Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04100

Experiment: R2A with FW104 filtrate 0.5 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS04090 and LRK54_RS04095 are separated by 98 nucleotidesLRK54_RS04095 and LRK54_RS04100 overlap by 2 nucleotidesLRK54_RS04100 and LRK54_RS04105 overlap by 4 nucleotides LRK54_RS04090: LRK54_RS04090 - response regulator transcription factor, at 863,902 to 864,633 _RS04090 LRK54_RS04095: LRK54_RS04095 - arylesterase, at 864,732 to 865,343 _RS04095 LRK54_RS04100: LRK54_RS04100 - ATP-binding cassette domain-containing protein, at 865,342 to 866,043 _RS04100 LRK54_RS04105: LRK54_RS04105 - FtsX-like permease family protein, at 866,040 to 868,523 _RS04105 Position (kb) 865 866 867Strain fitness (log2 ratio) -2 -1 0 1 2 3at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.476 kb on + strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.477 kb on - strand, within LRK54_RS04090at 864.524 kb on + strand, within LRK54_RS04090at 864.524 kb on + strand, within LRK54_RS04090at 864.524 kb on + strand, within LRK54_RS04090at 864.525 kb on - strand, within LRK54_RS04090at 864.525 kb on - strand, within LRK54_RS04090at 864.625 kb on + strandat 864.625 kb on + strandat 864.625 kb on + strandat 864.625 kb on + strandat 864.625 kb on + strandat 864.625 kb on + strandat 864.625 kb on + strandat 864.625 kb on + strandat 864.625 kb on + strandat 864.625 kb on + strandat 864.625 kb on + strandat 864.625 kb on + strandat 864.625 kb on + strandat 864.625 kb on + strandat 864.625 kb on + strandat 864.625 kb on + strandat 864.625 kb on + strandat 864.625 kb on + strandat 864.625 kb on + strandat 864.625 kb on + strandat 864.625 kb on + strandat 864.625 kb on + strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.626 kb on - strandat 864.627 kb on - strandat 864.640 kb on + strandat 864.640 kb on + strandat 864.640 kb on + strandat 864.640 kb on + strandat 864.640 kb on + strandat 864.641 kb on - strandat 864.641 kb on - strandat 864.641 kb on - strandat 864.641 kb on - strandat 864.641 kb on - strandat 864.641 kb on - strandat 864.641 kb on - strandat 864.641 kb on - strandat 864.641 kb on - strandat 864.641 kb on - strandat 864.641 kb on - strandat 864.641 kb on - strandat 864.641 kb on - strandat 864.658 kb on + strandat 864.658 kb on + strandat 864.658 kb on + strandat 864.658 kb on + strandat 864.658 kb on + strandat 864.658 kb on + strandat 864.659 kb on - strandat 864.659 kb on - strandat 864.659 kb on - strandat 864.659 kb on - strandat 864.659 kb on - strandat 864.670 kb on + strandat 864.671 kb on - strandat 864.898 kb on + strand, within LRK54_RS04095at 864.898 kb on + strand, within LRK54_RS04095at 864.898 kb on + strand, within LRK54_RS04095at 864.898 kb on + strand, within LRK54_RS04095at 864.898 kb on + strand, within LRK54_RS04095at 864.898 kb on + strand, within LRK54_RS04095at 864.899 kb on - strand, within LRK54_RS04095at 864.899 kb on - strand, within LRK54_RS04095at 864.899 kb on - strand, within LRK54_RS04095at 864.899 kb on - strand, within LRK54_RS04095at 864.899 kb on - strand, within LRK54_RS04095at 864.899 kb on - strand, within LRK54_RS04095at 864.934 kb on + strand, within LRK54_RS04095at 864.934 kb on + strand, within LRK54_RS04095at 864.934 kb on + strand, within LRK54_RS04095at 864.934 kb on + strand, within LRK54_RS04095at 864.934 kb on + strand, within LRK54_RS04095at 864.934 kb on + strand, within LRK54_RS04095at 864.934 kb on + strand, within LRK54_RS04095at 864.934 kb on + strand, within LRK54_RS04095at 864.934 kb on + strand, within LRK54_RS04095at 864.935 kb on - strand, within LRK54_RS04095at 864.935 kb on - strand, within LRK54_RS04095at 864.935 kb on - strand, within LRK54_RS04095at 864.935 kb on - strand, within LRK54_RS04095at 864.935 kb on - strand, within LRK54_RS04095at 864.935 kb on - strand, within LRK54_RS04095at 864.935 kb on - strand, within LRK54_RS04095at 864.935 kb on - strand, within LRK54_RS04095at 864.935 kb on - strand, within LRK54_RS04095at 865.090 kb on + strand, within LRK54_RS04095at 865.090 kb on + strand, within LRK54_RS04095at 865.090 kb on + strand, within LRK54_RS04095at 865.090 kb on + strand, within LRK54_RS04095at 865.090 kb on + strand, within LRK54_RS04095at 865.090 kb on + strand, within LRK54_RS04095at 865.091 kb on - strand, within LRK54_RS04095at 865.091 kb on - strand, within LRK54_RS04095at 865.091 kb on - strand, within LRK54_RS04095at 865.177 kb on - strand, within LRK54_RS04095at 865.383 kb on + strandat 865.383 kb on + strandat 865.383 kb on + strandat 865.383 kb on + strandat 865.383 kb on + strandat 865.383 kb on + strandat 865.383 kb on + strandat 865.383 kb on + strandat 865.383 kb on + strandat 865.383 kb on + strandat 865.384 kb on - strandat 865.384 kb on - strandat 865.384 kb on - strandat 865.384 kb on - strandat 865.384 kb on - strandat 865.384 kb on - strandat 865.384 kb on - strandat 865.384 kb on - strandat 865.384 kb on - strandat 865.384 kb on - strandat 865.384 kb on - strandat 865.384 kb on - strandat 865.769 kb on - strand, within LRK54_RS04100at 865.769 kb on - strand, within LRK54_RS04100at 865.769 kb on - strand, within LRK54_RS04100at 866.199 kb on + strandat 866.224 kb on + strandat 866.224 kb on + strandat 866.224 kb on + strandat 866.224 kb on + strandat 866.225 kb on - strandat 866.225 kb on - strandat 866.251 kb on + strandat 866.251 kb on + strandat 866.252 kb on - strandat 866.371 kb on - strand, within LRK54_RS04105at 866.371 kb on - strand, within LRK54_RS04105at 