Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05020

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
1,071,606	+		LRK54_RS05015	0.67	+1.3
1,071,606	+		LRK54_RS05015	0.67	+1.0
1,071,606	+		LRK54_RS05015	0.67	-0.1
1,071,606	+		LRK54_RS05015	0.67	-0.2
1,071,606	+		LRK54_RS05015	0.67	+0.6
1,071,606	+		LRK54_RS05015	0.67	-0.7
1,071,606	+		LRK54_RS05015	0.67	+0.1
1,071,606	+		LRK54_RS05015	0.67	-0.3
1,071,607	-		LRK54_RS05015	0.67	-0.1
1,071,607	-		LRK54_RS05015	0.67	-1.1
1,071,607	-		LRK54_RS05015	0.67	-0.5
1,071,607	-		LRK54_RS05015	0.67	-0.9
1,071,607	-		LRK54_RS05015	0.67	+0.3
1,071,607	-		LRK54_RS05015	0.67	-0.5
1,071,627	+		LRK54_RS05015	0.68	+0.4
1,071,628	-		LRK54_RS05015	0.68	-0.1
1,071,663	+		LRK54_RS05015	0.69	-0.7
1,071,663	+		LRK54_RS05015	0.69	+0.3
1,071,664	-		LRK54_RS05015	0.69	+0.4
1,071,664	-		LRK54_RS05015	0.69	+0.7
1,071,792	+		LRK54_RS05015	0.75	+0.2
1,071,792	+		LRK54_RS05015	0.75	+0.1
1,071,792	+		LRK54_RS05015	0.75	+0.4
1,071,792	+		LRK54_RS05015	0.75	-1.1
1,071,792	+		LRK54_RS05015	0.75	-0.2
1,071,792	+		LRK54_RS05015	0.75	-0.2
1,071,792	+		LRK54_RS05015	0.75	-1.3
1,071,792	+		LRK54_RS05015	0.75	-0.0
1,071,792	+		LRK54_RS05015	0.75	+0.2
1,071,792	+		LRK54_RS05015	0.75	-0.4
1,071,792	+		LRK54_RS05015	0.75	+0.2
1,071,792	+		LRK54_RS05015	0.75	+0.3
1,071,792	+		LRK54_RS05015	0.75	-0.7
1,071,792	+		LRK54_RS05015	0.75	-0.9
1,071,792	+		LRK54_RS05015	0.75	-0.6
1,071,793	-		LRK54_RS05015	0.75	-0.1
1,071,793	-		LRK54_RS05015	0.75	+0.0
1,071,793	-		LRK54_RS05015	0.75	-0.9
1,071,793	-		LRK54_RS05015	0.75	-0.7
1,071,793	-		LRK54_RS05015	0.75	-0.5
1,071,793	-		LRK54_RS05015	0.75	+2.3
1,071,793	-		LRK54_RS05015	0.75	-0.3
1,071,793	-		LRK54_RS05015	0.75	-0.6
1,071,793	-		LRK54_RS05015	0.75	+0.4
1,071,793	-		LRK54_RS05015	0.75	+0.7
1,071,894	+		LRK54_RS05015	0.79	-0.1
1,071,894	+		LRK54_RS05015	0.79	-0.3
1,071,894	+		LRK54_RS05015	0.79	-0.1
1,071,894	+		LRK54_RS05015	0.79	+0.6
1,071,894	+		LRK54_RS05015	0.79	-1.0
1,071,895	-		LRK54_RS05015	0.79	-0.7
1,071,895	-		LRK54_RS05015	0.79	-1.3
1,071,895	-		LRK54_RS05015	0.79	-1.6
1,071,895	-		LRK54_RS05015	0.79	-0.5
1,071,895	-		LRK54_RS05015	0.79	+0.5
1,072,134	+				+1.1
1,072,135	-				-1.4
1,072,177	-				+0.3
1,072,224	+				+1.7
1,072,225	-				-0.6
1,072,293	+				-0.9
1,072,293	+				-0.2
1,072,293	+				-0.0
1,072,294	-				-0.4
1,072,294	-				-0.4
1,072,294	-				-0.4
1,072,294	-				+0.4
1,072,666	+		LRK54_RS05020	0.10	+1.0
1,072,666	+		LRK54_RS05020	0.10	-0.0
1,072,666	+		LRK54_RS05020	0.10	+0.1
1,072,666	+		LRK54_RS05020	0.10	+2.8
1,072,666	+		LRK54_RS05020	0.10	-0.3
1,072,666	+		LRK54_RS05020	0.10	+0.3
