Experiment: R2A with FW104 filtrate 0.5 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS02685 and LRK54_RS02690 overlap by 4 nucleotides LRK54_RS02690 and LRK54_RS02695 are separated by 21 nucleotides LRK54_RS02695 and LRK54_RS02700 are separated by 14 nucleotides LRK54_RS02700 and LRK54_RS02705 are separated by 106 nucleotides
LRK54_RS02685: LRK54_RS02685 - Maf family nucleotide pyrophosphatase, at 577,128 to 577,715
_RS02685
LRK54_RS02690: LRK54_RS02690 - GNAT family N-acetyltransferase, at 577,712 to 578,161
_RS02690
LRK54_RS02695: LRK54_RS02695 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 578,183 to 578,653
_RS02695
LRK54_RS02700: LRK54_RS02700 - ribosome silencing factor, at 578,668 to 579,054
_RS02700
LRK54_RS02705: LRK54_RS02705 - nitronate monooxygenase, at 579,161 to 580,228
_RS02705
Position (kb) 578
579
580 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 577.699 kb on + strand at 577.699 kb on + strand at 577.699 kb on + strand at 577.699 kb on + strand at 577.699 kb on + strand at 577.699 kb on + strand at 577.700 kb on - strand at 577.700 kb on - strand at 577.700 kb on - strand at 577.700 kb on - strand at 577.700 kb on - strand at 577.700 kb on - strand at 577.700 kb on - strand at 577.700 kb on - strand at 577.728 kb on + strand at 577.728 kb on + strand at 577.728 kb on + strand at 577.729 kb on - strand at 577.729 kb on - strand at 577.729 kb on - strand at 577.729 kb on - strand at 577.729 kb on - strand at 577.743 kb on + strand at 577.744 kb on - strand at 577.744 kb on - strand at 577.744 kb on - strand at 577.744 kb on - strand at 577.744 kb on - strand at 577.770 kb on + strand, within LRK54_RS02690 at 577.770 kb on + strand, within LRK54_RS02690 at 577.770 kb on + strand, within LRK54_RS02690 at 577.770 kb on + strand, within LRK54_RS02690 at 577.771 kb on - strand, within LRK54_RS02690 at 577.771 kb on - strand, within LRK54_RS02690 at 577.771 kb on - strand, within LRK54_RS02690 at 577.771 kb on - strand, within LRK54_RS02690 at 577.771 kb on - strand, within LRK54_RS02690 at 577.959 kb on + strand, within LRK54_RS02690 at 577.959 kb on + strand, within LRK54_RS02690 at 577.959 kb on + strand, within LRK54_RS02690 at 577.960 kb on - strand, within LRK54_RS02690 at 577.960 kb on - strand, within LRK54_RS02690 at 577.960 kb on - strand, within LRK54_RS02690 at 577.960 kb on - strand, within LRK54_RS02690 at 577.960 kb on - strand, within LRK54_RS02690 at 577.960 kb on - strand, within LRK54_RS02690 at 578.082 kb on + strand, within LRK54_RS02690 at 578.082 kb on + strand, within LRK54_RS02690 at 578.082 kb on + strand, within LRK54_RS02690 at 578.082 kb on + strand, within LRK54_RS02690 at 578.083 kb on - strand, within LRK54_RS02690 at 578.083 kb on - strand, within LRK54_RS02690 at 578.083 kb on - strand, within LRK54_RS02690 at 578.083 kb on - strand, within LRK54_RS02690 at 578.083 kb on - strand, within LRK54_RS02690 at 578.083 kb on - strand, within LRK54_RS02690 at 578.196 kb on + strand at 578.196 kb on + strand at 578.196 kb on + strand at 578.196 kb on + strand at 578.196 kb on + strand at 578.196 kb on + strand at 578.197 kb on - strand at 578.229 kb on + strand at 