Experiment: R2A with FW104 filtrate 0.5 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS04250 and LRK54_RS04255 are separated by 153 nucleotides LRK54_RS04255 and LRK54_RS04260 are separated by 368 nucleotides
LRK54_RS04250: LRK54_RS04250 - PilT/PilU family type 4a pilus ATPase, at 900,693 to 901,859
_RS04250
LRK54_RS04255: LRK54_RS04255 - type IV pilus twitching motility protein PilT, at 902,013 to 903,050
_RS04255
LRK54_RS04260: LRK54_RS04260 - pyrroline-5-carboxylate reductase, at 903,419 to 904,243
_RS04260
Position (kb) 902
903
904 Strain fitness (log2 ratio) -2
-1
0
1
2 at 901.360 kb on + strand, within LRK54_RS04250 at 901.360 kb on + strand, within LRK54_RS04250 at 901.360 kb on + strand, within LRK54_RS04250 at 901.360 kb on + strand, within LRK54_RS04250 at 901.361 kb on - strand, within LRK54_RS04250 at 901.361 kb on - strand, within LRK54_RS04250 at 901.361 kb on - strand, within LRK54_RS04250 at 901.361 kb on - strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.388 kb on + strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.389 kb on - strand, within LRK54_RS04250 at 901.571 kb on + strand, within LRK54_RS04250 at 901.571 kb on + strand, within LRK54_RS04250 at 901.571 kb on + strand, within LRK54_RS04250 at 901.571 kb on + strand, within LRK54_RS04250 at 901.572 kb on - strand, within LRK54_RS04250 at 901.572 kb on - strand, within LRK54_RS04250 at 901.591 kb on + strand, within LRK54_RS04250 at 901.591 kb on + strand, within LRK54_RS04250 at 901.591 kb on + strand, within LRK54_RS04250 at 901.591 kb on + strand, within LRK54_RS04250 at 901.591 kb on + strand, within LRK54_RS04250 at 901.591 kb on + strand, within LRK54_RS04250 at 901.592 kb on - strand, within LRK54_RS04250 at 901.592 kb on - strand, within LRK54_RS04250 at 901.592 kb on - strand, within LRK54_RS04250 at 901.865 kb on + strand at 901.866 kb on - strand at 901.866 kb on - strand at 902.041 kb on + strand at 902.146 kb on + strand, within LRK54_RS04255 at 902.146 kb on + strand, within LRK54_RS04255 at 902.146 kb on + strand, within LRK54_RS04255 at 902.146 kb on + strand, within LRK54_RS04255 at 902.146 kb on + strand, within LRK54_RS04255 at 902.146 kb on + strand, within LRK54_RS04255 at 902.146 kb on + strand, within LRK54_RS04255 at 902.146 kb on + strand, within LRK54_RS04255 at 902.146 kb on + strand, within LRK54_RS04255 at 902.147 kb on - strand, within LRK54_RS04255 at 902.147 kb on - strand, within LRK54_RS04255 at 902.147 kb on - strand, within LRK54_RS04255 at 902.147 kb on - strand, within LRK54_RS04255 at 902.147 kb on - strand, within LRK54_RS04255 at 902.147 kb on - strand, within LRK54_RS04255 at 902.147 kb on - strand, within LRK54_RS04255 at 902.147 kb on - strand, within LRK54_RS04255 at 902.147 kb on - strand, within LRK54_RS04255 at 902.147 kb on - strand, within LRK54_RS04255 at 902.455 kb on + strand, within LRK54_RS04255 at 902.455 kb on + strand, within LRK54_RS04255 at 902.455 kb on + strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.596 kb on + strand, within LRK54_RS04255 at 902.596 kb on + strand, within LRK54_RS04255 at 902.597 kb on - strand, within LRK54_RS04255 at 902.597 kb on - strand, within LRK54_RS04255 at 902.851 kb on + strand, within LRK54_RS04255 at 902.851 kb on + strand, within LRK54_RS04255 at 902.851 kb on + strand, within LRK54_RS04255 at 902.851 kb on + strand, within LRK54_RS04255 at 902.851 kb on + strand, within LRK54_RS04255 at 902.851 kb on + strand, within LRK54_RS04255 at 902.851 kb on + strand, within LRK54_RS04255 at 902.852 kb on - strand, within LRK54_RS04255 at 902.852 kb on - strand, within LRK54_RS04255 at 902.852 kb on - strand, within LRK54_RS04255 at 902.852 kb on - strand, within LRK54_RS04255 at 902.852 kb on - strand, within LRK54_RS04255 at 902.852 kb on - strand, within LRK54_RS04255 at 902.863 kb on + strand, within LRK54_RS04255 at 902.863 kb on + strand, within LRK54_RS04255 at 902.864 kb on - strand, within LRK54_RS04255 at 902.896 kb on + strand, within LRK54_RS04255 at 902.896 kb on + strand, within LRK54_RS04255 at 902.896 kb on + strand, within LRK54_RS04255 at 902.896 kb on + strand, within LRK54_RS04255 at 902.896 kb on + strand, within LRK54_RS04255 at 902.897 kb on - strand, within LRK54_RS04255 at 902.897 kb on - strand, within LRK54_RS04255 at 902.897 kb on - strand, within LRK54_RS04255 at 902.897 kb on - strand, within LRK54_RS04255 at 902.897 kb on - strand, within LRK54_RS04255 at 902.897 kb on - strand, within LRK54_RS04255 at 902.897 kb on - strand, within LRK54_RS04255 at 903.095 kb on + strand at 903.095 kb on + strand at 903.095 kb on + strand at 903.095 kb on + strand at 903.095 kb on + strand at 903.095 kb on + strand at 903.095 kb on + strand at 903.095 kb on + strand at 903.095 kb on + strand at 903.096 kb on - strand at 903.096 kb on - strand at 903.096 kb on - strand at 903.096 kb on - strand at 903.096 kb on - strand at 903.096 kb on - strand at 903.182 kb on + strand at 903.182 kb on + strand at 903.182 kb on + strand at 903.183 kb on - strand at 903.183 kb on - strand at 903.200 kb on - strand at 903.211 kb on + strand at 903.211 kb on + strand at 903.212 kb on - strand at 903.214 kb on + strand at 903.214 kb on + strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.572 kb on + strand, within LRK54_RS04260 at 903.573 kb on - strand, within LRK54_RS04260 at 903.573 kb on - strand, within LRK54_RS04260 at 903.950 kb on + strand, within LRK54_RS04260 at 903.950 kb on + strand, within LRK54_RS04260 at 903.950 kb on + strand, within LRK54_RS04260 at 903.950 kb on + strand, within LRK54_RS04260 at 903.950 kb on + strand, within LRK54_RS04260 at 903.950 kb on + strand, within LRK54_RS04260 at 903.951 kb on - strand, within LRK54_RS04260 at 903.951 kb on - strand, within LRK54_RS04260 at 903.951 kb on - strand, within LRK54_RS04260 at 903.951 kb on - strand, within LRK54_RS04260
