Experiment: R2A with FW104 filtrate 0.5 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS04930 and LRK54_RS04935 are separated by 88 nucleotides LRK54_RS04935 and LRK54_RS04940 are separated by 102 nucleotides LRK54_RS04940 and LRK54_RS04945 are separated by 291 nucleotides
LRK54_RS04930: LRK54_RS04930 - aspartate--tRNA ligase, at 1,043,854 to 1,045,626
_RS04930
LRK54_RS04935: LRK54_RS04935 - DUF3011 domain-containing protein, at 1,045,715 to 1,046,347
_RS04935
LRK54_RS04940: LRK54_RS04940 - zinc ribbon domain-containing protein, at 1,046,450 to 1,046,746
_RS04940
LRK54_RS04945: LRK54_RS04945 - TonB-dependent receptor, at 1,047,038 to 1,049,410
_RS04945
Position (kb) 1046
1047 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1045.685 kb on + strand at 1045.685 kb on + strand at 1045.686 kb on - strand at 1045.686 kb on - strand at 1045.716 kb on + strand at 1045.794 kb on + strand, within LRK54_RS04935 at 1045.794 kb on + strand, within LRK54_RS04935 at 1045.794 kb on + strand, within LRK54_RS04935 at 1045.794 kb on + strand, within LRK54_RS04935 at 1045.794 kb on + strand, within LRK54_RS04935 at 1045.794 kb on + strand, within LRK54_RS04935 at 1045.795 kb on - strand, within LRK54_RS04935 at 1045.795 kb on - strand, within LRK54_RS04935 at 1045.795 kb on - strand, within LRK54_RS04935 at 1045.878 kb on + strand, within LRK54_RS04935 at 1045.878 kb on + strand, within LRK54_RS04935 at 1045.878 kb on + strand, within LRK54_RS04935 at 1045.878 kb on + strand, within LRK54_RS04935 at 1045.878 kb on + strand, within LRK54_RS04935 at 1045.878 kb on + strand, within LRK54_RS04935 at 1045.879 kb on - strand, within LRK54_RS04935 at 1045.879 kb on - strand, within LRK54_RS04935 at 1045.879 kb on - strand, within LRK54_RS04935 at 1045.879 kb on - strand, within LRK54_RS04935 at 1045.879 kb on - strand, within LRK54_RS04935 at 1045.971 kb on + strand, within LRK54_RS04935 at 1045.971 kb on + strand, within LRK54_RS04935 at 1045.971 kb on + strand, within LRK54_RS04935 at 1045.971 kb on + strand, within LRK54_RS04935 at 1045.971 kb on + strand, within LRK54_RS04935 at 1045.972 kb on - strand, within LRK54_RS04935 at 1046.055 kb on + strand, within LRK54_RS04935 at 1046.056 kb on - strand, within LRK54_RS04935 at 1046.061 kb on + strand, within LRK54_RS04935 at 1046.061 kb on + strand, within LRK54_RS04935 at 1046.061 kb on + strand, within LRK54_RS04935 at 1046.061 kb on + strand, within LRK54_RS04935 at 1046.061 kb on + strand, within LRK54_RS04935 at 1046.061 kb on + strand, within LRK54_RS04935 at 1046.061 kb on + strand, within LRK54_RS04935 at 1046.061 kb on + strand, within LRK54_RS04935 at 1046.061 kb on + strand, within LRK54_RS04935 at 1046.061 kb on + strand, within LRK54_RS04935 at 1046.061 kb on + strand, within LRK54_RS04935 