Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS02970

Experiment: R2A with FW104 filtrate 0.5 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS02960 and LRK54_RS02965 are separated by 5 nucleotidesLRK54_RS02965 and LRK54_RS02970 overlap by 4 nucleotidesLRK54_RS02970 and LRK54_RS02975 are separated by 67 nucleotidesLRK54_RS02975 and LRK54_RS02980 overlap by 1 nucleotides LRK54_RS02960: LRK54_RS02960 - ABC transporter permease, at 638,112 to 639,242 _RS02960 LRK54_RS02965: LRK54_RS02965 - ABC transporter ATP-binding protein, at 639,248 to 640,000 _RS02965 LRK54_RS02970: LRK54_RS02970 - HlyD family efflux transporter periplasmic adaptor subunit, at 639,997 to 640,968 _RS02970 LRK54_RS02975: LRK54_RS02975 - alpha/beta fold hydrolase, at 641,036 to 641,872 _RS02975 LRK54_RS02980: LRK54_RS02980 - EamA family transporter, at 641,872 to 642,252 _RS02980 Position (kb) 639 640 641Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 639.240 kb on + strandat 639.240 kb on + strandat 639.240 kb on + strandat 639.241 kb on - strandat 639.854 kb on - strand, within LRK54_RS02965at 639.941 kb on - strandat 640.150 kb on + strand, within LRK54_RS02970at 640.150 kb on + strand, within LRK54_RS02970at 640.546 kb on + strand, within LRK54_RS02970at 640.547 kb on - strand, within LRK54_RS02970at 640.547 kb on - strand, within LRK54_RS02970at 640.804 kb on + strand, within LRK54_RS02970at 640.804 kb on + strand, within LRK54_RS02970at 640.804 kb on + strand, within LRK54_RS02970at 640.804 kb on + strand, within LRK54_RS02970at 640.805 kb on - strand, within LRK54_RS02970at 640.805 kb on - strand, within LRK54_RS02970at 640.805 kb on - strand, within LRK54_RS02970at 641.011 kb on + strandat 641.011 kb on + strandat 641.011 kb on + strandat 641.011 kb on + strandat 641.012 kb on - strandat 641.012 kb on - strandat 641.012 kb on - strandat 641.012 kb on - strandat 641.012 kb on - strandat 641.234 kb on + strand, within LRK54_RS02975at 641.234 kb on + strand, within LRK54_RS02975at 641.234 kb on + strand, within LRK54_RS02975at 641.234 kb on + strand, within LRK54_RS02975at 641.234 kb on + strand, within LRK54_RS02975at 641.234 kb on + strand, within LRK54_RS02975at 641.235 kb on - strand, within LRK54_RS02975at 641.235 kb on - strand, within LRK54_RS02975at 641.235 kb on - strand, within LRK54_RS02975at 641.235 kb on - strand, within LRK54_RS02975at 641.235 kb on - strand, within LRK54_RS02975at 641.235 kb on - strand, within LRK54_RS02975at 641.235 kb on - strand, within LRK54_RS02975at 641.235 kb on - strand, within LRK54_RS02975at 641.235 kb on - strand, within LRK54_RS02975at 641.235 kb on - strand, within LRK54_RS02975at 641.235 kb on - strand, within LRK54_RS02975at 641.235 kb on - strand, within LRK54_RS02975at 641.372 kb on + strand, within LRK54_RS02975at 