Experiment: R2A with FW104 filtrate 0.5 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS04155 and LRK54_RS04160 are separated by 96 nucleotides LRK54_RS04160 and LRK54_RS04165 are separated by 20 nucleotides LRK54_RS04165 and LRK54_RS04170 overlap by 4 nucleotides
LRK54_RS04155: LRK54_RS04155 - hypothetical protein, at 876,403 to 876,792
_RS04155
LRK54_RS04160: LRK54_RS04160 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 876,889 to 877,623
_RS04160
LRK54_RS04165: LRK54_RS04165 - chemotaxis protein CheW, at 877,644 to 878,162
_RS04165
LRK54_RS04170: LRK54_RS04170 - chemotaxis protein CheB, at 878,159 to 879,742
_RS04170
Position (kb) 877
878
879 Strain fitness (log2 ratio) -2
-1
0
1
2 at 876.728 kb on + strand, within LRK54_RS04155 at 876.728 kb on + strand, within LRK54_RS04155 at 876.728 kb on + strand, within LRK54_RS04155 at 876.728 kb on + strand, within LRK54_RS04155 at 876.728 kb on + strand, within LRK54_RS04155 at 876.728 kb on + strand, within LRK54_RS04155 at 876.728 kb on + strand, within LRK54_RS04155 at 876.728 kb on + strand, within LRK54_RS04155 at 876.728 kb on + strand, within LRK54_RS04155 at 876.728 kb on + strand, within LRK54_RS04155 at 876.728 kb on + strand, within LRK54_RS04155 at 876.729 kb on - strand, within LRK54_RS04155 at 876.729 kb on - strand, within LRK54_RS04155 at 876.729 kb on - strand, within LRK54_RS04155 at 876.729 kb on - strand, within LRK54_RS04155 at 876.729 kb on - strand, within LRK54_RS04155 at 876.730 kb on - strand, within LRK54_RS04155 at 876.771 kb on + strand at 876.771 kb on + strand at 876.771 kb on + strand at 876.771 kb on + strand at 876.771 kb on + strand at 876.771 kb on + strand at 876.771 kb on + strand at 876.771 kb on + strand at 876.771 kb on + strand at 876.771 kb on + strand at 876.771 kb on + strand at 876.772 kb on - strand at 876.772 kb on - strand at 876.772 kb on - strand at 876.772 kb on - strand at 876.772 kb on - strand at 876.772 kb on - strand at 876.854 kb on + strand at 876.855 kb on - strand at 876.855 kb on - strand at 876.855 kb on - strand at 876.855 kb on - strand at 876.903 kb on + strand at 876.931 kb on + strand at 876.931 kb on + strand at 876.931 kb on + strand at 877.036 kb on + strand, within LRK54_RS04160 at 877.036 kb on + strand, within LRK54_RS04160 at 877.036 kb on + strand, within LRK54_RS04160 at 877.036 kb on + strand, within LRK54_RS04160 at 877.037 kb on - strand, within LRK54_RS04160 at 877.037 kb on - strand, within LRK54_RS04160 at 877.037 kb on - strand, within LRK54_RS04160 at 877.037 kb on - strand, within LRK54_RS04160 at 877.037 kb on - strand, within LRK54_RS04160 at 877.037 kb on - strand, within LRK54_RS04160 at 877.037 kb on - strand, within LRK54_RS04160 at 877.037 kb on - strand, within LRK54_RS04160 at 877.621 kb on + strand at 877.621 kb on + strand at 877.621 kb on + strand at 877.621 kb on + strand at 877.621 kb on + strand at 877.767 kb on + strand, within LRK54_RS04165 at 877.767 kb on + strand, within LRK54_RS04165 at 877.767 kb on + strand, within LRK54_RS04165 at 877.768 kb on - strand, within LRK54_RS04165 at 878.115 kb on + strand at 878.116 kb on - strand at 878.204 kb on - strand at 878.204 kb on - strand at 878.666 kb on + strand, within LRK54_RS04170 at 878.666 kb on + strand, within LRK54_RS04170 at 878.666 kb on + strand, within LRK54_RS04170 at 878.666 kb on + strand, within LRK54_RS04170 at 878.667 kb on - strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.772 kb on + strand, within LRK54_RS04170 at 878.773 kb on - strand, within LRK54_RS04170 at 878.773 kb on - strand, within LRK54_RS04170 at 878.773 kb on - strand, within LRK54_RS04170 at 878.773 kb on - strand, within LRK54_RS04170 at 878.773 kb on - strand, within LRK54_RS04170 at 878.773 kb on - strand, within LRK54_RS04170 at 878.773 kb on - strand, within LRK54_RS04170 at 878.773 kb on - strand, within LRK54_RS04170 at 878.773 kb on - strand, within LRK54_RS04170 at 878.773 kb on - strand, within LRK54_RS04170 at 878.773 kb on - strand, within LRK54_RS04170 at 878.773 kb on - strand, within LRK54_RS04170 at 878.773 kb on - strand, within LRK54_RS04170 at 878.773 kb on - strand, within LRK54_RS04170 at 878.773 kb on - strand, within LRK54_RS04170