at 1046.061 kb on + strand, within LRK54_RS04935 at 1046.061 kb on + strand, within LRK54_RS04935 at 1046.062 kb on - strand, within LRK54_RS04935 at 1046.062 kb on - strand, within LRK54_RS04935 at 1046.062 kb on - strand, within LRK54_RS04935 at 1046.062 kb on - strand, within LRK54_RS04935 at 1046.062 kb on - strand, within LRK54_RS04935 at 1046.062 kb on - strand, within LRK54_RS04935 at 1046.062 kb on - strand, within LRK54_RS04935 at 1046.062 kb on - strand, within LRK54_RS04935 at 1046.062 kb on - strand, within LRK54_RS04935 at 1046.178 kb on + strand, within LRK54_RS04935 at 1046.178 kb on + strand, within LRK54_RS04935 at 1046.178 kb on + strand, within LRK54_RS04935 at 1046.178 kb on + strand, within LRK54_RS04935 at 1046.178 kb on + strand, within LRK54_RS04935 at 1046.178 kb on + strand, within LRK54_RS04935 at 1046.178 kb on + strand, within LRK54_RS04935 at 1046.178 kb on + strand, within LRK54_RS04935 at 1046.178 kb on + strand, within LRK54_RS04935 at 1046.178 kb on + strand, within LRK54_RS04935 at 1046.178 kb on + strand, within LRK54_RS04935 at 1046.178 kb on + strand, within LRK54_RS04935 at 1046.178 kb on + strand, within LRK54_RS04935 at 1046.179 kb on - strand, within LRK54_RS04935 at 1046.179 kb on - strand, within LRK54_RS04935 at 1046.179 kb on - strand, within LRK54_RS04935 at 1046.179 kb on - strand, within LRK54_RS04935 at 1046.179 kb on - strand, within LRK54_RS04935 at 1046.179 kb on - strand, within LRK54_RS04935 at 1046.179 kb on - strand, within LRK54_RS04935 at 1046.179 kb on - strand, within LRK54_RS04935 at 1046.179 kb on - strand, within LRK54_RS04935 at 1046.179 kb on - strand, within LRK54_RS04935 at 1046.179 kb on - strand, within LRK54_RS04935 at 1046.179 kb on - strand, within LRK54_RS04935 at 1046.179 kb on - strand, within LRK54_RS04935 at 1046.179 kb on - strand, within LRK54_RS04935 at 1046.179 kb on - strand, within LRK54_RS04935 at 1046.179 kb on - strand, within LRK54_RS04935 at 1046.179 kb on - strand, within LRK54_RS04935 at 1046.179 kb on - strand, within LRK54_RS04935 at 1046.190 kb on + strand, within LRK54_RS04935 at 1046.190 kb on + strand, within LRK54_RS04935 at 1046.190 kb on + strand, within LRK54_RS04935 at 1046.190 kb on + strand, within LRK54_RS04935 at 1046.217 kb on + strand, within LRK54_RS04935 at 1046.218 kb on - strand, within LRK54_RS04935 at 1046.218 kb on - strand, within LRK54_RS04935 at 1046.218 kb on - strand, within LRK54_RS04935 at 1046.406 kb on + strand at 1046.406 kb on + strand at 1046.406 kb on + strand at 1046.407 kb on - strand at 1046.407 kb on - strand at 1046.407 kb on - strand at 1046.407 kb on - strand at 1046.407 kb on - strand at 1046.586 kb on + strand, within LRK54_RS04940 at 1046.586 kb on + strand, within LRK54_RS04940 at 1046.586 