Experiment: R2A with FW104 filtrate 0.5 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS04150 and LRK54_RS04155 are separated by 12 nucleotides LRK54_RS04155 and LRK54_RS04160 are separated by 96 nucleotides LRK54_RS04160 and LRK54_RS04165 are separated by 20 nucleotides LRK54_RS04165 and LRK54_RS04170 overlap by 4 nucleotides
LRK54_RS04150: LRK54_RS04150 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 875,026 to 876,390
_RS04150
LRK54_RS04155: LRK54_RS04155 - hypothetical protein, at 876,403 to 876,792
_RS04155
LRK54_RS04160: LRK54_RS04160 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 876,889 to 877,623
_RS04160
LRK54_RS04165: LRK54_RS04165 - chemotaxis protein CheW, at 877,644 to 878,162
_RS04165
LRK54_RS04170: LRK54_RS04170 - chemotaxis protein CheB, at 878,159 to 879,742
_RS04170
Position (kb) 876
877
878 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 875.944 kb on + strand, within LRK54_RS04150 at 875.944 kb on + strand, within LRK54_RS04150 at 875.944 kb on + strand, within LRK54_RS04150 at 875.944 kb on + strand, within LRK54_RS04150 at 875.945 kb on - strand, within LRK54_RS04150 at 875.945 kb on - strand, within LRK54_RS04150 at 875.945 kb on - strand, within LRK54_RS04150 at 875.945 kb on - strand, within LRK54_RS04150 at 875.956 kb on + strand, within LRK54_RS04150 at 875.956 kb on + strand, within LRK54_RS04150 at 875.956 kb on + strand, within LRK54_RS04150 at 875.957 kb on - strand, within LRK54_RS04150 at 875.957 kb on - strand, within LRK54_RS04150 at 875.957 kb on - strand, within LRK54_RS04150 at 875.965 kb on + strand, within LRK54_RS04150 at 875.965 kb on + strand, within LRK54_RS04150 at 875.965 kb on + strand, within LRK54_RS04150 at 875.965 kb on + strand, within LRK54_RS04150 at 875.965 kb on + strand, within LRK54_RS04150 at 875.965 kb on + strand, within LRK54_RS04150 at 875.965 kb on + strand, within LRK54_RS04150 at 875.966 kb on - strand, within LRK54_RS04150 at 875.966 kb on - strand, within LRK54_RS04150 at 875.966 kb on - strand, within LRK54_RS04150 at 875.966 kb on - strand, within LRK54_RS04150 at 875.966 kb on - strand, within LRK54_RS04150 at 875.966 kb on - strand, within LRK54_RS04150 at 875.966 kb on - strand, within LRK54_RS04150 at 875.966 kb on - strand, within LRK54_RS04150 at 875.966 kb on - strand, within LRK54_RS04150 at 875.966 kb on - strand, within LRK54_RS04150 at 875.966 kb on - strand, within LRK54_RS04150 at 875.966 kb on - strand, within LRK54_RS04150 at 876.001 kb on + strand, within LRK54_RS04150 at 876.001 kb on + strand, within LRK54_RS04150 at 876.001 kb on + strand, within LRK54_RS04150 at 876.001 kb on + strand, within LRK54_RS04150 at 876.001 kb on + strand, within LRK54_RS04150 at 876.001 kb on + strand, within