Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04990

Experiment: R2A with FW104 filtrate 0.5 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with FW104 filtrate 0.5 X
1,059,787	-				-0.0
1,059,918	-				-0.9
1,059,918	-				+1.4
1,059,919	-				+0.3
1,059,928	-				+1.0
1,059,928	-				+1.1
1,059,928	-				+0.4
1,060,034	+				-0.1
1,060,034	+				+2.1
1,060,034	+				-0.4
1,060,034	+				+1.5
1,060,034	+				+0.4
1,060,034	+				+1.1
1,060,034	+				+1.3
1,060,034	+				+0.7
1,060,034	+				+0.3
1,060,034	+				-0.1
1,060,034	+				-0.8
1,060,034	+				+0.0
1,060,034	+				+1.1
1,060,034	+				+0.1
1,060,035	-				-0.6
1,060,035	-				-1.0
1,060,035	-				-0.1
1,060,035	-				-0.7
1,060,035	-				-2.6
1,060,035	-				-1.3
1,060,035	-				-0.3
1,060,035	-				+2.6
1,060,035	-				-0.3
1,060,035	-				+0.5
1,060,035	-				-0.4
1,060,035	-				+0.1
1,060,035	-				+1.1
1,060,035	-				-0.7
1,060,035	-				-0.0
1,060,035	-				-1.5
1,060,035	-				-0.7
1,060,035	-				+0.9
1,060,035	-				+0.2
1,060,035	-				-0.3
1,060,035	-				-0.3
1,060,036	+				+0.3
1,060,036	+				+0.5
1,060,036	+				+1.6
1,060,036	+				-0.0
1,060,036	+				+0.1
1,060,036	+				+1.0
1,060,036	+				+0.3
1,060,036	+				+0.9
1,060,036	+				-0.0
1,060,036	+				+0.2
1,060,036	+				-1.4
1,060,036	+				+0.7
1,060,036	+				-1.2
1,060,037	-				+0.1
1,060,037	-				+0.9
1,060,037	-				-0.3
1,060,037	-				-1.3
1,060,037	-				-0.2
1,060,037	-				-0.0
1,060,037	-				-1.0
1,060,037	-				+0.2
1,060,037	-				-0.2
1,060,037	-				-0.7
1,060,037	-				+0.7
1,060,076	+				+1.1
1,060,076	+				-0.0
1,060,076	+				+0.3
1,060,076	+				+0.2
1,060,076	+				-0.7
1,060,076	+				+0.4
1,060,076	+				-1.0
1,060,076	+				-1.0
1,060,076	+				+0.3
1,060,076	+				+0.1
1,060,076	+				+0.2
1,060,076	+				-0.7
1,060,076	+				+0.0
1,060,076	+				+0.2
1,060,076	+				+1.7
1,060,076	+				+0.1
1,060,076	+				-0.9
1,060,076	+				-0.2
1,060,076	+				+0.2
1,060,076	+				+0.5
1,060,077	-				-0.9
1,060,077	-				+0.8
1,060,077	-				+1.3
1,060,077	-				+0.7
1,060,077	-				-0.9
1,060,077	-				+0.8
1,060,077	-				-0.6
1,060,077	-				+0.0
1,060,077	-				-1.5
1,060,077	-				-1.5
1,060,077	-				-0.9
1,060,077	-				-1.7
1,060,077	-				+0.9
1,060,077	-				-0.3
1,060,077	-				-0.1
1,060,077	-				+0.3
1,060,077	-				+0.3
1,060,077	-				+0.6
1,060,077	-				+0.1
1,060,077	-				-1.8