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X remove 901,360 + LRK54_RS04250 0.57 +0.3 901,360 + LRK54_RS04250 0.57 +0.4 901,360 + LRK54_RS04250 0.57 -0.8 901,360 + LRK54_RS04250 0.57 +0.2 901,361 - LRK54_RS04250 0.57 -2.2 901,361 - LRK54_RS04250 0.57 -0.4 901,361 - LRK54_RS04250 0.57 -0.9 901,361 - LRK54_RS04250 0.57 -1.5 901,388 + LRK54_RS04250 0.60 +1.1 901,388 + LRK54_RS04250 0.60 +0.2 901,388 + LRK54_RS04250 0.60 -0.5 901,388 + LRK54_RS04250 0.60 +0.3 901,388 + LRK54_RS04250 0.60 -0.2 901,388 + LRK54_RS04250 0.60 +0.7 901,388 + LRK54_RS04250 0.60 -0.3 901,388 + LRK54_RS04250 0.60 -0.3 901,388 + LRK54_RS04250 0.60 -0.4 901,388 + LRK54_RS04250 0.60 -0.7 901,388 + LRK54_RS04250 0.60 -1.7 901,388 + LRK54_RS04250 0.60 -0.8 901,388 + LRK54_RS04250 0.60 -0.0 901,388 + LRK54_RS04250 0.60 -1.2 901,388 + LRK54_RS04250 0.60 +1.6 901,388 + LRK54_RS04250 0.60 -2.0 901,388 + LRK54_RS04250 0.60 +0.5 901,388 + LRK54_RS04250 0.60 -1.5 901,389 - LRK54_RS04250 0.60 +0.7 901,389 - LRK54_RS04250 0.60 -0.2 901,389 - LRK54_RS04250 0.60 -0.0 901,389 - LRK54_RS04250 0.60 -0.6 901,389 - LRK54_RS04250 0.60 +0.5 901,389 - LRK54_RS04250 0.60 +0.2 901,389 - LRK54_RS04250 0.60 -0.3 901,389 - LRK54_RS04250 0.60 +0.4 901,571 + LRK54_RS04250 0.75 -0.9 901,571 + LRK54_RS04250 0.75 +1.6 901,571 + LRK54_RS04250 0.75 +0.9 901,571 + LRK54_RS04250 0.75 -0.7 901,572 - LRK54_RS04250 0.75 -0.7 901,572 - LRK54_RS04250 0.75 -1.6 901,591 + LRK54_RS04250 0.77 -1.1 901,591 + LRK54_RS04250 0.77 -1.0 901,591 + LRK54_RS04250 0.77 -1.2 901,591 + LRK54_RS04250 0.77 +0.1 901,591 + LRK54_RS04250 0.77 +1.1 901,591 + LRK54_RS04250 0.77 +0.4 901,592 - LRK54_RS04250 0.77 +0.9 901,592 - LRK54_RS04250 0.77 -0.1 901,592 - LRK54_RS04250 0.77 -0.7 901,865 + -0.2 901,866 - -1.1 901,866 - -0.2 902,041 + -0.0 902,146 + LRK54_RS04255 0.13 +1.6 902,146 + LRK54_RS04255 0.13 +1.0 902,146 + LRK54_RS04255 0.13 +1.6 902,146 + LRK54_RS04255 0.13 -0.5 902,146 + LRK54_RS04255 0.13 +2.3 902,146 + LRK54_RS04255 0.13 +0.2 902,146 + LRK54_RS04255 0.13 +2.3 902,146 + LRK54_RS04255 0.13 -0.1 902,146 + LRK54_RS04255 0.13 +0.0 902,147 - LRK54_RS04255 0.13 -0.3 902,147 - LRK54_RS04255 0.13 +0.9 902,147 - LRK54_RS04255 0.13 +0.9 902,147 - LRK54_RS04255 0.13 -0.1 902,147 - LRK54_RS04255 0.13 +0.3 902,147 - LRK54_RS04255 0.13 +1.0 902,147 - LRK54_RS04255 0.13 -1.8 902,147 - LRK54_RS04255 0.13 +0.1 902,147 - LRK54_RS04255 0.13 +0.4 902,147 - LRK54_RS04255 0.13 +0.3 902,455 + LRK54_RS04255 0.43 +0.8 902,455 + LRK54_RS04255 0.43 +0.7 902,455 + LRK54_RS04255 0.43 -0.3 902,456 - LRK54_RS04255 0.43 +0.9 902,456 - LRK54_RS04255 0.43 +1.1 902,456 - LRK54_RS04255 0.43 +0.5 902,456 - LRK54_RS04255 0.43 -0.0 902,456 - LRK54_RS04255 0.43 +0.2 902,456 - LRK54_RS04255 0.43 -0.9 902,456 - LRK54_RS04255 0.43 +0.2 902,456 - LRK54_RS04255 0.43 -0.7 902,456 - LRK54_RS04255 0.43 +1.1 902,596 + LRK54_RS04255 0.56 +1.1 902,596 + LRK54_RS04255 0.56 +1.8 902,597 - LRK54_RS04255 0.56 +1.1 902,597 - LRK54_RS04255 0.56 +0.9 902,851 + LRK54_RS04255 0.81 +1.4 902,851 + LRK54_RS04255 0.81 +0.7 902,851 + LRK54_RS04255 0.81 +1.3 902,851 + LRK54_RS04255 0.81 +0.3 902,851 + LRK54_RS04255 0.81 +1.3 902,851 + LRK54_RS04255 0.81 -0.3 902,851 + LRK54_RS04255 0.81 -0.5 902,852 - LRK54_RS04255 0.81 +1.2 902,852 - LRK54_RS04255 0.81 +0.3 902,852 - LRK54_RS04255 0.81 +0.6 902,852 - LRK54_RS04255 0.81 -0.5 902,852 - LRK54_RS04255 0.81 +0.4 902,852 - LRK54_RS04255 0.81 +0.6 902,863 + LRK54_RS04255 0.82 +0.2 902,863 + LRK54_RS04255 0.82 -0.0 902,864 - LRK54_RS04255 0.82 -1.0 902,896 + LRK54_RS04255 0.85 -0.1 902,896 + LRK54_RS04255 0.85 +1.4 902,896 + LRK54_RS04255 0.85 -0.6 902,896 + LRK54_RS04255 0.85 -0.6 902,896 + LRK54_RS04255 0.85 +0.7 902,897 - LRK54_RS04255 0.85 +0.2 902,897 - LRK54_RS04255 0.85 +0.7 902,897 - LRK54_RS04255 0.85 +0.6 902,897 - LRK54_RS04255 0.85 -1.3 902,897 - LRK54_RS04255 0.85 +0.8 902,897 - LRK54_RS04255 0.85 -0.3 902,897 - LRK54_RS04255 0.85 +1.1 903,095 + -0.1 903,095 + +0.1 903,095 + +0.1 903,095 + -0.9 903,095 + -0.0 903,095 + -0.7 903,095 + -0.0 903,095 + -1.7 903,095 + -1.4 903,096 - -0.4 903,096 - +0.8 903,096 - -0.4 903,096 - -0.2 903,096 - -0.0 903,096 - -0.6 903,182 + -0.6 903,182 + +0.7 903,182 + -0.6 903,183 - +0.1 903,183 - +0.2 903,200 - -1.2 903,211 + +0.4 903,211 + +0.7 903,212 - -0.7 903,214 + -1.0 903,214 + -0.5 903,215 - -0.3 903,215 - +1.3 903,215 - -0.9 903,215 - -0.6 903,215 - -1.3 903,215 - +0.5 903,215 - +0.4 903,215 - -0.4 903,215 - -0.3 903,389 + +0.3 903,389 + -0.0 903,389 + +0.3 903,389 + -1.1 903,389 + +0.6 903,389 + -0.6 903,389 + -1.5 903,389 + +1.7 903,389 + +0.4 903,389 + +2.3 903,389 + -0.3 903,389 + -0.0 903,389 + -0.3 903,389 + -1.5 903,389 + -0.1 903,389 + -0.2 903,389 + +0.5 903,389 + +1.1 903,389 + -1.2 903,389 + +0.2 903,389 + -0.0 903,389 + -0.5 903,389 + -0.2 903,389 + -0.8 903,390 - -0.5 903,390 - -0.1 903,390 - -0.8 903,390 - -1.2 903,390 - +1.2 903,390 - -0.7 903,390 - +0.3 903,390 - -0.4 903,390 - -1.0 903,390 - -1.1 903,390 - +1.0 903,390 - +0.4 903,390 - -0.2 903,390 - +0.2 903,390 - +0.8 903,390 - +1.0 903,390 - +0.0 903,390 - +0.3 903,390 - -0.8 903,390 - +0.9 903,390 - +0.4 903,390 - +0.9 903,390 - +1.3 903,390 - +0.4 903,390 - -0.6 903,390 - -0.3 903,390 - -0.9 903,390 - -0.1 903,390 - +1.7 903,390 - -0.2 903,390 - +0.7 903,572 + LRK54_RS04260 0.19 +0.3 903,573 - LRK54_RS04260 0.19 -0.4 903,573 - LRK54_RS04260 0.19 -0.5 903,950 + LRK54_RS04260 0.64 -0.8 903,950 + LRK54_RS04260 0.64 +0.3 903,950 + LRK54_RS04260 0.64 -0.0 903,950 + LRK54_RS04260 0.64 -0.5 903,950 + LRK54_RS04260 0.64 -0.5 903,950 + LRK54_RS04260 0.64 +0.5 903,951 - LRK54_RS04260 0.64 -0.9 903,951 - LRK54_RS04260 0.64 -1.0 903,951 - LRK54_RS04260 0.64 -0.5 903,951 - LRK54_RS04260 0.64 -0.0
Or see this region's nucleotide sequence