Experiment: R2A with FW104 filtrate 0.5 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS03980 and LRK54_RS03985 are separated by 92 nucleotides LRK54_RS03985 and LRK54_RS03990 are separated by 90 nucleotides
LRK54_RS03980: LRK54_RS03980 - thymidylate synthase, at 837,550 to 838,344
_RS03980
LRK54_RS03985: LRK54_RS03985 - TIGR00266 family protein, at 838,437 to 839,450
_RS03985
LRK54_RS03990: LRK54_RS03990 - prolipoprotein diacylglyceryl transferase, at 839,541 to 840,359
_RS03990
Position (kb) 838
839
840 Strain fitness (log2 ratio) -2
-1
0
1
2 at 837.500 kb on + strand at 837.500 kb on + strand at 837.551 kb on + strand at 837.551 kb on + strand at 838.356 kb on - strand at 838.356 kb on - strand at 838.356 kb on - strand at 838.356 kb on - strand at 838.405 kb on + strand at 838.406 kb on - strand at 838.406 kb on - strand at 838.406 kb on - strand at 838.459 kb on - strand at 838.536 kb on + strand at 838.536 kb on + strand at 838.537 kb on - strand at 838.537 kb on - strand at 838.537 kb on - strand at 838.537 kb on - strand at 838.537 kb on - strand at 838.537 kb on - strand at 838.663 kb on - strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.749 kb on + strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.750 kb on - strand, within LRK54_RS03985 at 838.780 kb on + strand, within LRK54_RS03985 at 838.780 kb on + strand, within LRK54_RS03985 at 838.781 kb on - strand, within LRK54_RS03985 at 838.781 kb on - strand, within LRK54_RS03985 at 838.936 kb on - strand, within LRK54_RS03985 at 839.464 kb on + strand at 839.464 kb on + strand at 839.464 kb on + strand at 839.464 kb on + strand at 839.464 kb on + strand at 839.464 kb on + strand at 839.464 kb on + strand at 839.464 kb on + strand at 839.464 kb on + strand at 839.464 kb on + strand at 839.464 kb on + strand at 839.464 kb on + strand at 839.465 kb on - strand at 839.465 kb on - strand at 839.465 kb on - strand at 839.465 kb on - strand at 839.465 kb on - strand at 839.465 kb on - strand at 839.465 kb on - strand at 839.465 kb on - strand at 839.465 kb on - strand at 839.465 kb on - strand at 839.466 kb on - strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.496 kb on + strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.497 kb on - strand at 839.498 kb on + strand at 839.498 kb on + strand at 839.499 kb on - strand at 839.499 kb on - strand at 839.499 kb on - strand at 839.531 kb on + strand at 839.531 kb on + strand at 839.532 kb on - strand at 839.532 kb on - strand at 839.532 kb on - strand at 839.596 kb on - strand at 839.596 kb on - strand at 839.596 kb on - strand at 839.596 kb on - strand at 840.347 kb on - strand at 840.391 kb on + strand at 840.391 kb on + strand at 840.391 kb on + strand at 840.391 kb on + strand at 840.392 kb on - strand at 840.445 kb on + strand at 840.445 kb on + strand at 840.445 kb on + strand at 840.445 kb on + strand at 840.445 kb on + strand at 840.446 kb on - strand at 840.446 kb on - strand at 840.446 kb on - strand at 840.446 kb on - strand at 840.446 kb on - strand at 840.446 