LRK54_RS04150 at 876.001 kb on + strand, within LRK54_RS04150 at 876.001 kb on + strand, within LRK54_RS04150 at 876.001 kb on + strand, within LRK54_RS04150 at 876.001 kb on + strand, within LRK54_RS04150 at 876.001 kb on + strand, within LRK54_RS04150 at 876.001 kb on + strand, within LRK54_RS04150 at 876.001 kb on + strand, within LRK54_RS04150 at 876.001 kb on + strand, within LRK54_RS04150 at 876.002 kb on - strand, within LRK54_RS04150 at 876.002 kb on - strand, within LRK54_RS04150 at 876.002 kb on - strand, within LRK54_RS04150 at 876.002 kb on - strand, within LRK54_RS04150 at 876.002 kb on - strand, within LRK54_RS04150 at 876.002 kb on - strand, within LRK54_RS04150 at 876.002 kb on - strand, within LRK54_RS04150 at 876.002 kb on - strand, within LRK54_RS04150 at 876.002 kb on - strand, within LRK54_RS04150 at 876.002 kb on - strand, within LRK54_RS04150 at 876.002 kb on - strand, within LRK54_RS04150 at 876.211 kb on + strand, within LRK54_RS04150 at 876.211 kb on + strand, within LRK54_RS04150 at 876.212 kb on - strand, within LRK54_RS04150 at 876.212 kb on - strand, within LRK54_RS04150 at 876.212 kb on - strand, within LRK54_RS04150 at 876.244 kb on + strand, within LRK54_RS04150 at 876.244 kb on + strand, within LRK54_RS04150 at 876.244 kb on + strand, within LRK54_RS04150 at 876.244 kb on + strand, within LRK54_RS04150 at 876.244 kb on + strand, within LRK54_RS04150 at 876.244 kb on + strand, within LRK54_RS04150 at 876.244 kb on + strand, within LRK54_RS04150 at 876.244 kb on + strand, within LRK54_RS04150 at 876.244 kb on + strand, within LRK54_RS04150 at 876.245 kb on - strand, within LRK54_RS04150 at 876.245 kb on - strand, within LRK54_RS04150 at 876.245 kb on - strand, within LRK54_RS04150 at 876.245 kb on - strand, within LRK54_RS04150 at 876.245 kb on - strand, within LRK54_RS04150 at 876.298 kb on + strand at 876.298 kb on + strand at 876.298 kb on + strand at 876.298 kb on + strand at 876.298 kb on + strand at 876.298 kb on + strand at 876.298 kb on + strand at 876.298 kb on + strand at 876.298 kb on + strand at 876.298 kb on + strand at 876.298 kb on + strand at 876.298 kb on + strand at 876.299 kb on - strand at 876.299 kb on - strand at 876.299 kb on - strand at 876.299 kb on - strand at 876.299 kb on - strand at 876.299 kb on - strand at 876.299 kb on - strand at 876.299 kb on - strand at 876.299 kb on - strand at 876.299 kb on - strand at 876.299 kb on - strand at 876.299 kb on - strand at 876.299 kb on - strand at 876.299 kb on - strand at 876.299 kb on - strand at 876.299 kb on - strand at 876.299 kb on - strand at 876.299 kb on - strand at 876.299 kb on - strand at 876.299 kb on - strand at 876.299 kb on - strand at 876.299 kb on - strand at 876.299 kb on - strand at 