		LRK54_RS05190	0.85	+0.2
1,115,133	-		LRK54_RS05190	0.85	+0.1
1,115,133	-		LRK54_RS05190	0.85	-0.1
1,115,133	-		LRK54_RS05190	0.85	-0.4
1,115,133	-		LRK54_RS05190	0.85	-0.3
1,115,133	-		LRK54_RS05190	0.85	-0.9
1,115,133	-		LRK54_RS05190	0.85	+0.1
1,115,309	+				+0.7
1,115,309	+				+0.1
1,115,309	+				-1.4
1,115,352	+				-0.3
1,115,352	+				-0.1
1,115,352	+				-0.6
1,115,352	+				-0.4
1,115,352	+				+0.2
1,115,352	+				-0.0
1,115,352	+				+0.2
1,115,352	+				-0.7
1,115,352	+				+0.1
1,115,352	+				-0.5
1,115,353	-				-1.9
1,115,353	-				-0.7
1,115,353	-				+1.6
1,115,353	-				-0.6
1,115,353	-				+0.9
1,115,369	+				-0.5
1,115,369	+				-0.7
1,115,369	+				+0.9
1,115,369	+				-0.7
1,115,370	-				-2.3
1,115,370	-				-0.1
1,115,445	+		LRK54_RS05195	0.15	-0.1
1,115,445	+		LRK54_RS05195	0.15	+1.3
1,115,446	-		LRK54_RS05195	0.16	+1.1
1,115,446	-		LRK54_RS05195	0.16	-0.5
1,115,446	-		LRK54_RS05195	0.16	-0.9
1,115,446	-		LRK54_RS05195	0.16	-0.4
1,115,608	-		LRK54_RS05195	0.43	+0.0
1,115,784	+		LRK54_RS05195	0.73	-1.4
1,115,784	+		LRK54_RS05195	0.73	-2.2
1,115,785	-		LRK54_RS05195	0.74	+1.8
1,115,882	+				-1.0
1,115,883	-				+0.7
1,116,464	+		LRK54_RS05200	0.83	-1.3
1,116,464	+		LRK54_RS05200	0.83	-0.4
1,116,464	+		LRK54_RS05200	0.83	-3.0
1,116,465	-		LRK54_RS05200	0.83	+0.3
1,116,466	+		LRK54_RS05200	0.83	-0.8
1,116,466	+		LRK54_RS05200	0.83	-2.4
1,116,467	-		LRK54_RS05200	0.83	-0.3
1,116,474	+		LRK54_RS05200	0.85	-1.9
1,116,475	-		LRK54_RS05200	0.85	+0.5
1,116,475	-		LRK54_RS05200	0.85	+0.3
1,116,587	+				+0.4
1,116,587	+				-0.3
1,116,587	+				+1.5
1,116,587	+				+0.9
1,116,587	+				+0.9
1,116,587	+				-1.6
1,116,587	+				-0.0
1,116,587	+				+0.7
1,116,587	+				+0.3
1,116,587	+				-0.4
1,116,587	+				+0.5
1,116,587	+				+1.1
1,116,588	-				-0.1
1,116,588	-				-0.8
1,116,588	-				-0.2
1,116,588	-				+0.4
1,116,588	-				-0.1
1,116,588	-				-0.1
1,116,588	-				-0.3
1,116,778	+		LRK54_RS05205	0.16	+0.1
1,116,778	+		LRK54_RS05205	0.16	+0.6
1,116,778	+		LRK54_RS05205	0.16	-1.4
1,116,778	+		LRK54_RS05205	0.16	+0.2
1,116,778	+		LRK54_RS05205	0.16	-0.4
1,116,778	+		LRK54_RS05205	0.16	-0.0
1,116,779	-		LRK54_RS05205	0.16	+0.6
1,116,779	-		LRK54_RS05205	0.16	+0.7
1,116,779	-		LRK54_RS05205	0.16	+0.7
1,116,779	-		LRK54_RS05205	0.16	+2.2
1,116,779	-		LRK54_RS05205	0.16	-1.3
1,116,779	-		LRK54_RS05205	0.16	+2.3
1,116,779	-		LRK54_RS05205	0.16	-0.6
1,116,779	-		LRK54_RS05205	0.16	+1.1
1,116,779	-		LRK54_RS05205	0.16	-0.5
1,116,779	-		LRK54_RS05205	0.16	-0.9
1,116,779	-		LRK54_RS05205	0.16	+0.7
1,116,779	-		LRK54_RS05205	0.16	+0.6
1,116,779	-		LRK54_RS05205	0.16	-0.9
1,116,779	-		LRK54_RS05205	0.16	-0.3
1,116,796	+		LRK54_RS05205	0.17	-1.0
1,116,796	+		LRK54_RS05205	0.17	+0.6
1,116,796	+		LRK54_RS05205	0.17	-0.5
1,116,796	+		LRK54_RS05205	0.17	+1.5
1,116,796	+		LRK54_RS05205	0.17	-0.4