1,072,666	+		LRK54_RS05020	0.10	+0.2
1,072,666	+		LRK54_RS05020	0.10	+0.3
1,072,666	+		LRK54_RS05020	0.10	+0.5
1,072,666	+		LRK54_RS05020	0.10	-0.0
1,072,666	+		LRK54_RS05020	0.10	+0.7
1,072,666	+		LRK54_RS05020	0.10	+0.2
1,072,666	+		LRK54_RS05020	0.10	+0.7
1,072,666	+		LRK54_RS05020	0.10	+0.9
1,072,666	+		LRK54_RS05020	0.10	-0.1
1,072,667	-		LRK54_RS05020	0.10	+0.1
1,072,667	-		LRK54_RS05020	0.10	-0.1
1,072,667	-		LRK54_RS05020	0.10	+0.9
1,072,667	-		LRK54_RS05020	0.10	+0.4
1,072,667	-		LRK54_RS05020	0.10	+0.7
1,072,667	-		LRK54_RS05020	0.10	+1.2
1,072,667	-		LRK54_RS05020	0.10	+2.0
1,072,667	-		LRK54_RS05020	0.10	-0.8
1,072,667	-		LRK54_RS05020	0.10	+1.1
1,072,667	-		LRK54_RS05020	0.10	+1.2
1,072,667	-		LRK54_RS05020	0.10	-0.2
1,072,667	-		LRK54_RS05020	0.10	-0.0
1,072,667	-		LRK54_RS05020	0.10	-0.9
1,072,667	-		LRK54_RS05020	0.10	+0.9
1,072,667	-		LRK54_RS05020	0.10	+0.9
1,072,667	-		LRK54_RS05020	0.10	-0.9
1,072,667	-		LRK54_RS05020	0.10	-0.3
1,072,667	-		LRK54_RS05020	0.10	+0.9
1,072,667	-		LRK54_RS05020	0.10	-1.1
1,072,667	-		LRK54_RS05020	0.10	+3.6
1,072,667	-		LRK54_RS05020	0.10	-0.7
1,072,667	-		LRK54_RS05020	0.10	+0.1
1,072,775	-		LRK54_RS05020	0.18	-0.3
1,072,775	-		LRK54_RS05020	0.18	+0.2
1,072,775	-		LRK54_RS05020	0.18	+0.2
1,072,868	+		LRK54_RS05020	0.25	-0.2
1,072,868	+		LRK54_RS05020	0.25	-0.1
1,072,868	+		LRK54_RS05020	0.25	+0.4
1,072,869	-		LRK54_RS05020	0.25	+1.0
1,072,869	-		LRK54_RS05020	0.25	-0.6
1,072,869	-		LRK54_RS05020	0.25	-1.0
1,073,020	+		LRK54_RS05020	0.36	+0.6
1,073,020	+		LRK54_RS05020	0.36	-0.3
1,073,020	+		LRK54_RS05020	0.36	-0.3
1,073,020	+		LRK54_RS05020	0.36	+0.3
1,073,020	+		LRK54_RS05020	0.36	-0.4
1,073,020	+		LRK54_RS05020	0.36	-0.9
1,073,020	+		LRK54_RS05020	0.36	+0.1
1,073,020	+		LRK54_RS05020	0.36	+0.4
1,073,020	+		LRK54_RS05020	0.36	-0.1
1,073,020	+		LRK54_RS05020	0.36	+0.3
1,073,020	+		LRK54_RS05020	0.36	-0.5
1,073,020	+		LRK54_RS05020	0.36	+0.2
1,073,020	+		LRK54_RS05020	0.36	+0.8
1,073,020	+		LRK54_RS05020	0.36	-0.4
1,073,021	-		LRK54_RS05020	0.36	-0.2
1,073,021	-		LRK54_RS05020	0.36	-0.5
1,073,021	-		LRK54_RS05020	0.36	-0.1
1,073,021	-		LRK54_RS05020	0.36	+0.8
1,073,021	-		LRK54_RS05020	0.36	+0.7
1,073,021	-		LRK54_RS05020	0.36	+0.2
1,073,021	-		LRK54_RS05020	0.36	+0.3
1,073,021	-		LRK54_RS05020	0.36	+0.7
1,073,021	-		LRK54_RS05020	0.36	-0.1
1,073,021	-		LRK54_RS05020	0.36	-0.1
1,073,021	-		LRK54_RS05020	0.36	-1.8
1,073,021	-		LRK54_RS05020	0.36	+0.5
1,073,021	-		LRK54_RS05020	0.36	+0.3
1,073,021	-		LRK54_RS05020	0.36	+0.2
1,073,021	-		LRK54_RS05020	0.36	+0.3
1,073,422	+		LRK54_RS05020	0.65	-0.6