kb on + strand, within LRK54_RS04940 at 1046.587 kb on - strand, within LRK54_RS04940 at 1046.736 kb on + strand at 1046.736 kb on + strand at 1046.736 kb on + strand at 1046.736 kb on + strand at 1046.736 kb on + strand at 1046.736 kb on + strand at 1046.736 kb on + strand at 1046.737 kb on - strand at 1046.737 kb on - strand at 1046.737 kb on - strand at 1046.737 kb on - strand at 1046.737 kb on - strand at 1046.821 kb on + strand at 1046.821 kb on + strand at 1046.821 kb on + strand at 1046.821 kb on + strand at 1046.821 kb on + strand at 1046.821 kb on + strand at 1046.821 kb on + strand at 1046.821 kb on + strand at 1046.821 kb on + strand at 1046.822 kb on - strand at 1046.822 kb on - strand at 1046.822 kb on - strand at 1046.856 kb on + strand at 1046.856 kb on + strand at 1046.856 kb on + strand at 1046.856 kb on + strand at 1046.856 kb on + strand at 1046.856 kb on + strand at 1046.856 kb on + strand at 1046.856 kb on + strand at 1046.856 kb on + strand at 1046.856 kb on + strand at 1046.857 kb on - strand at 1046.857 kb on - strand at 1046.857 kb on - strand at 1046.857 kb on - strand at 1046.857 kb on - strand at 1046.857 kb on - strand at 1046.857 kb on - strand at 1046.859 kb on + strand at 1046.859 kb on + strand at 1046.859 kb on + strand at 1046.860 kb on - strand at 1046.860 kb on - strand at 1046.860 kb on - strand at 1046.949 kb on + strand at 1046.950 kb on - strand at 1046.957 kb on + strand at 1046.957 kb on + strand at 1046.958 kb on + strand at 1046.958 kb on - strand at 1046.958 kb on - strand at 1046.959 kb on + strand at 1046.959 kb on + strand at 1046.959 kb on + strand at 1046.959 kb on + strand at 1046.959 kb on + strand at 1046.959 kb on + strand at 1046.959 kb on + strand at 1046.959 kb on + strand at 1046.959 kb on + strand at 1046.959 kb on + strand at 1046.959 kb on + strand at 1046.959 kb on + strand at 1046.960 kb on - strand at 1046.960 kb on - strand at 1046.960 kb on - strand at 1046.960 kb on - strand at 1046.960 kb on - strand at 1046.960 kb on - strand at 1046.960 kb on - strand at 1046.960 kb on - strand at 1046.960 kb on - strand at 1046.960 kb on - strand at 1046.965 kb on + strand at 1046.966 kb on - strand at 1046.991 kb on - strand at 1046.991 kb on - strand at 1046.991 kb on - strand at 1047.542 kb on + strand, within LRK54_RS04945 at 1047.542 kb on + strand, within LRK54_RS04945 at 1047.543 kb on - strand, within LRK54_RS04945 at 1047.543 kb on - strand, within LRK54_RS04945 at 1047.543 kb on - strand, within LRK54_RS04945 at 1047.629 kb on + strand, within LRK54_RS04945 at 1047.629 kb on + strand, within LRK54_RS04945 at 1047.629 kb on + strand, within LRK54_RS04945 at 1047.630 kb on - strand, within LRK54_RS04945 at 1047.630 kb on - strand, within LRK54_RS04945 at 1047.735 kb on - strand, within LRK54_RS04945 at 1047.735 kb on - strand, within LRK54_RS04945