876.313 kb on + strand at 876.313 kb on + strand at 876.313 kb on + strand at 876.313 kb on + strand at 876.313 kb on + strand at 876.313 kb on + strand at 876.314 kb on - strand at 876.314 kb on - strand at 876.314 kb on - strand at 876.314 kb on - strand at 876.314 kb on - strand at 876.494 kb on + strand, within LRK54_RS04155 at 876.494 kb on + strand, within LRK54_RS04155 at 876.494 kb on + strand, within LRK54_RS04155 at 876.494 kb on + strand, within LRK54_RS04155 at 876.494 kb on + strand, within LRK54_RS04155 at 876.494 kb on + strand, within LRK54_RS04155 at 876.494 kb on + strand, within LRK54_RS04155 at 876.494 kb on + strand, within LRK54_RS04155 at 876.494 kb on + strand, within LRK54_RS04155 at 876.495 kb on - strand, within LRK54_RS04155 at 876.495 kb on - strand, within LRK54_RS04155 at 876.495 kb on - strand, within LRK54_RS04155 at 876.495 kb on - strand, within LRK54_RS04155 at 876.495 kb on - strand, within LRK54_RS04155 at 876.495 kb on - strand, within LRK54_RS04155 at 876.495 kb on - strand, within LRK54_RS04155 at 876.495 kb on - strand, within LRK54_RS04155 at 876.495 kb on - strand, within LRK54_RS04155 at 876.495 kb on - strand, within LRK54_RS04155 at 876.540 kb on + strand, within LRK54_RS04155 at 876.540 kb on + strand, within LRK54_RS04155 at 876.540 kb on + strand, within LRK54_RS04155 at 876.540 kb on + strand, within LRK54_RS04155 at 876.540 kb on + strand, within LRK54_RS04155 at 876.540 kb on + strand, within LRK54_RS04155 at 876.540 kb on + strand, within LRK54_RS04155 at 876.540 kb on + strand, within LRK54_RS04155 at 876.540 kb on + strand, within LRK54_RS04155 at 876.540 kb on + strand, within LRK54_RS04155 at 876.540 kb on + strand, within LRK54_RS04155 at 876.540 kb on + strand, within LRK54_RS04155 at 876.540 kb on + strand, within LRK54_RS04155 at 876.540 kb on + strand, within LRK54_RS04155 at 876.540 kb on + strand, within LRK54_RS04155 at 876.541 kb on - strand, within LRK54_RS04155 at 876.541 kb on - strand, within LRK54_RS04155 at 876.541 kb on - strand, within LRK54_RS04155 at 876.541 kb on - strand, within LRK54_RS04155 at 876.541 kb on - strand, within LRK54_RS04155 at 876.728 kb on + strand, within LRK54_RS04155 at 876.728 kb on + strand, within LRK54_RS04155 at 876.728 kb on + strand, within LRK54_RS04155 at 876.728 kb on + strand, within LRK54_RS04155 at 876.728 kb on + strand, within LRK54_RS04155 at 876.728 kb on + strand, within LRK54_RS04155 at 876.728 kb on + strand, within LRK54_RS04155 at 876.728 kb on + strand, within LRK54_RS04155 at 876.728 kb on + strand, within LRK54_RS04155 at 876.728 kb on + strand, within LRK54_RS04155 at 876.728 kb on + strand, within LRK54_RS04155 at 876.729 kb on - strand, within LRK54_RS04155 at 876.729 kb on - strand, within LRK54_RS04155 at 876.729 kb on - strand, within LRK54_RS04155 at 876.729 kb on - strand, within LRK54_RS04155 at 876.729 kb on - strand, within LRK54_RS04155 at 876.730 kb on - strand, within LRK54_RS04155 at 876.771 kb on + strand at 876.771 kb on + strand at 876.771 kb on + strand at 876.771 kb on + strand at 876.771 kb on + strand at 876.771 kb on + strand at 876.771 kb on + strand at 876.771 kb on + strand at 876.771 kb on + strand at 876.771 kb on + strand at 876.771 kb on + strand at 876.772 kb on - strand at 876.772 kb on - strand at 876.772 kb on - strand at 876.772 kb on - strand at 876.772 kb on - strand at 876.772 kb on - strand at 876.854 kb on + strand at 876.855 kb on - strand at 876.855 kb on - strand at 876.855 kb on - strand at 876.855 kb on - strand at 876.903 kb on + strand at 876.931 kb on + strand at 876.931 kb on + strand at 876.931 kb on + strand at 877.036 kb on + strand, within LRK54_RS04160 at 877.036 kb on + strand, within LRK54_RS04160 at 877.036 kb on + strand, within LRK54_RS04160 at 877.036 kb on + strand, within LRK54_RS04160 at 877.037 kb on - strand, within LRK54_RS04160 at 877.037 kb on - strand, within LRK54_RS04160 at 877.037 kb on - strand, within LRK54_RS04160 at 877.037 kb on - strand, within LRK54_RS04160 at 877.037 kb on - strand, within LRK54_RS04160 at 877.037 kb on - strand, within LRK54_RS04160 at 877.037 kb on - strand, within LRK54_RS04160 at 877.037 kb on - strand, within LRK54_RS04160 at 877.621 kb on + strand at 877.621 kb on + strand at 877.621 kb on + strand at 877.621 kb on + strand at 877.621 kb on + strand at 877.767 kb on + strand, within LRK54_RS04165 at 877.767 kb on + strand, within LRK54_RS04165 at 877.767 kb on + strand, within LRK54_RS04165 at 877.768 kb on - strand, within LRK54_RS04165 at 878.115 kb on + strand at 878.116 kb on - strand at 878.204 kb on - strand at 878.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X remove 875,944 + LRK54_RS04150 0.67 +0.1 875,944 + LRK54_RS04150 0.67 -1.6 875,944 + LRK54_RS04150 0.67 -0.4 875,944 + LRK54_RS04150 0.67 +0.3 875,945 - LRK54_RS04150 0.67 +0.1 875,945 - LRK54_RS04150 0.67 +1.1 875,945 - LRK54_RS04150 0.67 -0.2 875,945 - LRK54_RS04150 0.67 +0.3 875,956 + LRK54_RS04150 0.68 -0.7 875,956 + LRK54_RS04150 0.68 -2.8 875,956 + LRK54_RS04150 0.68 -0.0 875,957 - LRK54_RS04150 0.68 +1.0 875,957 - LRK54_RS04150 0.68 +1.3 875,957 - LRK54_RS04150 0.68 +0.1 875,965 + LRK54_RS04150 0.69 +0.1 875,965 + LRK54_RS04150 0.69 +1.1 875,965 + LRK54_RS04150 0.69 -1.4 875,965 + LRK54_RS04150 0.69 -0.8 875,965 + LRK54_RS04150 0.69 +1.6 875,965 + LRK54_RS04150 0.69 +0.3 875,965 + LRK54_RS04150 0.69 -0.6 875,966 - LRK54_RS04150 0.69 -1.4 875,966 - LRK54_RS04150 0.69 +1.1 875,966 - LRK54_RS04150 0.69 -0.8 