641.372 kb on + strand, within LRK54_RS02975at 641.372 kb on + strand, within LRK54_RS02975at 641.373 kb on - strand, within LRK54_RS02975at 641.373 kb on - strand, within LRK54_RS02975at 641.390 kb on + strand, within LRK54_RS02975at 641.495 kb on + strand, within LRK54_RS02975at 641.495 kb on + strand, within LRK54_RS02975at 641.588 kb on + strand, within LRK54_RS02975at 641.588 kb on + strand, within LRK54_RS02975at 641.588 kb on + strand, within LRK54_RS02975at 641.588 kb on + strand, within LRK54_RS02975at 641.589 kb on - strand, within LRK54_RS02975at 641.589 kb on - strand, within LRK54_RS02975at 641.589 kb on - strand, within LRK54_RS02975at 641.606 kb on + strand, within LRK54_RS02975at 641.606 kb on + strand, within LRK54_RS02975at 641.606 kb on + strand, within LRK54_RS02975at 641.606 kb on + strand, within LRK54_RS02975at 641.606 kb on + strand, within LRK54_RS02975at 641.606 kb on + strand, within LRK54_RS02975at 641.606 kb on + strand, within LRK54_RS02975at 641.606 kb on + strand, within LRK54_RS02975at 641.606 kb on + strand, within LRK54_RS02975at 641.607 kb on - strand, within LRK54_RS02975at 641.607 kb on - strand, within LRK54_RS02975at 641.607 kb on - strand, within LRK54_RS02975at 641.607 kb on - strand, within LRK54_RS02975at 641.607 kb on - strand, within LRK54_RS02975at 641.607 kb on - strand, within LRK54_RS02975at 641.607 kb on - strand, within LRK54_RS02975at 641.607 kb on - strand, within LRK54_RS02975at 641.607 kb on - strand, within LRK54_RS02975at 641.607 kb on - strand, within LRK54_RS02975at 641.607 kb on - strand, within LRK54_RS02975at 641.661 kb on + strand, within LRK54_RS02975at 641.661 kb on + strand, within LRK54_RS02975at 641.661 kb on + strand, within LRK54_RS02975at 641.661 kb on + strand, within LRK54_RS02975at 641.661 kb on + strand, within LRK54_RS02975at 641.661 kb on + strand, within LRK54_RS02975at 641.661 kb on + strand, within LRK54_RS02975at 641.662 kb on - strand, within LRK54_RS02975at 641.662 kb on - strand, within LRK54_RS02975at 641.765 kb on + strand, within LRK54_RS02975at 641.765 kb on + strand, within LRK54_RS02975at 641.765 kb on + strand, within LRK54_RS02975at 641.765 kb on + strand, within LRK54_RS02975at 641.765 kb on + strand, within LRK54_RS02975at 641.765 kb on + strand, within LRK54_RS02975at 641.765 kb on + strand, within LRK54_RS02975at 641.765 kb on + strand, within LRK54_RS02975at 641.765 kb on + strand, within LRK54_RS02975at 641.765 kb on + strand, within LRK54_RS02975at 641.765 kb on + strand, within LRK54_RS02975at 641.765 kb on + strand, within LRK54_RS02975at 641.765 kb on + strand, within LRK54_RS02975at 641.765 kb on + strand, within LRK54_RS02975at 641.765 kb on + strand, within LRK54_RS02975at 641.765 kb on + strand, within LRK54_RS02975at 641.765 kb on + strand, within