1,073,422	+		LRK54_RS05020	0.65	-0.3
1,073,422	+		LRK54_RS05020	0.65	+0.4
1,073,422	+		LRK54_RS05020	0.65	-0.7
1,073,422	+		LRK54_RS05020	0.65	+2.3
1,073,422	+		LRK54_RS05020	0.65	-0.1
1,073,422	+		LRK54_RS05020	0.65	-0.1
1,073,423	-		LRK54_RS05020	0.65	+2.0
1,073,423	-		LRK54_RS05020	0.65	+0.0
1,073,423	-		LRK54_RS05020	0.65	-0.4
1,073,423	-		LRK54_RS05020	0.65	+1.2
1,073,578	+		LRK54_RS05020	0.76	+0.2
1,073,578	+		LRK54_RS05020	0.76	+0.5
1,073,578	+		LRK54_RS05020	0.76	-0.5
1,073,579	-		LRK54_RS05020	0.76	+0.5
1,073,579	-		LRK54_RS05020	0.76	+0.6
1,073,579	-		LRK54_RS05020	0.76	+0.5
1,073,579	-		LRK54_RS05020	0.76	+0.3
1,073,579	-		LRK54_RS05020	0.76	+0.1
1,073,579	-		LRK54_RS05020	0.76	+0.9
1,073,579	-		LRK54_RS05020	0.76	-0.1
1,073,579	-		LRK54_RS05020	0.76	-0.8
1,073,579	-		LRK54_RS05020	0.76	+0.2
1,073,776	+				+0.2
1,073,776	+				+0.1
1,073,776	+				+0.4
1,073,776	+				-1.6
1,073,776	+				-1.0
1,073,776	+				+0.1
1,073,776	+				+0.5
1,073,776	+				+0.4
1,073,776	+				-0.1
1,073,776	+				+0.3
1,073,776	+				+0.3
1,073,776	+				-0.1
1,073,776	+				+0.3
1,073,776	+				+0.7
1,073,776	+				+1.5
1,073,776	+				-0.7
1,073,776	+				-0.6
1,073,777	-				-0.2
1,073,777	-				+1.3
1,073,777	-				-0.1
1,073,777	-				+0.2
1,073,777	-				-0.8
1,073,777	-				+0.4
1,073,777	-				-0.1
1,073,777	-				+0.7
1,073,777	-				+0.8
1,073,777	-				+0.5
1,073,777	-				+1.2
1,073,777	-				-0.1
1,073,777	-				-0.3
1,073,777	-				+1.1
1,073,830	+				+0.5
1,073,831	-				+0.5
1,073,831	-				-0.3
1,073,831	-				+0.5
1,073,831	-				+1.5
1,073,884	+				+0.9
1,073,884	+				+1.3
1,073,884	+				+0.7
1,073,884	+				-0.0
1,073,885	-				+0.1
1,073,885	-				-0.4
1,073,885	-				+0.1
1,073,885	-				+0.1
1,073,885	-				+0.8
1,074,007	+				-0.7
1,074,008	-				+0.2
1,074,008	-				-0.5
1,074,008	-				-1.1
1,074,008	-				+0.3
1,074,008	-				-2.0
1,074,059	+		LRK54_RS05025	0.11	-1.7
1,074,059	+		LRK54_RS05025	0.11	+1.3
1,074,059	+		LRK54_RS05025	0.11	-0.5
1,074,060	-		LRK54_RS05025	0.11	-0.8
1,074,060	-		LRK54_RS05025	0.11	-0.4
1,074,060	-		LRK54_RS05025	0.11	-0.7
1,074,060	-		LRK54_RS05025	0.11	-0.2
1,074,060	-		LRK54_RS05025	0.11	+1.4
1,074,060	-		LRK54_RS05025	0.11	-1.6
1,074,060	-		LRK54_RS05025	0.11	-0.3
1,074,060	-		LRK54_RS05025	0.11	-0.2
1,074,060	-		LRK54_RS05025	0.11	+0.5
1,074,060	-		LRK54_RS05025	0.11	+0.3
1,074,060	-		LRK54_RS05025	0.11	-0.6
1,074,152	+		LRK54_RS05025	0.18	-0.8
1,074,152	+		LRK54_RS05025	0.18	+0.2
1,074,152	+		LRK54_RS05025	0.18	-0.8
1,074,152	+		LRK54_RS05025	0.18	+0.6
1,074,152	+		LRK54_RS05025	0.18	+0.7
1,074,152	+		LRK54_RS05025	0.18	-0.0
1,074,153	-		LRK54_RS05025	0.18	-0.9
