Experiment: R2A with FW104 filtrate 0.5 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS02490 and LRK54_RS02495 are separated by 95 nucleotides LRK54_RS02495 and LRK54_RS02500 are separated by 44 nucleotides LRK54_RS02500 and LRK54_RS02505 are separated by 35 nucleotides
LRK54_RS02490: LRK54_RS02490 - EAL domain-containing protein, at 539,465 to 541,507
_RS02490
LRK54_RS02495: LRK54_RS02495 - 50S ribosomal protein L19, at 541,603 to 541,995
_RS02495
LRK54_RS02500: LRK54_RS02500 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 542,040 to 542,813
_RS02500
LRK54_RS02505: LRK54_RS02505 - ribosome maturation factor RimM, at 542,849 to 543,364
_RS02505
Position (kb) 541
542 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 540.783 kb on - strand, within LRK54_RS02490 at 540.783 kb on - strand, within LRK54_RS02490 at 540.833 kb on + strand, within LRK54_RS02490 at 540.833 kb on + strand, within LRK54_RS02490 at 540.833 kb on + strand, within LRK54_RS02490 at 540.833 kb on + strand, within LRK54_RS02490 at 540.833 kb on + strand, within LRK54_RS02490 at 540.833 kb on + strand, within LRK54_RS02490 at 540.833 kb on + strand, within LRK54_RS02490 at 540.833 kb on + strand, within LRK54_RS02490 at 540.833 kb on + strand, within LRK54_RS02490 at 540.833 kb on + strand, within LRK54_RS02490 at 540.833 kb on + strand, within LRK54_RS02490 at 540.834 kb on - strand, within LRK54_RS02490 at 540.834 kb on - strand, within LRK54_RS02490 at 540.834 kb on - strand, within LRK54_RS02490 at 540.834 kb on - strand, within LRK54_RS02490 at 540.834 kb on - strand, within LRK54_RS02490 at 540.834 kb on - strand, within LRK54_RS02490 at 540.834 kb on - strand, within LRK54_RS02490 at 540.875 kb on + strand, within LRK54_RS02490 at 540.875 kb on + strand, within LRK54_RS02490 at 540.876 kb on - strand, within LRK54_RS02490 at 540.876 kb on - strand, within LRK54_RS02490 at 540.876 kb on - strand, within LRK54_RS02490 at 540.984 kb on + strand, within LRK54_RS02490 at 540.985 kb on - strand, within LRK54_RS02490 at 541.295 kb on + strand, within LRK54_RS02490 at 541.295 kb on + strand, within LRK54_RS02490 at 541.295 kb on + strand, within LRK54_RS02490 at 541.295 kb on + strand, within LRK54_RS02490 at 541.295 kb on + strand, within LRK54_RS02490 at 541.295 kb on + strand, within LRK54_RS02490 at 541.295 kb on + strand, within LRK54_RS02490 at 541.296 kb on - strand, within LRK54_RS02490 at 541.296 kb on - strand, within LRK54_RS02490 at 541.296 kb on - strand, within LRK54_RS02490 at 541.296 kb on - strand, within LRK54_RS02490 at 541.296 kb on - strand, within LRK54_RS02490 at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.432 kb on + strand at 541.432 kb on + strand at 541.432 kb on + strand at 541.432 kb on + strand at 541.432 kb on + strand at 541.432 kb on + strand at 541.432 kb on + strand at 541.432 kb on + strand at 541.432 kb on + strand at 541.432 kb on + strand at 541.433 kb on - strand at 541.433 kb on - strand at 541.433 kb on - strand at 541.433 kb on - strand at 541.433 