1,060,077	-				+0.2
1,060,077	-				-0.3
1,060,077	-				+1.7
1,060,089	+				-0.1
1,060,089	+				+1.7
1,060,090	-				+0.7
1,060,090	-				-0.5
1,060,090	-				-0.2
1,060,204	+				+0.2
1,060,204	+				+0.6
1,060,205	-				+0.3
1,060,205	-				-0.6
1,060,205	-				+0.2
1,060,288	+		LRK54_RS04990	0.11	+1.3
1,060,288	+		LRK54_RS04990	0.11	+0.1
1,060,288	+		LRK54_RS04990	0.11	+0.1
1,060,288	+		LRK54_RS04990	0.11	+1.1
1,060,288	+		LRK54_RS04990	0.11	+0.7
1,060,288	+		LRK54_RS04990	0.11	+2.0
1,060,288	+		LRK54_RS04990	0.11	-0.1
1,060,288	+		LRK54_RS04990	0.11	+0.8
1,060,288	+		LRK54_RS04990	0.11	+1.8
1,060,288	+		LRK54_RS04990	0.11	+1.3
1,060,288	+		LRK54_RS04990	0.11	+1.1
1,060,288	+		LRK54_RS04990	0.11	-1.1
1,060,288	+		LRK54_RS04990	0.11	+2.2
1,060,288	+		LRK54_RS04990	0.11	+0.6
1,060,288	+		LRK54_RS04990	0.11	+3.0
1,060,289	-		LRK54_RS04990	0.11	+1.1
1,060,289	-		LRK54_RS04990	0.11	-1.3
1,060,289	-		LRK54_RS04990	0.11	+0.2
1,060,289	-		LRK54_RS04990	0.11	-0.5
1,060,289	-		LRK54_RS04990	0.11	+0.4
1,060,289	-		LRK54_RS04990	0.11	+0.2
1,060,289	-		LRK54_RS04990	0.11	-0.6
1,060,289	-		LRK54_RS04990	0.11	+0.7
1,060,289	-		LRK54_RS04990	0.11	+0.7
1,060,289	-		LRK54_RS04990	0.11	-0.1
1,060,289	-		LRK54_RS04990	0.11	+0.3
1,060,289	-		LRK54_RS04990	0.11	-0.1
1,060,289	-		LRK54_RS04990	0.11	+1.0
1,060,289	-		LRK54_RS04990	0.11	-0.5
1,060,339	+		LRK54_RS04990	0.14	+1.7
1,060,339	+		LRK54_RS04990	0.14	+0.3
1,060,339	+		LRK54_RS04990	0.14	+0.2
1,060,606	+		LRK54_RS04990	0.30	-0.5
1,060,606	+		LRK54_RS04990	0.30	-0.0
1,060,606	+		LRK54_RS04990	0.30	+1.1
1,060,606	+		LRK54_RS04990	0.30	+1.1
1,060,606	+		LRK54_RS04990	0.30	+1.0
1,060,606	+		LRK54_RS04990	0.30	+0.4
1,060,607	-		LRK54_RS04990	0.31	-0.1
1,060,607	-		LRK54_RS04990	0.31	+0.7
1,060,607	-		LRK54_RS04990	0.31	-0.3
1,060,607	-		LRK54_RS04990	0.31	-2.4
1,060,607	-		LRK54_RS04990	0.31	+0.6
1,060,607	-		LRK54_RS04990	0.31	-0.1
1,060,607	-		LRK54_RS04990	0.31	+1.1
1,060,607	-		LRK54_RS04990	0.31	+0.4
1,060,607	-		LRK54_RS04990	0.31	+1.2
1,060,870	+		LRK54_RS04990	0.46	+0.9
1,060,870	+		LRK54_RS04990	0.46	+0.6
1,060,870	+		LRK54_RS04990	0.46	-0.8
1,060,870	+		LRK54_RS04990	0.46	-0.0
1,060,870	+		LRK54_RS04990	0.46	+0.4
1,060,870	+		LRK54_RS04990	0.46	+0.4
1,060,870	+		LRK54_RS04990	0.46	-0.3
1,060,870	+		LRK54_RS04990	0.46	+1.1