875,966 - LRK54_RS04150 0.69 +0.3 875,966 - LRK54_RS04150 0.69 +0.7 875,966 - LRK54_RS04150 0.69 -0.1 875,966 - LRK54_RS04150 0.69 +0.8 875,966 - LRK54_RS04150 0.69 -0.2 875,966 - LRK54_RS04150 0.69 -0.7 875,966 - LRK54_RS04150 0.69 -1.3 875,966 - LRK54_RS04150 0.69 +0.2 875,966 - LRK54_RS04150 0.69 -0.8 876,001 + LRK54_RS04150 0.71 +1.5 876,001 + LRK54_RS04150 0.71 -2.6 876,001 + LRK54_RS04150 0.71 +0.5 876,001 + LRK54_RS04150 0.71 -0.1 876,001 + LRK54_RS04150 0.71 -0.1 876,001 + LRK54_RS04150 0.71 -0.5 876,001 + LRK54_RS04150 0.71 +0.5 876,001 + LRK54_RS04150 0.71 -1.1 876,001 + LRK54_RS04150 0.71 -0.7 876,001 + LRK54_RS04150 0.71 +0.1 876,001 + LRK54_RS04150 0.71 -0.2 876,001 + LRK54_RS04150 0.71 +0.1 876,001 + LRK54_RS04150 0.71 -0.6 876,001 + LRK54_RS04150 0.71 -0.4 876,002 - LRK54_RS04150 0.72 +0.2 876,002 - LRK54_RS04150 0.72 -0.3 876,002 - LRK54_RS04150 0.72 +0.3 876,002 - LRK54_RS04150 0.72 -0.9 876,002 - LRK54_RS04150 0.72 +1.4 876,002 - LRK54_RS04150 0.72 -0.1 876,002 - LRK54_RS04150 0.72 -0.4 876,002 - LRK54_RS04150 0.72 -0.3 876,002 - LRK54_RS04150 0.72 +0.3 876,002 - LRK54_RS04150 0.72 +0.6 876,002 - LRK54_RS04150 0.72 +0.1 876,211 + LRK54_RS04150 0.87 +0.1 876,211 + LRK54_RS04150 0.87 -1.2 876,212 - LRK54_RS04150 0.87 +0.3 876,212 - LRK54_RS04150 0.87 +0.3 876,212 - LRK54_RS04150 0.87 -0.5 876,244 + LRK54_RS04150 0.89 -0.3 876,244 + LRK54_RS04150 0.89 -0.9 876,244 + LRK54_RS04150 0.89 -0.9 876,244 + LRK54_RS04150 0.89 -0.1 876,244 + LRK54_RS04150 0.89 +0.1 876,244 + LRK54_RS04150 0.89 -1.2 876,244 + LRK54_RS04150 0.89 -0.7 876,244 + LRK54_RS04150 0.89 +1.1 876,244 + LRK54_RS04150 0.89 +0.1 876,245 - LRK54_RS04150 0.89 -1.2 876,245 - LRK54_RS04150 0.89 -0.0 876,245 - LRK54_RS04150 0.89 -1.2 876,245 - LRK54_RS04150 0.89 -1.5 876,245 - LRK54_RS04150 0.89 -0.0 876,298 + +0.5 876,298 + -0.5 876,298 + -0.4 876,298 + +1.6 876,298 + -0.8 876,298 + -0.3 876,298 + -0.3 876,298 + +0.4 876,298 + -1.3 876,298 + +0.4 876,298 + -1.0 876,298 + +0.7 876,299 - -1.8 876,299 - -0.2 876,299 - -0.6 876,299 - -0.1 876,299 - -0.2 876,299 - +0.2 876,299 - -0.6 876,299 - -1.9 876,299 - -0.0 876,299 - +0.2 876,299 - -0.2 876,299 - +0.6 876,299 - -0.8 876,299 - +0.8 876,299 - +0.3 876,299 - +0.1 876,299 - -0.4 876,299 - -0.7 876,299 - -0.4 876,299 - -0.1 876,299 - -0.0 876,299 - -0.0 876,299 - -2.4 876,313 + +0.5 876,313 + +0.0 876,313 + +0.4 876,313 + +0.3 876,313 + -0.1 876,313 + -0.6 876,314 - +0.1 876,314 - -1.2 876,314 - -0.1 876,314 - -0.9 876,314 - -0.1 876,494 + LRK54_RS04155 0.23 -0.7 876,494 + LRK54_RS04155 0.23 -2.1 876,494 + LRK54_RS04155 0.23 -0.1 876,494 + LRK54_RS04155 0.23 +0.6 876,494 + LRK54_RS04155 0.23 +0.3 876,494 + LRK54_RS04155 0.23 +0.6 876,494 + LRK54_RS04155 0.23 -1.6 876,494 + LRK54_RS04155 