kb on - strand at 541.433 kb on - strand at 541.433 kb on - strand at 541.433 kb on - strand at 541.433 kb on - strand at 541.433 kb on - strand at 541.433 kb on - strand at 541.433 kb on - strand at 541.505 kb on + strand at 541.505 kb on + strand at 541.505 kb on + strand at 541.506 kb on - strand at 541.506 kb on - strand at 541.604 kb on + strand at 541.604 kb on + strand at 541.605 kb on - strand at 541.605 kb on - strand at 541.605 kb on - strand at 541.605 kb on - strand at 541.605 kb on - strand at 541.700 kb on + strand, within LRK54_RS02495 at 541.700 kb on + strand, within LRK54_RS02495 at 541.700 kb on + strand, within LRK54_RS02495 at 541.700 kb on + strand, within LRK54_RS02495 at 541.700 kb on + strand, within LRK54_RS02495 at 541.700 kb on + strand, within LRK54_RS02495 at 541.700 kb on + strand, within LRK54_RS02495 at 541.700 kb on + strand, within LRK54_RS02495 at 541.700 kb on + strand, within LRK54_RS02495 at 541.700 kb on + strand, within LRK54_RS02495 at 541.700 kb on + strand, within LRK54_RS02495 at 541.700 kb on + strand, within LRK54_RS02495 at 541.701 kb on - strand, within LRK54_RS02495 at 541.701 kb on - strand, within LRK54_RS02495 at 541.701 kb on - strand, within LRK54_RS02495 at 541.701 kb on - strand, within LRK54_RS02495 at 541.701 kb on - strand, within LRK54_RS02495 at 541.701 kb on - strand, within LRK54_RS02495 at 541.701 kb on - strand, within LRK54_RS02495 at 541.701 kb on - strand at 541.701 kb on - strand, within LRK54_RS02495 at 541.703 kb on + strand, within LRK54_RS02495 at 541.703 kb on + strand, within LRK54_RS02495 at 541.703 kb on + strand, within LRK54_RS02495 at 541.703 kb on + strand, within LRK54_RS02495 at 541.703 kb on + strand, within LRK54_RS02495 at 541.703 kb on + strand, within LRK54_RS02495 at 541.703 kb on + strand, within LRK54_RS02495 at 541.704 kb on - strand, within LRK54_RS02495 at 541.704 kb on - strand, within LRK54_RS02495 at 541.704 kb on - strand, within LRK54_RS02495 at 541.704 kb on - strand, within LRK54_RS02495 at 541.704 kb on - strand, within LRK54_RS02495 at 541.704 kb on - strand, within LRK54_RS02495 at 541.704 kb on - strand, within LRK54_RS02495 at 541.704 kb on - strand, within LRK54_RS02495 at 541.704 kb on - strand, within LRK54_RS02495
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X remove 540,783 - LRK54_RS02490 0.65 -0.2 540,783 - LRK54_RS02490 0.65 -0.2 540,833 + LRK54_RS02490 0.67 +2.3 540,833 + LRK54_RS02490 0.67 +1.5 540,833 + LRK54_RS02490 0.67 -0.3 540,833 + LRK54_RS02490 0.67 -0.4 540,833 + LRK54_RS02490 0.67 +1.1 540,833 + LRK54_RS02490 0.67 -0.6 540,833 + LRK54_RS02490 0.67 -0.2 540,833 + LRK54_RS02490 0.67 -0.2 540,833 + LRK54_RS02490 0.67 +0.3 540,833 + LRK54_RS02490 0.67 +1.1 540,833 + LRK54_RS02490 0.67 -0.7 540,834 - LRK54_RS02490 0.67 -0.6 540,834 - LRK54_RS02490 0.67 +0.3 540,834 - LRK54_RS02490 0.67 +0.1 540,834 - LRK54_RS02490 0.67 -0.2 540,834 - LRK54_RS02490 0.67 +0.5 540,834 - LRK54_RS02490 0.67 -1.2 540,834 - LRK54_RS02490 0.67 -0.7 540,875 + LRK54_RS02490 0.69 -1.2 540,875 + LRK54_RS02490 0.69 -0.4 540,876 - LRK54_RS02490 0.69 -1.5 540,876 - LRK54_RS02490 0.69 +0.1 540,876 - LRK54_RS02490 0.69 -1.5 540,984 + LRK54_RS02490 0.74 -1.0 540,985 - LRK54_RS02490 0.74 +1.5 541,295 + LRK54_RS02490 0.90 -0.7 541,295 + LRK54_RS02490 0.90 +0.5 541,295 + LRK54_RS02490 0.90 +0.0 541,295 + LRK54_RS02490 0.90 -0.1 541,295 + LRK54_RS02490 0.90 +0.1 541,295 + LRK54_RS02490 0.90 +0.0 541,295 + LRK54_RS02490 0.90 +0.0 541,296 - LRK54_RS02490 0.90 +0.5 541,296 - LRK54_RS02490 0.90 -0.6 541,296 - LRK54_RS02490 0.90 -0.7 541,296 - LRK54_RS02490 0.90 -0.5 541,296 - LRK54_RS02490 0.90 -0.5 541,316 + -1.4 541,316 + +0.3 541,316 + -0.7 541,316 + +0.0 541,316 + -0.1 541,316 + -0.4 541,316 + -0.2 541,316 + -0.0 541,316 + -0.2 541,316 + -0.9 541,316 + -0.7 541,316 + -0.2 541,316 + +0.3 541,316 + -0.1 541,316 + +0.3 541,316 + -0.6 541,316 + -0.5 541,316 + +0.0 541,316 + +0.8 541,316 + -0.1 541,316 + +0.4 541,316 + +0.1 541,316 + +0.4 541,316 + +1.0 541,317 - -0.5 541,317 - -0.7 541,317 - -1.6 541,317 - +0.0 541,317 - -0.0 541,317 - -0.8 541,317 - +1.9 541,317 - -0.3 541,317 - -0.0 541,317 - -1.3 541,317 - -0.7 541,317 - +0.3 541,317 - -0.2 541,317 - -1.4 541,317 - -2.1 541,317 - +0.1 541,317 - +0.2 541,317 - -0.5 541,432 + -0.3 541,432 + -0.6 541,432 + +0.6 541,432 + +1.2 541,432 + +0.7 541,432 + -0.3 541,432 + +0.3 541,432 + +0.4 541,432 + +1.7 541,432 + +0.7 541,433 - -0.9 541,433 - +2.6 541,433 - -1.6 541,433 - +0.3 541,433 - +0.5 541,433 - +0.3 541,433 - +1.1 541,433 - +2.3 541,433 - -0.4 541,433 - +0.5 541,433 - -0.3 541,433 - -0.3 541,505 + +0.6 541,505 + -0.4 541,505 + -0.6 541,506 - +0.4 541,506 - -1.1 541,604 + -1.0 541,604 + -1.4 541,605 - +0.2 541,605 - -0.1 541,605 - -0.6 541,605 - -1.2 541,605 - -0.4 541,700 + LRK54_RS02495 0.25 -2.1 541,700 + LRK54_RS02495 0.25 -0.6 541,700 + LRK54_RS02495 0.25 -0.7 541,700 + LRK54_RS02495 0.25 -1.1 541,700 + LRK54_RS02495 0.25 -2.7 541,700 + LRK54_RS02495 0.25 -0.4 541,700 + LRK54_RS02495 0.25 -1.4 541,700 + LRK54_RS02495 0.25 -1.2 541,700 + LRK54_RS02495 0.25 -2.4 541,700 + LRK54_RS02495 0.25 -1.2 541,700 + LRK54_RS02495 0.25 -3.0 541,700 + LRK54_RS02495 0.25 -0.7 541,701 - LRK54_RS02495 0.25 -0.7 541,701 - LRK54_RS02495 0.25 -0.6 541,701 - LRK54_RS02495 0.25 -3.3 541,701 - LRK54_RS02495 0.25 -1.2 541,701 - LRK54_RS02495 0.25 -1.1 541,701 - LRK54_RS02495 0.25 +0.3 541,701 - LRK54_RS02495 0.25 -1.1 541,701 - -0.6 541,701 - LRK54_RS02495 0.25 -0.7 541,703 + LRK54_RS02495 0.25 -1.4 541,703 + LRK54_RS02495 0.25 +0.1 541,703 + LRK54_RS02495 0.25 -1.3 541,703 + LRK54_RS02495 0.25 -0.1 541,703 + LRK54_RS02495 0.25 +0.1 541,703 + LRK54_RS02495 0.25 +1.3 541,703 + LRK54_RS02495 0.25 -0.9 541,704 - LRK54_RS02495 0.26 -0.1 541,704 - LRK54_RS02495 0.26 -0.5 541,704 - LRK54_RS02495 0.26 -0.3 541,704 - LRK54_RS02495 0.26 +0.0 541,704 - LRK54_RS02495 0.26 -2.1 541,704 - LRK54_RS02495 0.26 -0.7 541,704 - LRK54_RS02495 0.26 -1.4 541,704 - LRK54_RS02495 0.26 -0.1 541,704 - LRK54_RS02495 0.26 +0.4
Or see this region's nucleotide sequence