1,060,870	+		LRK54_RS04990	0.46	-0.1
1,060,870	+		LRK54_RS04990	0.46	-0.2
1,060,870	+		LRK54_RS04990	0.46	+1.3
1,060,870	+		LRK54_RS04990	0.46	+0.2
1,060,871	-		LRK54_RS04990	0.47	+0.1
1,060,871	-		LRK54_RS04990	0.47	+0.7
1,060,871	-		LRK54_RS04990	0.47	+0.2
1,060,871	-		LRK54_RS04990	0.47	-0.3
1,060,871	-		LRK54_RS04990	0.47	-0.4
1,060,871	-		LRK54_RS04990	0.47	-0.8
1,060,871	-		LRK54_RS04990	0.47	-0.6
1,060,871	-		LRK54_RS04990	0.47	+1.0
1,060,871	-		LRK54_RS04990	0.47	+0.7
1,060,871	-		LRK54_RS04990	0.47	+0.7
1,060,871	-		LRK54_RS04990	0.47	-0.0
1,060,871	-		LRK54_RS04990	0.47	+0.5
1,060,871	-		LRK54_RS04990	0.47	+0.3
1,060,871	-		LRK54_RS04990	0.47	-0.5
1,060,871	-		LRK54_RS04990	0.47	+1.1
1,060,871	-		LRK54_RS04990	0.47	-0.2
1,060,871	-		LRK54_RS04990	0.47	+0.3
1,060,871	-		LRK54_RS04990	0.47	-0.3
1,061,296	+		LRK54_RS04990	0.72	-0.0
1,061,296	+		LRK54_RS04990	0.72	-1.2
1,061,296	+		LRK54_RS04990	0.72	+0.7
1,061,296	+		LRK54_RS04990	0.72	-0.0
1,061,296	+		LRK54_RS04990	0.72	+0.6
1,061,296	+		LRK54_RS04990	0.72	-0.4
1,061,296	+		LRK54_RS04990	0.72	-0.5
1,061,296	+		LRK54_RS04990	0.72	+0.7
1,061,297	-		LRK54_RS04990	0.72	+0.5
1,061,297	-		LRK54_RS04990	0.72	+0.3
1,061,297	-		LRK54_RS04990	0.72	-0.1
1,061,297	-		LRK54_RS04990	0.72	+0.3
1,061,297	-		LRK54_RS04990	0.72	+0.1
1,061,297	-		LRK54_RS04990	0.72	-0.6
1,061,297	-		LRK54_RS04990	0.72	+0.7
1,061,297	-		LRK54_RS04990	0.72	+0.6
1,061,297	-		LRK54_RS04990	0.72	-0.4
1,061,297	-		LRK54_RS04990	0.72	-0.1
1,061,297	-		LRK54_RS04990	0.72	+0.5
1,061,297	-		LRK54_RS04990	0.72	-0.2
1,061,428	+		LRK54_RS04990	0.80	+1.0
1,061,566	+		LRK54_RS04990	0.89	-0.7
1,061,566	+		LRK54_RS04990	0.89	+0.9
1,061,566	+		LRK54_RS04990	0.89	-1.3
1,061,566	+		LRK54_RS04990	0.89	+0.3
1,061,566	+		LRK54_RS04990	0.89	+0.1
1,061,566	+		LRK54_RS04990	0.89	+0.5
1,061,566	+		LRK54_RS04990	0.89	-0.8
1,061,566	+		LRK54_RS04990	0.89	+0.3
1,061,566	+		LRK54_RS04990	0.89	+0.0
1,061,566	+		LRK54_RS04990	0.89	+0.5
1,061,566	+		LRK54_RS04990	0.89	-0.3
1,061,566	+		LRK54_RS04990	0.89	-0.3
1,061,566	+		LRK54_RS04990	0.89	+0.2
1,061,566	+		LRK54_RS04990	0.89	-0.2
1,061,566	+		LRK54_RS04990	0.89	+0.0
1,061,566	+		LRK54_RS04990	0.89	-0.3
1,061,566	+		LRK54_RS04990	0.89	+0.7
1,061,566	+		LRK54_RS04990	0.89	+0.6
1,061,566	+		LRK54_RS04990	0.89	-0.0
