Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05110

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
1,096,668	+		LRK54_RS05105	0.23	-0.9
1,096,668	+		LRK54_RS05105	0.23	-0.4
1,096,668	+		LRK54_RS05105	0.23	+0.3
1,096,668	+		LRK54_RS05105	0.23	+0.3
1,096,668	+		LRK54_RS05105	0.23	+0.4
1,096,668	+		LRK54_RS05105	0.23	-0.5
1,096,669	-		LRK54_RS05105	0.23	+0.5
1,096,719	+		LRK54_RS05105	0.28	-1.1
1,096,719	+		LRK54_RS05105	0.28	-1.4
1,096,719	+		LRK54_RS05105	0.28	+0.2
1,096,720	-		LRK54_RS05105	0.28	-1.4
1,096,720	-		LRK54_RS05105	0.28	-0.4
1,096,720	-		LRK54_RS05105	0.28	-0.2
1,096,720	-		LRK54_RS05105	0.28	-0.2
1,096,788	+		LRK54_RS05105	0.35	+0.2
1,096,788	+		LRK54_RS05105	0.35	-2.1
1,096,788	+		LRK54_RS05105	0.35	-0.9
1,096,788	+		LRK54_RS05105	0.35	+0.4
1,096,788	+		LRK54_RS05105	0.35	-0.3
1,096,788	+		LRK54_RS05105	0.35	+0.5
1,096,788	+		LRK54_RS05105	0.35	-0.5
1,096,788	+		LRK54_RS05105	0.35	-0.1
1,096,789	-		LRK54_RS05105	0.35	-0.3
1,096,789	-		LRK54_RS05105	0.35	-0.0
1,096,789	-		LRK54_RS05105	0.35	-0.5
1,096,789	-		LRK54_RS05105	0.35	-1.0
1,096,789	-		LRK54_RS05105	0.35	-0.8
1,096,789	-		LRK54_RS05105	0.35	+0.2
1,096,789	-		LRK54_RS05105	0.35	-0.7
1,096,789	-		LRK54_RS05105	0.35	+0.5
1,096,789	-		LRK54_RS05105	0.35	-1.6
1,096,947	+		LRK54_RS05105	0.52	+0.2
1,096,948	-		LRK54_RS05105	0.52	+0.0
1,097,055	+		LRK54_RS05105	0.63	+0.6
1,097,055	+		LRK54_RS05105	0.63	-0.7
1,097,056	-		LRK54_RS05105	0.63	+0.1
1,097,142	+		LRK54_RS05105	0.72	-0.2
1,097,143	-		LRK54_RS05105	0.72	+0.9
1,097,143	-		LRK54_RS05105	0.72	-1.1
1,097,143	-		LRK54_RS05105	0.72	+1.6
1,097,241	+		LRK54_RS05105	0.82	-1.0
1,097,241	+		LRK54_RS05105	0.82	-0.7
1,097,241	+		LRK54_RS05105	0.82	-1.6
1,097,241	+		LRK54_RS05105	0.82	-0.5
1,097,241	+		LRK54_RS05105	0.82	-0.9
1,097,241	+		LRK54_RS05105	0.82	-0.7
1,097,242	-		LRK54_RS05105	0.82	-0.6
1,097,242	-		LRK54_RS05105	0.82	-0.4
1,097,242	-		LRK54_RS05105	0.82	-1.1
1,097,242	-		LRK54_RS05105	0.82	-0.0
1,097,314	-		LRK54_RS05105	0.90	-0.3
1,097,388	+				+0.4
1,097,388	+				+1.5
1,097,388	+				+0.0
1,097,388	+				-0.6
1,097,388	+				-0.1
1,097,388	+				-0.5
1,097,389	-				+0.1
1,097,389	-				+0.7
1,097,389	-				+2.5
1,097,389	-				-0.4
1,097,389	-				+0.3
1,097,439	+				-0.6
1,097,439	+				-0.4
1,097,439	+				+1.0
1,098,144	+		LRK54_RS05110	0.67	+0.1
1,098,469	-				+1.8
1,098,469	-				+0.5
1,098,554	+				+0.0
1,098,554	+				-0.9
1,098,554	+				+0.5
1,098,554	+				-0.6
1,098,554	+				-0.3
1,098,554	+				-0.3
1,098,554	+				-1.0
1,098,554	+				+0.5
1,098,555	-				-0.3
1,098,555	-				+0.5
1,098,555	-				-0.3
1,098,555	-				-0.0
1,098,555	-				+0.5
1,098,555	-				-0.7
1,098,555	-				+0.1
1,098,741	+		LRK54_RS05115	0.20	+0.3
1,098,742	-		LRK54_RS05115	0.20	-0.2
1,098,742	-		LRK54_RS05115	0.20	-1.3
1,098,742	-		LRK54_RS05115	0.20	+1.2
1,098,792	-		LRK54_RS05115	0.25	+2.0
1,099,238	+		LRK54_RS05115	0.64	-0.1
1,099,238	+		LRK54_RS05115	0.64	-0.6
1,099,238	+		LRK54_RS05115	0.64	-0.9
1,099,239	-		LRK54_RS05115	0.64	-1.2
1,099,239	-		LRK54_RS05115	0.64	-0.4
1,099,239	-		LRK54_RS05115	0.64	-0.0
1,099,239	-		LRK54_RS05115	0.64	-0.6
1,099,239	-		LRK54_RS05115	0.64	-0.0
1,099,239	-		LRK54_RS05115	0.64	-0.7
1,099,239	-		LRK54_RS05115	0.64	+0.1
1,099,239	-		LRK54_RS05115	0.64	+1.1
1,099,463	+		LRK54_RS05115	0.84	-0.9
1,099,463	+		LRK54_RS05115	0.84	+0.1
1,099,463	+		LRK54_RS05115	0.84	-2.0
1,099,463	+		LRK54_RS05115	0.84	-0.5
1,099,464	-		LRK54_RS05115	0.84	+2.0
1,099,464	-		LRK54_RS05115	0.84	+0.7