866.371 kb on - strand, within LRK54_RS04105at 866.451 kb on + strand, within LRK54_RS04105at 866.451 kb on + strand, within LRK54_RS04105at 866.451 kb on + strand, within LRK54_RS04105at 866.451 kb on + strand, within LRK54_RS04105at 866.451 kb on + strand, within LRK54_RS04105at 866.451 kb on + strand, within LRK54_RS04105at 866.451 kb on + strand, within LRK54_RS04105at 866.451 kb on + strand, within LRK54_RS04105at 866.451 kb on + strand, within LRK54_RS04105at 866.451 kb on + strand, within LRK54_RS04105at 866.451 kb on + strand, within LRK54_RS04105at 866.452 kb on - strand, within LRK54_RS04105at 866.452 kb on - strand, within LRK54_RS04105at 866.452 kb on - strand, within LRK54_RS04105at 866.452 kb on - strand, within LRK54_RS04105at 866.452 kb on - strand, within LRK54_RS04105at 866.452 kb on - strand, within LRK54_RS04105at 866.452 kb on - strand, within LRK54_RS04105at 866.452 kb on - strand, within LRK54_RS04105at 866.452 kb on - strand, within LRK54_RS04105at 866.452 kb on - strand, within LRK54_RS04105at 866.452 kb on - strand, within LRK54_RS04105at 866.868 kb on + strand, within LRK54_RS04105at 866.868 kb on + strand, within LRK54_RS04105at 866.869 kb on - strand, within LRK54_RS04105at 866.869 kb on - strand, within LRK54_RS04105at 866.952 kb on - strand, within LRK54_RS04105

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X
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864,476 + LRK54_RS04090 0.78 +0.4
864,476 + LRK54_RS04090 0.78 +0.1
864,476 + LRK54_RS04090 0.78 +0.4
864,476 + LRK54_RS04090 0.78 -0.7
864,476 + LRK54_RS04090 0.78 +0.0
864,476 + LRK54_RS04090 0.78 +0.5
864,476 + LRK54_RS04090 0.78 -2.1
864,476 + LRK54_RS04090 0.78 +0.6
864,476 + LRK54_RS04090 0.78 +0.5
864,476 + LRK54_RS04090 0.78 -0.9
864,476 + LRK54_RS04090 0.78 +0.0
864,476 + LRK54_RS04090 0.78 -0.4
864,476 + LRK54_RS04090 0.78 -0.9
864,476 + LRK54_RS04090 0.78 -0.8
864,476 + LRK54_RS04090 0.78 +0.2
864,476 + LRK54_RS04090 0.78 -0.5
864,476 + LRK54_RS04090 0.78 +0.7
864,476 + LRK54_RS04090 0.78 +0.7
864,476 + LRK54_RS04090 0.78 -0.9
864,476 + LRK54_RS04090 0.78 -0.5
864,476 + LRK54_RS04090 0.78 +0.7
864,476 + LRK54_RS04090 0.78 -0.3
864,476 + LRK54_RS04090 0.78 +1.3
864,476 + LRK54_RS04090 0.78 -0.5
864,476 + LRK54_RS04090 0.78 -0.4
864,476 + LRK54_RS04090 0.78 -0.3
864,476 + LRK54_RS04090 0.78 -0.2
864,476 + LRK54_RS04090 0.78 -0.5
864,476 + LRK54_RS04090 0.78 -0.2
864,476 + LRK54_RS04090 0.78 +0.5
864,476 + LRK54_RS04090 0.78 +0.5
864,476 + LRK54_RS04090 0.78 +0.4
864,476 + LRK54_RS04090 0.78 +0.1
864,476 + LRK54_RS04090 0.78 +0.2
864,476 + LRK54_RS04090 0.78 +0.1
864,476 + LRK54_RS04090 0.78 -0.0
864,476 + LRK54_RS04090 0.78 -1.5
864,476 + LRK54_RS04090 0.78 -0.3
864,476 + LRK54_RS04090 0.78 +0.6