LRK54_RS02975at 641.765 kb on + strand, within LRK54_RS02975at 641.765 kb on + strand, within LRK54_RS02975at 641.765 kb on + strand, within LRK54_RS02975at 641.765 kb on + strand, within LRK54_RS02975at 641.765 kb on + strand, within LRK54_RS02975at 641.766 kb on - strand, within LRK54_RS02975at 641.766 kb on - strand, within LRK54_RS02975at 641.766 kb on - strand, within LRK54_RS02975at 641.766 kb on - strand, within LRK54_RS02975at 641.766 kb on - strand, within LRK54_RS02975at 641.766 kb on - strand, within LRK54_RS02975at 641.766 kb on - strand, within LRK54_RS02975at 641.766 kb on - strand, within LRK54_RS02975at 641.766 kb on - strand, within LRK54_RS02975at 641.766 kb on - strand, within LRK54_RS02975at 641.766 kb on - strand, within LRK54_RS02975at 641.766 kb on - strand, within LRK54_RS02975at 641.766 kb on - strand, within LRK54_RS02975at 641.766 kb on - strand, within LRK54_RS02975at 641.766 kb on - strand, within LRK54_RS02975at 641.766 kb on - strand, within LRK54_RS02975at 641.766 kb on - strand, within LRK54_RS02975at 641.766 kb on - strand, within LRK54_RS02975at 641.766 kb on - strand, within LRK54_RS02975at 641.766 kb on - strand, within LRK54_RS02975at 641.766 kb on - strand, within LRK54_RS02975

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X
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639,240 + -0.2
639,240 + +2.3
639,240 + -1.4
639,241 - +0.1
639,854 - LRK54_RS02965 0.80 -0.3
639,941 - -0.9
640,150 + LRK54_RS02970 0.16 +0.5
640,150 + LRK54_RS02970 0.16 -0.3
640,546 + LRK54_RS02970 0.56 +0.6
640,547 - LRK54_RS02970 0.57 -0.5
640,547 - LRK54_RS02970 0.57 +1.2
640,804 + LRK54_RS02970 0.83 +0.0
640,804 + LRK54_RS02970 0.83 +1.9
640,804 + LRK54_RS02970 0.83 -1.7
640,804 + LRK54_RS02970 0.83 +1.3
640,805 - LRK54_RS02970 0.83 -0.7
640,805 - LRK54_RS02970 0.83 +0.1
640,805 - LRK54_RS02970 0.83 +0.2
641,011 + +0.6
641,011 + +0.1
641,011 + -0.1
641,011 + +0.4
641,012 - -1.6
641,012 - -1.4
641,012 - -0.7
641,012 - -0.4
641,012 - -0.9
641,234 + LRK54_RS02975 0.24 -0.3
641,234 + LRK54_RS02975 0.24 -1.3
641,234 + LRK54_RS02975 0.24 +2.3
641,234 + LRK54_RS02975 0.24 +2.7
641,234 + LRK54_RS02975 0.24 -0.3
641,234 + LRK54_RS02975 0.24 -0.5
641,235 - LRK54_RS02975 0.24 +0.3
641,235 - LRK54_RS02975 0.24 -1.2
641,235 - LRK54_RS02975 0.24 +0.3
641,235 - LRK54_RS02975 0.24 +0.1
641,235 - LRK54_RS02975 0.24 +0.9
641,235 - LRK54_RS02975 0.24 -1.2
641,235 - LRK54_RS02975 0.24 +0.1
641,235 - LRK54_RS02975 0.24 +0.5
641,235 - LRK54_RS02975 0.24 +0.2
641,235 - LRK54_RS02975 0.24 -1.0
641,235 - LRK54_RS02975 0.24 -0.3
641,235 - LRK54_RS02975 0.24 -1.1
641,372 + LRK54_RS02975 0.40 -0.7
641,372 + LRK54_RS02975 0.40 +0.8
641,372 + LRK54_RS02975 0.40 +0.8
641,373 - LRK54_RS02975 0.40 -0.3
641,373 - LRK54_RS02975 0.40 +0.8
641,390 + LRK54_RS02975 0.42 +1.4