578.229 kb on + strand at 578.229 kb on + strand at 578.229 kb on + strand at 578.229 kb on + strand at 578.229 kb on + strand at 578.230 kb on - strand, within LRK54_RS02695 at 578.230 kb on - strand, within LRK54_RS02695 at 578.230 kb on - strand, within LRK54_RS02695 at 578.230 kb on - strand, within LRK54_RS02695 at 578.230 kb on - strand, within LRK54_RS02695 at 578.230 kb on - strand, within LRK54_RS02695 at 578.230 kb on - strand, within LRK54_RS02695 at 578.586 kb on + strand, within LRK54_RS02695 at 578.735 kb on + strand, within LRK54_RS02700 at 578.735 kb on + strand, within LRK54_RS02700 at 578.735 kb on + strand, within LRK54_RS02700 at 578.735 kb on + strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 579.016 kb on - strand at 579.039 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.106 kb on + strand at 579.106 kb on + strand at 579.106 kb on + strand at 579.106 kb on + strand at 579.107 kb on - strand at 579.107 kb on - strand at 579.107 kb on - strand at 579.107 kb on - strand at 579.107 kb on - strand at 579.107 kb on - strand at 579.107 kb on - strand at 579.192 kb on + strand at 579.193 kb on - strand at 579.342 kb on + strand, within LRK54_RS02705 at 579.343 kb on - strand, within LRK54_RS02705 at 579.835 kb on + strand, within LRK54_RS02705 at 579.835 kb on + strand, within LRK54_RS02705 at 579.835 kb on + strand, within LRK54_RS02705 at 579.835 kb on + strand, within LRK54_RS02705 at 579.835 kb on + strand, within LRK54_RS02705 at 579.835 kb on + strand, within LRK54_RS02705 at 579.836 kb on - strand, within LRK54_RS02705 at 579.836 kb on - strand, within LRK54_RS02705 at 579.836 kb on - strand, within LRK54_RS02705 at 579.836 kb on - strand, within LRK54_RS02705 at 579.836 kb on - strand, within LRK54_RS02705 at 579.836 kb on - strand, within LRK54_RS02705 at 580.032 kb on + strand, within LRK54_RS02705 at 580.032 kb on + strand, within LRK54_RS02705 at 580.032 kb on + strand, within LRK54_RS02705 at 580.032 kb on + strand, within LRK54_RS02705 at 580.032 kb on + strand, within LRK54_RS02705 at 580.032 kb on + strand, within LRK54_RS02705 at 580.033 kb on - strand, within LRK54_RS02705 at 580.033 kb on - strand, within LRK54_RS02705 at 580.033 kb on - strand, within LRK54_RS02705 at 580.033 kb on - strand, within LRK54_RS02705 at 580.033 kb on - strand, within LRK54_RS02705
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X remove 577,699 + +0.4 577,699 + +0.2 577,699 + -2.0 577,699 + +0.1 577,699 + +0.5 577,699 + +0.8 577,700 - -0.8 577,700 - -1.0 577,700 - +0.7 577,700 - -1.4 577,700 - -0.4 577,700 - +0.3 577,700 - -0.5 577,700 - -0.4 577,728 + +0.1 577,728 + +0.2 577,728 + -1.4 577,729 - +1.3 577,729 - -1.1 577,729 - +0.1 577,729 - -0.8 577,729 - +0.1 577,743 + +0.2 577,744 - +1.1 577,744 - +0.9 577,744 - -0.1 577,744 - +0.9 577,744 - -0.3 577,770 + LRK54_RS02690 0.13 -1.6 577,770 + LRK54_RS02690 0.13 -0.5 577,770 + LRK54_RS02690 0.13 +0.3 577,770 + LRK54_RS02690 0.13 +0.3 577,771 - LRK54_RS02690 0.13 -1.1 577,771 - LRK54_RS02690 0.13 -0.1 577,771 - LRK54_RS02690 0.13 -1.6 577,771 - LRK54_RS02690 0.13 +0.1 577,771 - LRK54_RS02690 0.13 -1.5 577,959 + LRK54_RS02690 0.55 -1.2 577,959 + LRK54_RS02690 0.55 +1.1 577,959 + LRK54_RS02690 0.55 +2.0 577,960 - LRK54_RS02690 0.55 +0.3 577,960 - LRK54_RS02690 0.55 +1.3 577,960 - LRK54_RS02690 0.55 +0.2 577,960 - LRK54_RS02690 0.55 -0.1 577,960 - LRK54_RS02690 0.55 +0.1 577,960 - LRK54_RS02690 0.55 -0.8 578,082 + LRK54_RS02690 0.82 +0.1 578,082 + LRK54_RS02690 0.82 -1.0 578,082 + LRK54_RS02690 0.82 +0.8 578,082 + LRK54_RS02690 0.82 -0.7 578,083 - LRK54_RS02690 0.82 -1.2 578,083 - LRK54_RS02690 0.82 +0.3 578,083 - LRK54_RS02690 0.82 -0.0 578,083 - LRK54_RS02690 0.82 +0.5 578,083 - LRK54_RS02690 0.82 -0.8 578,083 - LRK54_RS02690 0.82 +0.0 578,196 + -1.1 578,196 + -0.3 578,196 + +0.3 578,196 + +0.2 578,196 + +0.7 578,196 + -1.0 578,197 - +0.1 578,229 + -0.1 578,229 + +0.3 578,229 + -1.5 578,229 + +0.3 578,229 + +0.3 578,229 + +0.1 578,230 - LRK54_RS02695 0.10 +1.1 578,230 - LRK54_RS02695 0.10 +0.2 578,230 - LRK54_RS02695 0.10 +0.6 578,230 - LRK54_RS02695 0.10 -0.3 578,230 - LRK54_RS02695 0.10 +0.4 578,230 - LRK54_RS02695 0.10 +0.7 578,230 - LRK54_RS02695 0.10 +1.2 578,586 + LRK54_RS02695 0.86 +0.1 578,735 + LRK54_RS02700 0.17 +1.3 578,735 + LRK54_RS02700 0.17 -1.5 578,735 + LRK54_RS02700 0.17 -0.6 578,735 + LRK54_RS02700 0.17 -0.1 578,736 - LRK54_RS02700 0.18 +1.2 578,736 - LRK54_RS02700 0.18 +0.2 578,736 - LRK54_RS02700 0.18 +0.9 578,736 - LRK54_RS02700 0.18 +0.5 578,736 - LRK54_RS02700 0.18 +1.0 578,736 - LRK54_RS02700 0.18 +0.5 578,736 - LRK54_RS02700 0.18 +1.0 578,736 - LRK54_RS02700 0.18 +0.2 578,736 - LRK54_RS02700 0.18 -0.3 578,736 - LRK54_RS02700 0.18 -0.9 578,736 - LRK54_RS02700 0.18 -1.2 579,016 - -0.0 579,039 + -0.4 579,104 + -0.9 579,104 + +1.1 579,104 + +0.3 579,104 + -1.8 579,104 + -0.3 579,104 + -0.3 579,104 + -1.2 579,104 + -0.3 579,104 + -0.0 579,104 + -0.4 579,104 + -0.1 579,104 + -0.1 579,104 + -1.4 579,104 + +0.2 579,104 + +0.7 579,104 + +0.1 579,104 + +0.5 579,104 + -0.4 579,105 - +1.1 579,105 - -1.0 579,105 - +1.0 579,105 - +0.5 579,105 - +1.2 579,105 - +2.3 579,105 - +0.3 579,105 - -1.4 579,105 - +0.6 579,105 - -0.2 579,105 - -0.6 579,105 - -0.7 579,105 - +0.1 579,105 - +4.6 579,106 + +0.2 579,106 + -0.4 579,106 + -0.5 579,106 + +0.3 579,107 - +0.3 579,107 - -2.0 579,107 - +0.1 579,107 - -0.5 579,107 - +0.2 579,107 - +0.4 579,107 - +0.5 579,192 + -0.9 579,193 - +0.8 579,342 + LRK54_RS02705 0.17 +0.3 579,343 - LRK54_RS02705 0.17 +0.0 579,835 + LRK54_RS02705 0.63 +0.8 579,835 + LRK54_RS02705 0.63 -0.9 579,835 + LRK54_RS02705 0.63 +0.1 579,835 + LRK54_RS02705 0.63 +0.8 579,835 + LRK54_RS02705 0.63 +0.4 579,835 + LRK54_RS02705 0.63 +1.0 579,836 - LRK54_RS02705 0.63 -0.2 579,836 - LRK54_RS02705 0.63 -0.7 579,836 - LRK54_RS02705 0.63 +0.1 579,836 - LRK54_RS02705 0.63 -1.8 579,836 - LRK54_RS02705 0.63 -1.1 579,836 - LRK54_RS02705 0.63 +0.6 580,032 + LRK54_RS02705 0.82 -0.4 580,032 + LRK54_RS02705 0.82 -0.2 580,032 + LRK54_RS02705 0.82 +0.4 580,032 + LRK54_RS02705 0.82 +1.7 580,032 + LRK54_RS02705 0.82 +0.4 580,032 + LRK54_RS02705 0.82 -0.1 580,033 - LRK54_RS02705 0.82 -2.4 580,033 - LRK54_RS02705 0.82 -1.0 580,033 - LRK54_RS02705 0.82 +2.7 580,033 - LRK54_RS02705 0.82 +0.2 580,033 - LRK54_RS02705 0.82 -0.0
Or see this region's nucleotide sequence