Experiment: R2A with FW104 filtrate 0.5 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS03185 and LRK54_RS03190 are separated by 127 nucleotides LRK54_RS03190 and LRK54_RS03195 are separated by 51 nucleotides LRK54_RS03195 and LRK54_RS03200 overlap by 20 nucleotides LRK54_RS03200 and LRK54_RS03205 are separated by 1 nucleotides
LRK54_RS03185: LRK54_RS03185 - phosphoglycerate dehydrogenase, at 686,354 to 687,586
_RS03185
LRK54_RS03190: LRK54_RS03190 - tRNA-Pro, at 687,714 to 687,790
_RS03190
LRK54_RS03195: LRK54_RS03195 - MerR family transcriptional regulator, at 687,842 to 688,198
_RS03195
LRK54_RS03200: LRK54_RS03200 - integration host factor subunit alpha, at 688,179 to 688,478
_RS03200
LRK54_RS03205: LRK54_RS03205 - phenylalanine--tRNA ligase subunit beta, at 688,480 to 690,858
_RS03205
Position (kb) 688
689 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 687.293 kb on + strand, within LRK54_RS03185 at 687.294 kb on - strand, within LRK54_RS03185 at 687.294 kb on - strand, within LRK54_RS03185 at 687.294 kb on - strand, within LRK54_RS03185 at 687.485 kb on + strand at 687.485 kb on + strand at 687.486 kb on - strand at 687.486 kb on - strand at 687.486 kb on - strand at 687.486 kb on - strand at 687.486 kb on - strand at 687.486 kb on - strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.794 kb on - strand at 687.794 kb on - strand at 687.794 kb on - strand at 687.812 kb on + strand at 687.812 kb on + strand at 687.813 kb on - strand at 687.813 kb on - strand at 687.813 kb on - strand at 687.813 kb on - strand at 688.199 kb on - strand at 688.199 kb on - strand at 688.199 kb on - strand at 688.199 kb on - strand at 688.199 kb on - strand at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.390 kb on + strand, within LRK54_RS03200 at 688.390 kb on + strand, within LRK54_RS03200 at 688.390 kb on + strand, within LRK54_RS03200 at 688.391 kb on - strand, within LRK54_RS03200 at 688.391 kb on - strand, within LRK54_RS03200 at 688.391 kb on - strand, within LRK54_RS03200 at 688.391 kb on - strand, within LRK54_RS03200 at 688.391 kb on - strand, within LRK54_RS03200
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X remove 687,293 + LRK54_RS03185 0.76 -0.9 687,294 - LRK54_RS03185 0.76 -0.2 687,294 - LRK54_RS03185 0.76 +1.2 687,294 - LRK54_RS03185 0.76 +2.9 687,485 + -0.7 687,485 + +1.7 687,486 - -0.5 687,486 - -0.5 687,486 - +0.0 687,486 - -0.6 687,486 - +1.1 687,486 - -1.1 687,581 + -1.3 687,581 + +1.9 687,581 + +0.7 687,581 + +1.3 687,581 + +0.5 687,581 + +1.3 687,581 + -1.7 687,581 + -0.4 687,581 + -0.2 687,581 + -0.5 687,581 + -0.3 687,581 + +0.7 687,581 + -0.9 