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X remove 837,500 + -1.8 837,500 + -0.3 837,551 + +0.4 837,551 + +0.4 838,356 - +0.2 838,356 - -0.4 838,356 - +0.3 838,356 - -0.3 838,405 + -0.7 838,406 - +0.3 838,406 - +1.3 838,406 - -1.0 838,459 - -0.5 838,536 + +2.3 838,536 + +2.3 838,537 - +1.4 838,537 - +0.4 838,537 - +1.3 838,537 - +0.0 838,537 - -0.5 838,537 - +0.2 838,663 - LRK54_RS03985 0.22 +0.9 838,749 + LRK54_RS03985 0.31 +0.4 838,749 + LRK54_RS03985 0.31 +0.7 838,749 + LRK54_RS03985 0.31 +0.0 838,749 + LRK54_RS03985 0.31 -0.4 838,749 + LRK54_RS03985 0.31 +0.8 838,749 + LRK54_RS03985 0.31 +0.3 838,749 + LRK54_RS03985 0.31 +0.1 838,749 + LRK54_RS03985 0.31 +0.2 838,749 + LRK54_RS03985 0.31 +0.9 838,749 + LRK54_RS03985 0.31 -0.1 838,749 + LRK54_RS03985 0.31 -0.1 838,749 + LRK54_RS03985 0.31 +1.3 838,749 + LRK54_RS03985 0.31 -0.8 838,749 + LRK54_RS03985 0.31 +0.7 838,749 + LRK54_RS03985 0.31 +0.5 838,750 - LRK54_RS03985 0.31 -0.3 838,750 - LRK54_RS03985 0.31 -0.3 838,750 - LRK54_RS03985 0.31 +1.0 838,750 - LRK54_RS03985 0.31 +0.2 838,750 - LRK54_RS03985 0.31 -0.3 838,750 - LRK54_RS03985 0.31 +1.0 838,750 - LRK54_RS03985 0.31 +0.9 838,750 - LRK54_RS03985 0.31 +1.0 838,750 - LRK54_RS03985 0.31 +1.7 838,750 - LRK54_RS03985 0.31 +0.1 838,750 - LRK54_RS03985 0.31 +1.5 838,750 - LRK54_RS03985 0.31 +0.1 838,750 - LRK54_RS03985 0.31 +1.2 838,780 + LRK54_RS03985 0.34 -1.1 838,780 + LRK54_RS03985 0.34 +2.0 838,781 - LRK54_RS03985 0.34 -0.7 838,781 - LRK54_RS03985 0.34 +2.6 838,936 - LRK54_RS03985 0.49 +0.5 839,464 + -0.2 839,464 + -0.1 839,464 + +0.3 839,464 + +1.0 839,464 + -0.2 839,464 + -1.6 839,464 + +1.2 839,464 + +0.4 839,464 + -0.1 839,464 + +0.1 839,464 + +0.1 839,464 + -0.7 839,465 - -1.0 839,465 - -0.1 839,465 - -1.0 839,465 - +0.4 839,465 - +0.3 839,465 - -0.9 839,465 - -0.8 839,465 - -0.5 839,465 - +0.5 839,465 - +0.6 839,466 - +1.1 839,496 + -2.6 839,496 + -0.1 839,496 + +0.0 839,496 + +1.5 839,496 + -0.1 839,496 + +1.6 839,496 + +0.5 839,496 + -0.5 839,496 + -0.0 839,496 + -0.5 839,496 + +0.6 839,496 + -1.1 839,496 + +0.2 839,496 + -0.1 839,496 + +0.1 839,496 + -0.3 839,496 + +0.2 839,496 + +0.2 839,496 + -0.1 839,496 + +0.4 839,496 + -0.1 839,496 + +0.1 839,496 + +1.3 839,496 + -0.4 839,496 + +0.1 839,496 + -1.0 839,497 - +0.3 839,497 - +0.1 839,497 - -0.0 839,497 - +0.3 839,497 - +0.1 839,497 - -1.4 839,497 - -1.4 839,497 - +0.0 839,497 - -1.1 839,497 - -0.1 839,497 - +0.3 839,497 - -0.5 839,497 - -0.5 839,497 - +0.2 839,497 - -1.1 839,497 - -0.0 839,497 - -0.1 839,497 - -0.0 839,497 - +0.2 839,497 - -0.7 839,498 + -0.3 839,498 + -0.0 839,499 - -0.2 839,499 - +1.3 839,499 - +0.4 839,531 + +0.2 839,531 + -0.8 839,532 - -0.8 839,532 - -1.8 839,532 - -0.0 839,596 - +0.3 839,596 - -0.3 839,596 - -2.5 839,596 - -0.4 840,347 - -0.5 840,391 + +0.3 840,391 + +0.7 840,391 + +1.3 840,391 + -0.6 840,392 - -0.5 840,445 + -0.7 840,445 + -1.4 840,445 + +0.4 840,445 + -0.4 840,445 + -0.7 840,446 - +0.6 840,446 - +0.7 840,446 - +0.4 840,446 - +0.3 840,446 - +0.3 840,446 - +0.6
Or see this region's nucleotide sequence