864,476 + LRK54_RS04090 0.78 -0.1
864,477 - LRK54_RS04090 0.79 -0.2
864,477 - LRK54_RS04090 0.79 -1.3
864,477 - LRK54_RS04090 0.79 +0.3
864,477 - LRK54_RS04090 0.79 -0.3
864,477 - LRK54_RS04090 0.79 -0.8
864,477 - LRK54_RS04090 0.79 -0.1
864,477 - LRK54_RS04090 0.79 +0.7
864,477 - LRK54_RS04090 0.79 -0.2
864,477 - LRK54_RS04090 0.79 -0.0
864,477 - LRK54_RS04090 0.79 +0.8
864,477 - LRK54_RS04090 0.79 +0.3
864,477 - LRK54_RS04090 0.79 +0.3
864,477 - LRK54_RS04090 0.79 -0.3
864,477 - LRK54_RS04090 0.79 -0.0
864,477 - LRK54_RS04090 0.79 -0.8
864,477 - LRK54_RS04090 0.79 +1.5
864,477 - LRK54_RS04090 0.79 +1.6
864,477 - LRK54_RS04090 0.79 +0.4
864,477 - LRK54_RS04090 0.79 -0.3
864,477 - LRK54_RS04090 0.79 +0.5
864,477 - LRK54_RS04090 0.79 +0.1
864,477 - LRK54_RS04090 0.79 +1.6
864,477 - LRK54_RS04090 0.79 -0.7
864,477 - LRK54_RS04090 0.79 +1.3
864,477 - LRK54_RS04090 0.79 +0.3
864,477 - LRK54_RS04090 0.79 +0.4
864,477 - LRK54_RS04090 0.79 +0.5
864,477 - LRK54_RS04090 0.79 +0.4
864,477 - LRK54_RS04090 0.79 +0.2
864,477 - LRK54_RS04090 0.79 +1.1
864,477 - LRK54_RS04090 0.79 -0.1
864,477 - LRK54_RS04090 0.79 +0.7
864,477 - LRK54_RS04090 0.79 -0.9
864,524 + LRK54_RS04090 0.85 -0.3
864,524 + LRK54_RS04090 0.85 -0.5
864,524 + LRK54_RS04090 0.85 -0.9
864,525 - LRK54_RS04090 0.85 -0.4
864,525 - LRK54_RS04090 0.85 +0.6
864,625 + +0.1
864,625 + -0.2
864,625 + +0.1
864,625 + -0.6
864,625 + +0.5
864,625 + -1.3
864,625 + -0.2
864,625 + -0.6
864,625 + -0.0
864,625 + -0.1
864,625 + +0.9
864,625 + +0.7
864,625 + -0.9
864,625 + -0.0
864,625 + -0.6
864,625 + -0.5
864,625 + +0.3
864,625 + +0.6
864,625 + -0.9
864,625 + +0.6
864,625 + +0.5
864,625 + -1.2
864,626 - +0.2
864,626 - -0.4
864,626 - +0.6
864,626 - +0.9
864,626 - +0.1
864,626 - +1.4
864,626 - -1.2
864,626 - +0.6
864,626 - +0.6
864,626 - +0.1
864,626 - -0.1
864,626 - -0.0
864,626 - -0.7
864,626 - +0.5
864,626 - +1.1
864,626 - +1.7
864,626 - +0.8
864,626 - +0.2
864,626 - -1.3
864,626 - +1.5
864,626 - -0.7
864,626 - -1.0
864,626 - +0.4
864,626 - -0.7
864,626 - +0.5
864,627 - +0.5
864,640 + -0.9
864,640 + +0.3
864,640 + -0.7
864,640 + -0.8
864,640 + -0.6
864,641 - -0.0
864,641 - -0.2
864,641 - -0.9
864,641 - -1.5
864,641 - +0.8
864,641 - -1.0
864,641 - -1.2
864,641 - +3.0
864,641 - +0.2
864,641 - +0.6
864,641 - -0.6
864,641 - +0.6
864,641 - +0.3
864,658 + +0.8
864,658 + +0.7
864,658 + -0.7
864,658 + -0.2
864,658 + +0.2
864,658 + +1.3
864,659 - +1.6
864,659 - +0.5
864,659 - -1.0
864,659 - -0.0
864,659 - +1.0
864,670 + +0.9
864,671 - -0.5
864,898 + LRK54_RS04095 0.27 +0.3
864,898 + LRK54_RS04095 0.27 -2.5
864,898 + LRK54_RS04095 0.27 +0.3
864,898 + LRK54_RS04095 0.27 -0.2
864,898 + LRK54_RS04095 0.27 +0.1
864,898 + LRK54_RS04095 0.27 -0.0
864,899 - LRK54_RS04095 0.27 +0.4