687,581 + -0.8 687,581 + -0.7 687,581 + -0.5 687,581 + -1.2 687,581 + +0.5 687,581 + -1.4 687,581 + +0.7 687,581 + -0.5 687,581 + +0.7 687,581 + +0.6 687,581 + +0.6 687,581 + -1.4 687,581 + -1.8 687,581 + +0.1 687,581 + -0.7 687,581 + -2.3 687,581 + -0.9 687,581 + -1.5 687,581 + -0.9 687,581 + -1.0 687,581 + +0.3 687,581 + -0.1 687,581 + -1.2 687,581 + +0.3 687,581 + -0.3 687,581 + -0.7 687,582 - -0.5 687,582 - -0.9 687,582 - -0.7 687,582 - -0.4 687,582 - -0.1 687,582 - -1.5 687,582 - -1.8 687,582 - +1.4 687,582 - +0.5 687,582 - -0.5 687,582 - +1.6 687,582 - -1.4 687,582 - +0.3 687,582 - +1.4 687,582 - +1.1 687,582 - -2.1 687,582 - -0.3 687,582 - +1.4 687,582 - +2.3 687,582 - -0.3 687,582 - -0.1 687,582 - -0.6 687,582 - -0.8 687,582 - -1.1 687,582 - +1.0 687,582 - -0.9 687,582 - +1.0 687,582 - -0.5 687,582 - -0.5 687,582 - -0.7 687,582 - +0.7 687,794 - -1.4 687,794 - +0.4 687,794 - +1.3 687,812 + -0.5 687,812 + -1.6 687,813 - -0.2 687,813 - -0.7 687,813 - +0.2 687,813 - -0.4 688,199 - -0.8 688,199 - +0.1 688,199 - -0.0 688,199 - +1.0 688,199 - -0.9 688,212 + LRK54_RS03200 0.11 -2.0 688,212 + LRK54_RS03200 0.11 -1.6 688,212 + LRK54_RS03200 0.11 -1.0 688,212 + LRK54_RS03200 0.11 -0.7 688,212 + LRK54_RS03200 0.11 -1.3 688,212 + LRK54_RS03200 0.11 -1.5 688,212 + LRK54_RS03200 0.11 -0.7 688,212 + LRK54_RS03200 0.11 -1.2 688,212 + LRK54_RS03200 0.11 -1.6 688,212 + LRK54_RS03200 0.11 -0.3 688,212 + LRK54_RS03200 0.11 -0.5 688,212 + LRK54_RS03200 0.11 +0.7 688,212 + LRK54_RS03200 0.11 -2.0 688,213 - LRK54_RS03200 0.11 +0.7 688,213 - LRK54_RS03200 0.11 -0.0 688,213 - LRK54_RS03200 0.11 -0.5 688,213 - LRK54_RS03200 0.11 -0.4 688,213 - LRK54_RS03200 0.11 +0.1 688,213 - LRK54_RS03200 0.11 +0.1 688,213 - LRK54_RS03200 0.11 -0.8 688,213 - LRK54_RS03200 0.11 -0.4 688,213 - LRK54_RS03200 0.11 -0.3 688,213 - LRK54_RS03200 0.11 +1.0 688,213 - LRK54_RS03200 0.11 -1.4 688,213 - LRK54_RS03200 0.11 -0.3 688,213 - LRK54_RS03200 0.11 -1.3 688,213 - LRK54_RS03200 0.11 +0.2 688,213 - LRK54_RS03200 0.11 +0.7 688,213 - LRK54_RS03200 0.11 +0.5 688,213 - LRK54_RS03200 0.11 -1.3 688,213 - LRK54_RS03200 0.11 -0.5 688,213 - LRK54_RS03200 0.11 -0.5 688,213 - LRK54_RS03200 0.11 -2.7 688,213 - LRK54_RS03200 0.11 -1.6 688,213 - LRK54_RS03200 0.11 +0.3 688,213 - LRK54_RS03200 0.11 +1.1 688,213 - LRK54_RS03200 0.11 -0.8 688,390 + LRK54_RS03200 0.70 -1.2 688,390 + LRK54_RS03200 0.70 -1.0 688,390 + LRK54_RS03200 0.70 +0.7 688,391 - LRK54_RS03200 0.71 +0.9 688,391 - LRK54_RS03200 0.71 +0.7 688,391 - LRK54_RS03200 0.71 -0.0 688,391 - LRK54_RS03200 0.71 -1.4 688,391 - LRK54_RS03200 0.71 -1.5
Or see this region's nucleotide sequence