0.23 +0.1 876,494 + LRK54_RS04155 0.23 +0.1 876,495 - LRK54_RS04155 0.24 +1.3 876,495 - LRK54_RS04155 0.24 +0.1 876,495 - LRK54_RS04155 0.24 +0.9 876,495 - LRK54_RS04155 0.24 -0.2 876,495 - LRK54_RS04155 0.24 +0.4 876,495 - LRK54_RS04155 0.24 +0.3 876,495 - LRK54_RS04155 0.24 -0.1 876,495 - LRK54_RS04155 0.24 +0.8 876,495 - LRK54_RS04155 0.24 +0.1 876,495 - LRK54_RS04155 0.24 +0.7 876,540 + LRK54_RS04155 0.35 +0.6 876,540 + LRK54_RS04155 0.35 +0.0 876,540 + LRK54_RS04155 0.35 +0.3 876,540 + LRK54_RS04155 0.35 -1.2 876,540 + LRK54_RS04155 0.35 +0.0 876,540 + LRK54_RS04155 0.35 -1.3 876,540 + LRK54_RS04155 0.35 +1.1 876,540 + LRK54_RS04155 0.35 -0.2 876,540 + LRK54_RS04155 0.35 -0.6 876,540 + LRK54_RS04155 0.35 -2.3 876,540 + LRK54_RS04155 0.35 -0.7 876,540 + LRK54_RS04155 0.35 +0.5 876,540 + LRK54_RS04155 0.35 -0.3 876,540 + LRK54_RS04155 0.35 -1.7 876,540 + LRK54_RS04155 0.35 -0.2 876,541 - LRK54_RS04155 0.35 -0.8 876,541 - LRK54_RS04155 0.35 -1.4 876,541 - LRK54_RS04155 0.35 +0.1 876,541 - LRK54_RS04155 0.35 -1.4 876,541 - LRK54_RS04155 0.35 -0.5 876,728 + LRK54_RS04155 0.83 +0.7 876,728 + LRK54_RS04155 0.83 -0.0 876,728 + LRK54_RS04155 0.83 +0.1 876,728 + LRK54_RS04155 0.83 -0.9 876,728 + LRK54_RS04155 0.83 -0.3 876,728 + LRK54_RS04155 0.83 +0.7 876,728 + LRK54_RS04155 0.83 -0.4 876,728 + LRK54_RS04155 0.83 -0.2 876,728 + LRK54_RS04155 0.83 +0.3 876,728 + LRK54_RS04155 0.83 -1.7 876,728 + LRK54_RS04155 0.83 +0.3 876,729 - LRK54_RS04155 0.84 -0.3 876,729 - LRK54_RS04155 0.84 +1.3 876,729 - LRK54_RS04155 0.84 -0.1 876,729 - LRK54_RS04155 0.84 -0.3 876,729 - LRK54_RS04155 0.84 +0.8 876,730 - LRK54_RS04155 0.84 -1.5 876,771 + -1.4 876,771 + +0.7 876,771 + +0.2 876,771 + +0.7 876,771 + +0.2 876,771 + +0.8 876,771 + -0.1 876,771 + +0.4 876,771 + +1.0 876,771 + -1.0 876,771 + -0.2 876,772 - -0.1 876,772 - +1.0 876,772 - -0.7 876,772 - -0.5 876,772 - -1.2 876,772 - +0.3 876,854 + +0.7 876,855 - -2.3 876,855 - -1.1 876,855 - -1.4 876,855 - +0.2 876,903 + -0.1 876,931 + +1.3 876,931 + -0.3 876,931 + +0.7 877,036 + LRK54_RS04160 0.20 +0.7 877,036 + LRK54_RS04160 0.20 +0.9 877,036 + LRK54_RS04160 0.20 +1.3 877,036 + LRK54_RS04160 0.20 +0.4 877,037 - LRK54_RS04160 0.20 +0.9 877,037 - LRK54_RS04160 0.20 +0.0 877,037 - LRK54_RS04160 0.20 +0.9 877,037 - LRK54_RS04160 0.20 +0.3 877,037 - LRK54_RS04160 0.20 -0.4 877,037 - LRK54_RS04160 0.20 +0.5 877,037 - LRK54_RS04160 0.20 +0.1 877,037 - LRK54_RS04160 0.20 +0.2 877,621 + +2.0 877,621 + +0.2 877,621 + -0.1 877,621 + +0.1 877,621 + -0.2 877,767 + LRK54_RS04165 0.24 +0.7 877,767 + LRK54_RS04165 0.24 -0.3 877,767 + LRK54_RS04165 0.24 -0.0 877,768 - LRK54_RS04165 0.24 +0.6 878,115 + -0.3 878,116 - +0.2 878,204 - -0.4 878,204 - +1.3
Or see this region's nucleotide sequence