1,061,566	+		LRK54_RS04990	0.89	+1.0
1,061,566	+		LRK54_RS04990	0.89	+0.4
1,061,566	+		LRK54_RS04990	0.89	-0.7
1,061,566	+		LRK54_RS04990	0.89	+0.6
1,061,566	+		LRK54_RS04990	0.89	+0.3
1,061,566	+		LRK54_RS04990	0.89	-0.0
1,061,566	+		LRK54_RS04990	0.89	-0.2
1,061,566	+		LRK54_RS04990	0.89	-0.5
1,061,566	+		LRK54_RS04990	0.89	+1.0
1,061,566	+		LRK54_RS04990	0.89	-1.4
1,061,566	+		LRK54_RS04990	0.89	+0.4
1,061,566	+		LRK54_RS04990	0.89	+0.2
1,061,566	+		LRK54_RS04990	0.89	+0.2
1,061,566	+		LRK54_RS04990	0.89	+1.7
1,061,566	+		LRK54_RS04990	0.89	-0.2
1,061,566	+		LRK54_RS04990	0.89	+0.8
1,061,566	+		LRK54_RS04990	0.89	-0.1
1,061,566	+		LRK54_RS04990	0.89	+1.7
1,061,566	+		LRK54_RS04990	0.89	-0.4
1,061,567	-		LRK54_RS04990	0.89	+0.0
1,061,567	-		LRK54_RS04990	0.89	-0.5
1,061,567	-		LRK54_RS04990	0.89	-0.9
1,061,567	-		LRK54_RS04990	0.89	+0.6
1,061,567	-		LRK54_RS04990	0.89	+0.7
1,061,567	-		LRK54_RS04990	0.89	+0.2
1,061,567	-		LRK54_RS04990	0.89	-0.4
1,061,567	-		LRK54_RS04990	0.89	+1.1
1,061,567	-		LRK54_RS04990	0.89	+0.4
1,061,567	-		LRK54_RS04990	0.89	-0.9
1,061,567	-		LRK54_RS04990	0.89	-0.4
1,061,567	-		LRK54_RS04990	0.89	-0.3
1,061,567	-		LRK54_RS04990	0.89	+0.7
1,061,567	-		LRK54_RS04990	0.89	+0.7
1,061,567	-		LRK54_RS04990	0.89	+0.8
1,061,567	-		LRK54_RS04990	0.89	+0.1
1,061,567	-		LRK54_RS04990	0.89	-0.2
1,061,567	-		LRK54_RS04990	0.89	+0.1
1,061,567	-		LRK54_RS04990	0.89	-1.4
1,061,567	-		LRK54_RS04990	0.89	+0.7
1,061,567	-		LRK54_RS04990	0.89	+0.5
1,061,567	-		LRK54_RS04990	0.89	-0.3
1,061,567	-		LRK54_RS04990	0.89	+0.3
1,061,567	-		LRK54_RS04990	0.89	-0.0
1,061,567	-		LRK54_RS04990	0.89	+0.4
1,061,567	-		LRK54_RS04990	0.89	+0.1
1,061,567	-		LRK54_RS04990	0.89	-0.4
1,061,567	-		LRK54_RS04990	0.89	-1.0
1,061,567	-		LRK54_RS04990	0.89	+1.0
1,061,567	-		LRK54_RS04990	0.89	+0.1
1,061,567	-		LRK54_RS04990	0.89	+0.8
1,061,567	-		LRK54_RS04990	0.89	+0.3
1,061,567	-		LRK54_RS04990	0.89	-0.1
1,061,567	-		LRK54_RS04990	0.89	+0.1
1,061,567	-		LRK54_RS04990	0.89	+1.0
1,061,568	+		LRK54_RS04990	0.89	-0.4
1,061,568	+		LRK54_RS04990	0.89	+0.6
1,061,568	+		LRK54_RS04990	0.89	+0.2
1,061,568	+		LRK54_RS04990	0.89	+0.4
1,061,568	+		LRK54_RS04990	0.89	+0.8
1,061,568	+		LRK54_RS04990	0.89	+0.4
1,061,568	+		LRK54_RS04990	0.89	+0.4
1,061,568	+		LRK54_RS04990	0.89	+0.6