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X remove 1,045,685 + -0.4 1,045,685 + +1.1 1,045,686 - +1.9 1,045,686 - -0.8 1,045,716 + -1.1 1,045,794 + LRK54_RS04935 0.12 -0.3 1,045,794 + LRK54_RS04935 0.12 -1.6 1,045,794 + LRK54_RS04935 0.12 -0.2 1,045,794 + LRK54_RS04935 0.12 -1.0 1,045,794 + LRK54_RS04935 0.12 +0.6 1,045,794 + LRK54_RS04935 0.12 -0.1 1,045,795 - LRK54_RS04935 0.13 +0.8 1,045,795 - LRK54_RS04935 0.13 -0.8 1,045,795 - LRK54_RS04935 0.13 +0.1 1,045,878 + LRK54_RS04935 0.26 -0.3 1,045,878 + LRK54_RS04935 0.26 -0.5 1,045,878 + LRK54_RS04935 0.26 +0.1 1,045,878 + LRK54_RS04935 0.26 +1.1 1,045,878 + LRK54_RS04935 0.26 -1.9 1,045,878 + LRK54_RS04935 0.26 +0.2 1,045,879 - LRK54_RS04935 0.26 -0.3 1,045,879 - LRK54_RS04935 0.26 -0.9 1,045,879 - LRK54_RS04935 0.26 -0.4 1,045,879 - LRK54_RS04935 0.26 +0.1 1,045,879 - LRK54_RS04935 0.26 -0.8 1,045,971 + LRK54_RS04935 0.40 -0.0 1,045,971 + LRK54_RS04935 0.40 -1.4 1,045,971 + LRK54_RS04935 0.40 -0.3 1,045,971 + LRK54_RS04935 0.40 -0.7 1,045,971 + LRK54_RS04935 0.40 -0.9 1,045,972 - LRK54_RS04935 0.41 -0.1 1,046,055 + LRK54_RS04935 0.54 +0.2 1,046,056 - LRK54_RS04935 0.54 -0.0 1,046,061 + LRK54_RS04935 0.55 +0.3 1,046,061 + LRK54_RS04935 0.55 -0.3 1,046,061 + LRK54_RS04935 0.55 -0.7 1,046,061 + LRK54_RS04935 0.55 +1.7 1,046,061 + LRK54_RS04935 0.55 -0.6 1,046,061 + LRK54_RS04935 0.55 -1.2 1,046,061 + LRK54_RS04935 0.55 +0.5 1,046,061 + LRK54_RS04935 0.55 -1.5 1,046,061 + LRK54_RS04935 0.55 -0.3 1,046,061 + LRK54_RS04935 0.55 -0.4 1,046,061 + LRK54_RS04935 0.55 -0.6 1,046,061 + LRK54_RS04935 0.55 -0.7 1,046,061 + LRK54_RS04935 0.55 -1.2 1,046,062 - LRK54_RS04935 0.55 +0.7 1,046,062 - LRK54_RS04935 0.55 -0.6 1,046,062 - LRK54_RS04935 0.55 -0.4 1,046,062 - LRK54_RS04935 0.55 -1.0 1,046,062 - LRK54_RS04935 0.55 +0.4 1,046,062 - LRK54_RS04935 0.55 +1.4 1,046,062 - LRK54_RS04935 0.55 -1.2 1,046,062 - LRK54_RS04935 0.55 +0.7 1,046,062 - LRK54_RS04935 0.55 -0.1 1,046,178 + LRK54_RS04935 0.73 -0.3 1,046,178 + LRK54_RS04935 0.73 -0.0 1,046,178 + LRK54_RS04935 0.73 -0.5 1,046,178 + LRK54_RS04935 0.73 -1.0 1,046,178 + LRK54_RS04935 0.73 -0.5 1,046,178 + LRK54_RS04935 0.73 +0.1 1,046,178 + LRK54_RS04935 0.73 -1.2 1,046,178 + LRK54_RS04935 0.73 -0.4 1,046,178 + LRK54_RS04935 0.73 +0.5 1,046,178 + LRK54_RS04935 0.73 -1.1 1,046,178 + LRK54_RS04935 0.73 -0.5 1,046,178 + LRK54_RS04935 0.73 +0.2 1,046,178 + LRK54_RS04935 0.73 -0.6 1,046,179 - LRK54_RS04935 0.73 -0.2 1,046,179 - LRK54_RS04935 0.73 +0.1 1,046,179 - LRK54_RS04935 0.73 -0.2 1,046,179 - LRK54_RS04935 0.73 +0.2 1,046,179 - LRK54_RS04935 0.73 +2.6 1,046,179 - LRK54_RS04935 0.73 +0.4 1,046,179 - LRK54_RS04935 0.73 -0.2 1,046,179 - LRK54_RS04935 0.73 +0.4 1,046,179 - LRK54_RS04935 0.73 +0.6 1,046,179 - LRK54_RS04935 0.73 -0.8 1,046,179 - LRK54_RS04935 0.73 -0.0 1,046,179 - LRK54_RS04935 0.73 +0.3 1,046,179 - LRK54_RS04935 0.73 -0.3 1,046,179 - LRK54_RS04935 0.73 +1.1 1,046,179 - LRK54_RS04935 0.73 -1.2 1,046,179 - LRK54_RS04935 0.73 +0.3 1,046,179 - LRK54_RS04935 0.73 +0.5 1,046,179 - LRK54_RS04935 0.73 +1.4 1,046,190 + LRK54_RS04935 0.75 +1.3 1,046,190 + LRK54_RS04935 0.75 +0.3 1,046,190 + LRK54_RS04935 0.75 -0.0 1,046,190 + LRK54_RS04935 0.75 +0.6 1,046,217 + LRK54_RS04935 0.79 +0.5 1,046,218 - LRK54_RS04935 0.79 +0.1 1,046,218 - LRK54_RS04935 0.79 -0.2 1,046,218 - LRK54_RS04935 0.79 -1.2 1,046,406 + +0.1 1,046,406 + -0.0 1,046,406 + -0.7 1,046,407 - -0.3 1,046,407 - -0.6 1,046,407 - -0.4 1,046,407 - -0.0 1,046,407 - +0.3 1,046,586 + LRK54_RS04940 0.46 +0.2 1,046,586 + LRK54_RS04940 0.46 -0.7 1,046,586 + LRK54_RS04940 0.46 +1.0 1,046,587 - LRK54_RS04940 0.46 -0.2 1,046,736 + +0.0 1,046,736 + -0.3 1,046,736 + +1.8 1,046,736 + +0.3 1,046,736 + +0.9 1,046,736 + +0.1 1,046,736 + -0.2 1,046,737 - -0.7 1,046,737 - +0.1 1,046,737 - +0.4 1,046,737 - +0.2 1,046,737 - -0.8 1,046,821 + -0.9 1,046,821 + +0.5 1,046,821 + +1.0 1,046,821 + -0.3 1,046,821 + -0.5 1,046,821 + -1.7 1,046,821 + -0.8 1,046,821 + -0.2 1,046,821 + -1.0 1,046,822 - +0.3 1,046,822 - +0.1 1,046,822 - +1.0 1,046,856 + -1.7 1,046,856 + +0.2 1,046,856 + +0.2 1,046,856 + -0.7 1,046,856 + -0.7 1,046,856 + +0.2 1,046,856 + -1.1 1,046,856 + -0.2 1,046,856 + -0.1 1,046,856 + -0.7 1,046,857 - +0.7 1,046,857 - +0.4 1,046,857 - +0.3 1,046,857 - +0.2 1,046,857 - -0.3 1,046,857 - -0.0 1,046,857 - -1.0 1,046,859 + -2.8 1,046,859 + -0.2 1,046,859 + -0.0 1,046,860 - -1.1 1,046,860 - -0.8 1,046,860 - -1.1 1,046,949 + +0.5 1,046,950 - -0.9 1,046,957 + -0.4 1,046,957 + -0.5 1,046,958 + -0.8 1,046,958 - -0.3 1,046,958 - +0.0 1,046,959 + -0.1 1,046,959 + -0.4 1,046,959 + -0.5 1,046,959 + -1.0 1,046,959 + -0.0 1,046,959 + -0.4 1,046,959 + -2.4 1,046,959 + -0.7 1,046,959 + +0.3 1,046,959 + -0.8 1,046,959 + -1.3 1,046,959 + -1.2 1,046,960 - -0.0 1,046,960 - -0.7 1,046,960 - -0.6 1,046,960 - +0.1 1,046,960 - +0.7 1,046,960 - -0.2 1,046,960 - -1.2 1,046,960 - +0.7 1,046,960 - -0.7 1,046,960 - -0.6 1,046,965 + -0.7 1,046,966 - -0.3 1,046,991 - -1.5 1,046,991 - +0.9 1,046,991 - -1.6 1,047,542 + LRK54_RS04945 0.21 +1.0 1,047,542 + LRK54_RS04945 0.21 -0.5 1,047,543 - LRK54_RS04945 0.21 -0.5 1,047,543 - LRK54_RS04945 0.21 -0.0 1,047,543 - LRK54_RS04945 0.21 -0.1 1,047,629 + LRK54_RS04945 0.25 +0.7 1,047,629 + LRK54_RS04945 0.25 +0.5 1,047,629 + LRK54_RS04945 0.25 -0.6 1,047,630 - LRK54_RS04945 0.25 +0.6 1,047,630 - LRK54_RS04945 0.25 +0.7 1,047,735 - LRK54_RS04945 0.29 +1.0 1,047,735 - LRK54_RS04945 0.29 +0.1
Or see this region's nucleotide sequence