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X remove 876,728 + LRK54_RS04155 0.83 +0.7 876,728 + LRK54_RS04155 0.83 -0.0 876,728 + LRK54_RS04155 0.83 +0.1 876,728 + LRK54_RS04155 0.83 -0.9 876,728 + LRK54_RS04155 0.83 -0.3 876,728 + LRK54_RS04155 0.83 +0.7 876,728 + LRK54_RS04155 0.83 -0.4 876,728 + LRK54_RS04155 0.83 -0.2 876,728 + LRK54_RS04155 0.83 +0.3 876,728 + LRK54_RS04155 0.83 -1.7 876,728 + LRK54_RS04155 0.83 +0.3 876,729 - LRK54_RS04155 0.84 -0.3 876,729 - LRK54_RS04155 0.84 +1.3 876,729 - LRK54_RS04155 0.84 -0.1 876,729 - LRK54_RS04155 0.84 -0.3 876,729 - LRK54_RS04155 0.84 +0.8 876,730 - LRK54_RS04155 0.84 -1.5 876,771 + -1.4 876,771 + +0.7 876,771 + +0.2 876,771 + +0.7 876,771 + +0.2 876,771 + +0.8 876,771 + -0.1 876,771 + +0.4 876,771 + +1.0 876,771 + -1.0 876,771 + -0.2 876,772 - -0.1 876,772 - +1.0 876,772 - -0.7 876,772 - -0.5 876,772 - -1.2 876,772 - +0.3 876,854 + +0.7 876,855 - -2.3 876,855 - -1.1 876,855 - -1.4 876,855 - +0.2 876,903 + -0.1 876,931 + +1.3 876,931 + -0.3 876,931 + +0.7 877,036 + LRK54_RS04160 0.20 +0.7 877,036 + LRK54_RS04160 0.20 +0.9 877,036 + LRK54_RS04160 0.20 +1.3 877,036 + LRK54_RS04160 0.20 +0.4 877,037 - LRK54_RS04160 0.20 +0.9 877,037 - LRK54_RS04160 0.20 +0.0 877,037 - LRK54_RS04160 0.20 +0.9 877,037 - LRK54_RS04160 0.20 +0.3 877,037 - LRK54_RS04160 0.20 -0.4 877,037 - LRK54_RS04160 0.20 +0.5 877,037 - LRK54_RS04160 0.20 +0.1 877,037 - LRK54_RS04160 0.20 +0.2 877,621 + +2.0 877,621 + +0.2 877,621 + -0.1 877,621 + +0.1 877,621 + -0.2 877,767 + LRK54_RS04165 0.24 +0.7 877,767 + LRK54_RS04165 0.24 -0.3 877,767 + LRK54_RS04165 0.24 -0.0 877,768 - LRK54_RS04165 0.24 +0.6 878,115 + -0.3 878,116 - +0.2 878,204 - -0.4 878,204 - +1.3 878,666 + LRK54_RS04170 0.32 -0.2 878,666 + LRK54_RS04170 0.32 +1.6 878,666 + LRK54_RS04170 0.32 +0.1 878,666 + LRK54_RS04170 0.32 -1.3 878,667 - LRK54_RS04170 0.32 -0.6 878,772 + LRK54_RS04170 0.39 -0.3 878,772 + LRK54_RS04170 0.39 -0.4 878,772 + LRK54_RS04170 0.39 -0.2 878,772 + LRK54_RS04170 0.39 +0.8 878,772 + LRK54_RS04170 0.39 +0.1 878,772 + LRK54_RS04170 0.39 +0.7 878,772 + LRK54_RS04170 0.39 +0.0 878,772 + LRK54_RS04170 0.39 +1.0 878,772 + LRK54_RS04170 0.39 -0.0 878,772 + LRK54_RS04170 0.39 +0.2 878,772 + LRK54_RS04170 0.39 -1.3 878,772 + LRK54_RS04170 0.39 -0.2 878,772 + LRK54_RS04170 0.39 +2.0 878,772 + LRK54_RS04170 0.39 +0.3 878,772 + LRK54_RS04170 0.39 -0.7 878,772 + LRK54_RS04170 0.39 +0.7 878,772 + LRK54_RS04170 0.39 +0.2 878,772 + LRK54_RS04170 0.39 -0.3 878,772 + LRK54_RS04170 0.39 -2.2 878,772 + LRK54_RS04170 0.39 -0.6 878,772 + LRK54_RS04170 0.39 -0.8 878,772 + LRK54_RS04170 0.39 +0.3 878,772 + LRK54_RS04170 0.39 +0.4 878,772 + LRK54_RS04170 0.39 +0.7 878,772 + LRK54_RS04170 0.39 -0.1 878,772 + LRK54_RS04170 0.39 -0.4 878,773 - LRK54_RS04170 0.39 -0.3 878,773 - LRK54_RS04170 0.39 -1.1 878,773 - LRK54_RS04170 0.39 -1.0 878,773 - LRK54_RS04170 0.39 -0.6 878,773 - LRK54_RS04170 0.39 +0.2 878,773 - LRK54_RS04170 0.39 -0.3 878,773 - LRK54_RS04170 0.39 -1.0 878,773 - LRK54_RS04170 0.39 -1.3 878,773 - LRK54_RS04170 0.39 -0.1 878,773 - LRK54_RS04170 0.39 -0.7 878,773 - LRK54_RS04170 0.39 -0.2 878,773 - LRK54_RS04170 0.39 -0.7 878,773 - LRK54_RS04170 0.39 -0.6 878,773 - LRK54_RS04170 0.39 -0.9 878,773 - LRK54_RS04170 0.39 -0.8
Or see this region's nucleotide sequence