1,061,569	-		LRK54_RS04990	0.89	+1.1
1,061,569	-		LRK54_RS04990	0.89	-0.5
1,061,569	-		LRK54_RS04990	0.89	+1.5
1,061,569	-		LRK54_RS04990	0.89	+0.1
1,061,569	-		LRK54_RS04990	0.89	-0.3
1,061,569	-		LRK54_RS04990	0.89	+0.3
1,061,569	-		LRK54_RS04990	0.89	-0.3
1,061,569	-		LRK54_RS04990	0.89	+0.0
1,061,569	-		LRK54_RS04990	0.89	-0.1
1,061,569	-		LRK54_RS04990	0.89	+0.3
1,061,569	-		LRK54_RS04990	0.89	-1.7
1,061,569	-		LRK54_RS04990	0.89	-0.2
1,061,569	-		LRK54_RS04990	0.89	-1.0
1,061,569	-		LRK54_RS04990	0.89	+1.2
1,061,581	+		LRK54_RS04990	0.89	-0.0
1,061,581	+		LRK54_RS04990	0.89	+0.2
1,061,581	+		LRK54_RS04990	0.89	-0.0
1,061,582	-		LRK54_RS04990	0.90	+0.8
1,061,582	-		LRK54_RS04990	0.90	+0.2
1,061,583	-		LRK54_RS04990	0.90	-0.4
1,061,602	+				+1.3
1,061,602	+				-0.5
1,061,602	+				+0.7
1,061,602	+				-0.3
1,061,602	+				+0.6
1,061,602	+				-0.5
1,061,602	+				+0.0
1,061,602	+				+0.3
1,061,602	+				+0.9
1,061,603	-				-0.1
1,061,603	-				+2.5
1,061,603	-				-0.7
1,061,603	-				-0.0
1,061,603	-				+1.0
1,061,603	-				+0.3
1,061,603	-				+0.7
1,061,603	-				+0.5
1,061,603	-				-0.3
1,061,603	-				-0.5
1,061,647	+				+1.5
1,061,647	+				-2.9
1,061,647	+				-1.0
1,061,647	+				+0.6
1,061,647	+				-0.3
1,061,647	+				+0.3
1,061,647	+				-0.9
1,061,647	+				-0.5
1,061,647	+				+0.1
1,061,647	+				+0.3
1,061,647	+				+0.4
1,061,647	+				+0.0
1,061,647	+				+0.5
1,061,648	-				+0.1
1,061,648	-				-0.3
1,061,648	-				+0.2
1,061,648	-				+0.7
1,061,648	-				+0.0
1,061,648	-				+0.5
1,061,648	-				-0.1
1,061,648	-				+0.3
1,061,648	-				+0.6
1,061,648	-				-0.1
1,061,648	-				+1.7
1,061,648	-				+0.6
1,061,648	-				+1.0
1,061,648	-				+0.9
1,061,648	-				-0.9
1,061,648	-				-0.1
1,061,648	-				+0.2
1,061,752	+				-0.4
1,061,752	+				+0.4
1,061,753	-				-1.3
1,061,753	-				+2.0
1,062,448	-		LRK54_RS04995	0.68	-0.7
1,062,475	+		LRK54_RS04995	0.70	-1.1
1,062,475	+		LRK54_RS04995	0.70	-1.4
1,062,475	+		LRK54_RS04995	0.70	+0.7
1,062,475	+		LRK54_RS04995	0.70	+1.6
1,062,475	+		LRK54_RS04995	0.70	+0.1
1,062,475	+		LRK54_RS04995	0.70	-1.0
1,062,476	-		LRK54_RS04995	0.70	-0.0
1,062,476	-		LRK54_RS04995	0.70	+2.3
1,062,476	-		LRK54_RS04995	0.70	+0.7
1,062,603	+		LRK54_RS04995	0.83	-0.9
1,062,603	+		LRK54_RS04995	0.83	-1.6
1,062,604	-		LRK54_RS04995	0.83	-0.5