1,116,796	+		LRK54_RS05205	0.17	-0.3
1,116,796	+		LRK54_RS05205	0.17	-0.5
1,116,796	+		LRK54_RS05205	0.17	-1.2
1,116,796	+		LRK54_RS05205	0.17	-0.5
1,116,796	+		LRK54_RS05205	0.17	-2.6
1,116,796	+		LRK54_RS05205	0.17	+1.3
1,116,796	+		LRK54_RS05205	0.17	+1.2
1,116,797	-		LRK54_RS05205	0.18	-0.1
1,116,797	-		LRK54_RS05205	0.18	-0.3
1,116,797	-		LRK54_RS05205	0.18	+0.7
1,116,797	-		LRK54_RS05205	0.18	-0.2
1,116,797	-		LRK54_RS05205	0.18	+0.1
1,116,797	-		LRK54_RS05205	0.18	-0.2
1,116,797	-		LRK54_RS05205	0.18	+1.7
1,116,797	-		LRK54_RS05205	0.18	+0.1
1,116,797	-		LRK54_RS05205	0.18	+0.3
1,116,797	-		LRK54_RS05205	0.18	+1.7
1,116,797	-		LRK54_RS05205	0.18	-1.3
1,116,847	+		LRK54_RS05205	0.21	-0.2
1,116,847	+		LRK54_RS05205	0.21	+0.2
1,116,847	+		LRK54_RS05205	0.21	-0.7
1,116,847	+		LRK54_RS05205	0.21	+2.9
1,116,847	+		LRK54_RS05205	0.21	-0.0
1,116,847	+		LRK54_RS05205	0.21	-0.6
1,116,847	+		LRK54_RS05205	0.21	-0.9
1,116,848	-		LRK54_RS05205	0.21	-0.3
1,116,848	-		LRK54_RS05205	0.21	-1.9
1,116,848	-		LRK54_RS05205	0.21	+0.3
1,116,848	-		LRK54_RS05205	0.21	-0.8
1,116,848	-		LRK54_RS05205	0.21	-0.5
1,116,848	-		LRK54_RS05205	0.21	-0.1
1,116,848	-		LRK54_RS05205	0.21	+1.4
1,116,849	-		LRK54_RS05205	0.22	+1.2
1,116,895	+		LRK54_RS05205	0.25	+1.6
1,116,895	+		LRK54_RS05205	0.25	-0.3
1,116,895	+		LRK54_RS05205	0.25	-0.3
1,116,895	+		LRK54_RS05205	0.25	-0.3
1,116,895	+		LRK54_RS05205	0.25	-1.1
1,116,895	+		LRK54_RS05205	0.25	-0.0
1,116,895	+		LRK54_RS05205	0.25	+0.2
1,116,895	+		LRK54_RS05205	0.25	-0.4
1,116,896	-		LRK54_RS05205	0.25	-1.9
1,116,896	-		LRK54_RS05205	0.25	-0.3
1,116,896	-		LRK54_RS05205	0.25	+0.1
1,116,896	-		LRK54_RS05205	0.25	+0.7
1,116,896	-		LRK54_RS05205	0.25	+0.3
1,116,896	-		LRK54_RS05205	0.25	+0.1
1,116,896	-		LRK54_RS05205	0.25	-0.2
1,116,896	-		LRK54_RS05205	0.25	-3.1
1,116,896	-		LRK54_RS05205	0.25	+2.2
1,116,896	-		LRK54_RS05205	0.25	+0.6
1,116,997	+		LRK54_RS05205	0.33	+0.7
1,116,997	+		LRK54_RS05205	0.33	+0.3
1,116,997	+		LRK54_RS05205	0.33	+3.7
1,116,997	+		LRK54_RS05205	0.33	+0.1
1,116,997	+		LRK54_RS05205	0.33	+0.5
1,116,997	+		LRK54_RS05205	0.33	+1.1
1,116,997	+		LRK54_RS05205	0.33	-0.3
1,116,997	+		LRK54_RS05205	0.33	+0.1
1,116,998	-		LRK54_RS05205	0.33	+1.0
1,116,998	-		LRK54_RS05205	0.33	+0.7
1,116,998	-		LRK54_RS05205	0.33	-0.3
1,116,998	-		LRK54_RS05205	0.33	-0.1
1,116,998	-		LRK54_RS05205	0.33	-0.2
1,116,998	-		LRK54_RS05205	0.33	-0.7
1,116,998	-		LRK54_RS05205	0.33	+0.2
1,117,006	+		LRK54_RS05205	0.34	+0.6
1,117,006	+		LRK54_RS05205	0.34	+0.4
1,117,039	+		LRK54_RS05205	0.36	+0.2
1,117,039	+		LRK54_RS05205	0.36	+0.3
1,117,039	+		LRK54_RS05205	0.36	+0.3
1,117,039	+		LRK54_RS05205	0.36	-0.4
1,117,039	+		LRK54_RS05205	0.36	+0.2
1,117,039	+		LRK54_RS05205	0.36	-1.0
1,117,039	+		LRK54_RS05205	0.36	+1.0