1,074,320	+		LRK54_RS05025	0.31	-0.2
1,074,320	+		LRK54_RS05025	0.31	-0.9
1,074,320	+		LRK54_RS05025	0.31	+0.7
1,074,320	+		LRK54_RS05025	0.31	-0.4
1,074,321	-		LRK54_RS05025	0.31	+0.3
1,074,321	-		LRK54_RS05025	0.31	-0.7
1,074,321	-		LRK54_RS05025	0.31	+0.9
1,074,321	-		LRK54_RS05025	0.31	-1.6
1,074,321	-		LRK54_RS05025	0.31	-1.3
1,074,321	-		LRK54_RS05025	0.31	+1.3
1,074,321	-		LRK54_RS05025	0.31	-0.1
1,074,321	-		LRK54_RS05025	0.31	-2.7
1,074,321	-		LRK54_RS05025	0.31	-0.4
1,074,321	-		LRK54_RS05025	0.31	-0.8
1,074,321	-		LRK54_RS05025	0.31	+0.6
1,074,321	-		LRK54_RS05025	0.31	+1.0
1,074,458	+		LRK54_RS05025	0.42	+1.2
1,074,458	+		LRK54_RS05025	0.42	-0.9
1,074,458	+		LRK54_RS05025	0.42	-0.3
1,074,458	+		LRK54_RS05025	0.42	-0.5
1,074,458	+		LRK54_RS05025	0.42	-0.1
1,074,458	+		LRK54_RS05025	0.42	+1.3
1,074,459	-		LRK54_RS05025	0.42	+0.7
1,074,459	-		LRK54_RS05025	0.42	+0.9
1,074,459	-		LRK54_RS05025	0.42	-0.5
1,074,459	-		LRK54_RS05025	0.42	+1.0
1,074,459	-		LRK54_RS05025	0.42	-1.8
1,074,459	-		LRK54_RS05025	0.42	-0.5
1,074,459	-		LRK54_RS05025	0.42	+1.1
1,074,459	-		LRK54_RS05025	0.42	-0.0
1,074,459	-		LRK54_RS05025	0.42	-0.0
1,074,459	-		LRK54_RS05025	0.42	+1.7
1,074,476	+		LRK54_RS05025	0.44	+2.0
1,074,476	+		LRK54_RS05025	0.44	+1.1
1,074,476	+		LRK54_RS05025	0.44	+0.6
1,074,477	-		LRK54_RS05025	0.44	-0.1
1,074,477	-		LRK54_RS05025	0.44	-1.0
1,074,503	+		LRK54_RS05025	0.46	-0.8
1,074,504	-		LRK54_RS05025	0.46	+0.2
1,074,504	-		LRK54_RS05025	0.46	+0.3
1,074,560	+		LRK54_RS05025	0.50	+0.2
1,074,560	+		LRK54_RS05025	0.50	-0.1
1,074,560	+		LRK54_RS05025	0.50	-1.5
1,074,560	+		LRK54_RS05025	0.50	-0.3
1,074,560	+		LRK54_RS05025	0.50	-0.7
1,074,620	+		LRK54_RS05025	0.55	+0.3
1,074,620	+		LRK54_RS05025	0.55	-1.3
1,074,620	+		LRK54_RS05025	0.55	-0.2
1,074,620	+		LRK54_RS05025	0.55	+0.3
1,074,620	+		LRK54_RS05025	0.55	+0.7
1,074,620	+		LRK54_RS05025	0.55	+0.5
1,074,621	-		LRK54_RS05025	0.55	-0.2
1,074,621	-		LRK54_RS05025	0.55	+0.5
1,074,621	-		LRK54_RS05025	0.55	+0.4
1,074,621	-		LRK54_RS05025	0.55	-0.7
1,074,621	-		LRK54_RS05025	0.55	-0.5
1,074,621	-		LRK54_RS05025	0.55	-0.4
1,074,621	-		LRK54_RS05025	0.55	+0.6
1,074,803	+		LRK54_RS05025	0.70	+0.1
1,074,803	+		LRK54_RS05025	0.70	+0.5
1,074,803	+		LRK54_RS05025	0.70	-0.8
1,074,803	+		LRK54_RS05025	0.70	+0.7
1,074,803	+		LRK54_RS05025	0.70	+1.1
1,074,803	+		LRK54_RS05025	0.70	-0.3
1,074,804	-		LRK54_RS05025	0.70	-0.6
1,074,804	-		LRK54_RS05025	0.70	+1.1
1,074,804	-		LRK54_RS05025	0.70	-0.7
1,074,804	-		LRK54_RS05025	0.70	-0.4
1,074,884	+		LRK54_RS05025	0.76	-0.2
1,074,885	-		LRK54_RS05025	0.76	-0.1