641,495 + LRK54_RS02975 0.55 -1.5
641,495 + LRK54_RS02975 0.55 -2.7
641,588 + LRK54_RS02975 0.66 -1.0
641,588 + LRK54_RS02975 0.66 +2.0
641,588 + LRK54_RS02975 0.66 -0.5
641,588 + LRK54_RS02975 0.66 -0.2
641,589 - LRK54_RS02975 0.66 -0.6
641,589 - LRK54_RS02975 0.66 -0.1
641,589 - LRK54_RS02975 0.66 +0.2
641,606 + LRK54_RS02975 0.68 +0.2
641,606 + LRK54_RS02975 0.68 -0.0
641,606 + LRK54_RS02975 0.68 -0.4
641,606 + LRK54_RS02975 0.68 -0.1
641,606 + LRK54_RS02975 0.68 -1.6
641,606 + LRK54_RS02975 0.68 +0.2
641,606 + LRK54_RS02975 0.68 -1.3
641,606 + LRK54_RS02975 0.68 +0.7
641,606 + LRK54_RS02975 0.68 +0.0
641,607 - LRK54_RS02975 0.68 -0.0
641,607 - LRK54_RS02975 0.68 +0.7
641,607 - LRK54_RS02975 0.68 +2.3
641,607 - LRK54_RS02975 0.68 -0.4
641,607 - LRK54_RS02975 0.68 -0.3
641,607 - LRK54_RS02975 0.68 -0.3
641,607 - LRK54_RS02975 0.68 -0.4
641,607 - LRK54_RS02975 0.68 +0.7
641,607 - LRK54_RS02975 0.68 +0.3
641,607 - LRK54_RS02975 0.68 +0.5
641,607 - LRK54_RS02975 0.68 -1.4
641,661 + LRK54_RS02975 0.75 +0.3
641,661 + LRK54_RS02975 0.75 -1.3
641,661 + LRK54_RS02975 0.75 +0.2
641,661 + LRK54_RS02975 0.75 -0.9
641,661 + LRK54_RS02975 0.75 -0.0
641,661 + LRK54_RS02975 0.75 +0.7
641,661 + LRK54_RS02975 0.75 -0.2
641,662 - LRK54_RS02975 0.75 -0.7
641,662 - LRK54_RS02975 0.75 -0.7
641,765 + LRK54_RS02975 0.87 +0.4
641,765 + LRK54_RS02975 0.87 +0.5
641,765 + LRK54_RS02975 0.87 +1.6
641,765 + LRK54_RS02975 0.87 -0.2
641,765 + LRK54_RS02975 0.87 -0.1
641,765 + LRK54_RS02975 0.87 -0.1
641,765 + LRK54_RS02975 0.87 +1.3
641,765 + LRK54_RS02975 0.87 -0.5
641,765 + LRK54_RS02975 0.87 -0.0
641,765 + LRK54_RS02975 0.87 +0.6
641,765 + LRK54_RS02975 0.87 -0.5
641,765 + LRK54_RS02975 0.87 -0.4
641,765 + LRK54_RS02975 0.87 +0.3
641,765 + LRK54_RS02975 0.87 +0.3
641,765 + LRK54_RS02975 0.87 +0.7
641,765 + LRK54_RS02975 0.87 +0.4
641,765 + LRK54_RS02975 0.87 +1.3
641,765 + LRK54_RS02975 0.87 +0.1
641,765 + LRK54_RS02975 0.87 +2.3
641,765 + LRK54_RS02975 0.87 -2.9
641,765 + LRK54_RS02975 0.87 +0.1
641,765 + LRK54_RS02975 0.87 -0.2
641,766 - LRK54_RS02975 0.87 -0.6
641,766 - LRK54_RS02975 0.87 +1.9
641,766 - LRK54_RS02975 0.87 +0.4
641,766 - LRK54_RS02975 0.87 -0.8
641,766 - LRK54_RS02975 0.87 +0.7
641,766 - LRK54_RS02975 0.87 +1.5
641,766 - LRK54_RS02975 0.87 +0.4
641,766 - LRK54_RS02975 0.87 +0.6
641,766 - LRK54_RS02975 0.87 +2.3
641,766 - LRK54_RS02975 0.87 -0.8
641,766 - LRK54_RS02975 0.87 +0.3
641,766 - LRK54_RS02975 0.87 -1.0
641,766 - LRK54_RS02975 0.87 +0.3
641,766 - LRK54_RS02975 0.87 +0.3
641,766 - LRK54_RS02975 0.87 -0.1
641,766 - LRK54_RS02975 0.87 -0.0
641,766 - LRK54_RS02975 0.87 +1.1
641,766 - LRK54_RS02975 0.87 +0.4
641,766 - LRK54_RS02975 0.87 +0.2
641,766 - LRK54_RS02975 0.87 -1.6
641,766 - LRK54_RS02975 0.87 +0.2

Or see this region's nucleotide sequence