1,117,039	+		LRK54_RS05205	0.36	-0.2
1,117,039	+		LRK54_RS05205	0.36	+0.7
1,117,039	+		LRK54_RS05205	0.36	-1.3
1,117,039	+		LRK54_RS05205	0.36	-0.0
1,117,039	+		LRK54_RS05205	0.36	+2.7
1,117,039	+		LRK54_RS05205	0.36	+2.9
1,117,040	-		LRK54_RS05205	0.36	-0.1
1,117,040	-		LRK54_RS05205	0.36	+0.2
1,117,040	-		LRK54_RS05205	0.36	-0.1
1,117,040	-		LRK54_RS05205	0.36	-1.6
1,117,040	-		LRK54_RS05205	0.36	+0.3
1,117,040	-		LRK54_RS05205	0.36	-0.1
1,117,040	-		LRK54_RS05205	0.36	-0.0
1,117,040	-		LRK54_RS05205	0.36	+0.6
1,117,040	-		LRK54_RS05205	0.36	-0.2
1,117,040	-		LRK54_RS05205	0.36	-0.7
1,117,040	-		LRK54_RS05205	0.36	-1.6
1,117,040	-		LRK54_RS05205	0.36	-0.1
1,117,051	+		LRK54_RS05205	0.37	-0.5
1,117,051	+		LRK54_RS05205	0.37	+0.7
1,117,051	+		LRK54_RS05205	0.37	+0.2
1,117,051	+		LRK54_RS05205	0.37	-0.6
1,117,052	-		LRK54_RS05205	0.37	+0.1
1,117,052	-		LRK54_RS05205	0.37	-0.7
1,117,330	+		LRK54_RS05205	0.58	-0.9
1,117,330	+		LRK54_RS05205	0.58	+0.1
1,117,330	+		LRK54_RS05205	0.58	-1.0
1,117,330	+		LRK54_RS05205	0.58	-0.2
1,117,330	+		LRK54_RS05205	0.58	-0.4
1,117,330	+		LRK54_RS05205	0.58	-0.3
1,117,330	+		LRK54_RS05205	0.58	+2.1
1,117,330	+		LRK54_RS05205	0.58	+1.1
1,117,330	+		LRK54_RS05205	0.58	+0.5
1,117,330	+		LRK54_RS05205	0.58	-0.5
1,117,330	+		LRK54_RS05205	0.58	-0.4
1,117,330	+		LRK54_RS05205	0.58	-0.8
1,117,330	+		LRK54_RS05205	0.58	-0.1
1,117,330	+		LRK54_RS05205	0.58	-0.9
1,117,330	+		LRK54_RS05205	0.58	+1.3
1,117,330	+		LRK54_RS05205	0.58	-0.8
1,117,330	+		LRK54_RS05205	0.58	-0.7
1,117,330	+		LRK54_RS05205	0.58	-0.3
1,117,330	+		LRK54_RS05205	0.58	-0.6
1,117,330	+		LRK54_RS05205	0.58	+0.0
1,117,330	+		LRK54_RS05205	0.58	-0.6
1,117,330	+		LRK54_RS05205	0.58	-0.3
1,117,330	+		LRK54_RS05205	0.58	+1.0
1,117,330	+		LRK54_RS05205	0.58	-0.7
1,117,330	+		LRK54_RS05205	0.58	+0.2
1,117,330	+		LRK54_RS05205	0.58	+0.7
1,117,331	-		LRK54_RS05205	0.58	+0.3
1,117,331	-		LRK54_RS05205	0.58	+0.1
1,117,331	-		LRK54_RS05205	0.58	-0.1
1,117,331	-		LRK54_RS05205	0.58	-0.2
1,117,331	-		LRK54_RS05205	0.58	-1.1
1,117,331	-		LRK54_RS05205	0.58	+0.1
1,117,331	-		LRK54_RS05205	0.58	+0.6
1,117,331	-		LRK54_RS05205	0.58	-0.5
1,117,331	-		LRK54_RS05205	0.58	-0.3
1,117,331	-		LRK54_RS05205	0.58	+0.5
1,117,331	-		LRK54_RS05205	0.58	+0.4
1,117,331	-		LRK54_RS05205	0.58	+0.4
1,117,331	-		LRK54_RS05205	0.58	+0.1
1,117,331	-		LRK54_RS05205	0.58	+0.3
1,117,331	-		LRK54_RS05205	0.58	-0.0
1,117,331	-		LRK54_RS05205	0.58	+0.2
1,117,331	-		LRK54_RS05205	0.58	-1.1
1,117,331	-		LRK54_RS05205	0.58	-1.1
1,117,331	-		LRK54_RS05205	0.58	+1.2
1,117,331	-		LRK54_RS05205	0.58	-1.2
1,117,331	-		LRK54_RS05205	0.58	+1.0
1,117,331	-		LRK54_RS05205	0.58	+1.2
1,117,331	-		LRK54_RS05205	0.58	+1.0
1,117,331	-		LRK54_RS05205	0.58	+1.4
1,117,331	-		LRK54_RS05205	0.58	-0.4
1,117,331	-		LRK54_RS05205	0.58	-0.9