864,899 - LRK54_RS04095 0.27 -0.5
864,899 - LRK54_RS04095 0.27 +0.4
864,899 - LRK54_RS04095 0.27 -1.0
864,899 - LRK54_RS04095 0.27 -0.5
864,899 - LRK54_RS04095 0.27 -0.5
864,934 + LRK54_RS04095 0.33 -0.4
864,934 + LRK54_RS04095 0.33 -0.2
864,934 + LRK54_RS04095 0.33 +0.4
864,934 + LRK54_RS04095 0.33 +2.0
864,934 + LRK54_RS04095 0.33 -0.0
864,934 + LRK54_RS04095 0.33 +0.2
864,934 + LRK54_RS04095 0.33 +1.7
864,934 + LRK54_RS04095 0.33 +1.0
864,934 + LRK54_RS04095 0.33 +0.3
864,935 - LRK54_RS04095 0.33 -0.7
864,935 - LRK54_RS04095 0.33 -0.6
864,935 - LRK54_RS04095 0.33 +0.1
864,935 - LRK54_RS04095 0.33 -0.0
864,935 - LRK54_RS04095 0.33 -0.7
864,935 - LRK54_RS04095 0.33 -1.5
864,935 - LRK54_RS04095 0.33 +0.5
864,935 - LRK54_RS04095 0.33 -0.5
864,935 - LRK54_RS04095 0.33 -0.5
865,090 + LRK54_RS04095 0.58 +1.9
865,090 + LRK54_RS04095 0.58 +0.3
865,090 + LRK54_RS04095 0.58 -1.2
865,090 + LRK54_RS04095 0.58 -0.6
865,090 + LRK54_RS04095 0.58 +0.8
865,090 + LRK54_RS04095 0.58 -0.5
865,091 - LRK54_RS04095 0.59 -0.7
865,091 - LRK54_RS04095 0.59 -0.4
865,091 - LRK54_RS04095 0.59 +1.6
865,177 - LRK54_RS04095 0.73 +0.6
865,383 + +1.3
865,383 + -0.6
865,383 + +0.5
865,383 + -0.4
865,383 + -1.3
865,383 + +0.2
865,383 + -0.2
865,383 + -0.1
865,383 + +0.6
865,383 + -1.6
865,384 - +0.7
865,384 - +0.2
865,384 - -1.0
865,384 - -0.3
865,384 - -1.2
865,384 - -0.5
865,384 - -0.6
865,384 - +0.8
865,384 - -0.1
865,384 - +0.1
865,384 - +0.9
865,384 - -0.3
865,769 - LRK54_RS04100 0.61 -1.2
865,769 - LRK54_RS04100 0.61 +0.4
865,769 - LRK54_RS04100 0.61 +0.9
866,199 + -0.6
866,224 + +1.3
866,224 + +0.3
866,224 + -1.0
866,224 + +0.4
866,225 - -0.6
866,225 - -0.9
866,251 + -1.0
866,251 + -0.5
866,252 - +0.2
866,371 - LRK54_RS04105 0.13 +0.2
866,371 - LRK54_RS04105 0.13 +0.5
866,371 - LRK54_RS04105 0.13 -0.0
866,451 + LRK54_RS04105 0.17 -0.1
866,451 + LRK54_RS04105 0.17 -0.4
866,451 + LRK54_RS04105 0.17 -0.7
866,451 + LRK54_RS04105 0.17 +0.7
866,451 + LRK54_RS04105 0.17 -0.5
866,451 + LRK54_RS04105 0.17 +0.2
866,451 + LRK54_RS04105 0.17 -0.3
866,451 + LRK54_RS04105 0.17 -0.1
866,451 + LRK54_RS04105 0.17 +0.5
866,451 + LRK54_RS04105 0.17 +0.4
866,451 + LRK54_RS04105 0.17 +0.2
866,452 - LRK54_RS04105 0.17 +0.1
866,452 - LRK54_RS04105 0.17 -1.0
866,452 - LRK54_RS04105 0.17 +1.3
866,452 - LRK54_RS04105 0.17 +1.0
866,452 - LRK54_RS04105 0.17 -0.9
866,452 - LRK54_RS04105 0.17 -0.5
866,452 - LRK54_RS04105 0.17 +0.4
866,452 - LRK54_RS04105 0.17 +1.0
866,452 - LRK54_RS04105 0.17 +0.1
866,452 - LRK54_RS04105 0.17 +0.8
866,452 - LRK54_RS04105 0.17 -1.5
866,868 + LRK54_RS04105 0.33 +1.1
866,868 + LRK54_RS04105 0.33 -0.7
866,869 - LRK54_RS04105 0.33 +0.0
866,869 - LRK54_RS04105 0.33 +2.6
866,952 - LRK54_RS04105 0.37 +0.1

Or see this region's nucleotide sequence