Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS02410

Experiment: R2A with FW104 filtrate 0.5 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS02400 and LRK54_RS02405 are separated by 28 nucleotidesLRK54_RS02405 and LRK54_RS02410 overlap by 4 nucleotidesLRK54_RS02410 and LRK54_RS02415 are separated by 6 nucleotides LRK54_RS02400: LRK54_RS02400 - argininosuccinate synthase, at 521,836 to 523,029 _RS02400 LRK54_RS02405: LRK54_RS02405 - OsmC family protein, at 523,058 to 523,531 _RS02405 LRK54_RS02410: LRK54_RS02410 - FMN-binding negative transcriptional regulator, at 523,528 to 524,151 _RS02410 LRK54_RS02415: LRK54_RS02415 - N-acetylornithine carbamoyltransferase, at 524,158 to 525,165 _RS02415 Position (kb) 523 524 525Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 522.563 kb on + strand, within LRK54_RS02400at 522.621 kb on - strand, within LRK54_RS02400at 522.746 kb on + strand, within LRK54_RS02400at 522.747 kb on - strand, within LRK54_RS02400at 522.783 kb on - strand, within LRK54_RS02400at 522.939 kb on + strandat 522.939 kb on + strandat 522.939 kb on + strandat 522.939 kb on + strandat 522.940 kb on - strandat 522.940 kb on - strandat 522.940 kb on - strandat 522.968 kb on + strandat 522.968 kb on + strandat 522.969 kb on - strandat 522.969 kb on - strandat 522.969 kb on - strandat 523.267 kb on + strand, within LRK54_RS02405at 523.268 kb on - strand, within LRK54_RS02405at 523.268 kb on - strand, within LRK54_RS02405at 523.268 kb on - strand, within LRK54_RS02405at 523.268 kb on - strand, within LRK54_RS02405at 523.268 kb on - strand, within LRK54_RS02405at 523.268 kb on - strand, within LRK54_RS02405at 523.268 kb on - strand, within LRK54_RS02405at 523.268 kb on - strand, within LRK54_RS02405at 523.269 kb on + strand, within LRK54_RS02405at 523.269 kb on + strand, within LRK54_RS02405at 523.269 kb on + strand, within LRK54_RS02405at 523.269 kb on + strand, within LRK54_RS02405at 523.269 kb on + strand, within LRK54_RS02405at 523.269 kb on + strand, within LRK54_RS02405at 523.269 kb on + strand, within LRK54_RS02405at 523.269 kb on + strand, within LRK54_RS02405at 523.269 kb on + strand, within LRK54_RS02405at 523.270 kb on - strand, within LRK54_RS02405at 523.270 kb on - strand, within LRK54_RS02405at 523.270 kb on - strand, within LRK54_RS02405at 523.270 kb on - strand, within LRK54_RS02405at 523.270 kb on - strand, within LRK54_RS02405at 523.270 kb on - strand, within LRK54_RS02405at 523.270 kb on - strand, within LRK54_RS02405at 523.270 kb on - strand, within LRK54_RS02405at 523.311 kb on + strand, within LRK54_RS02405at 523.311 kb on + strand, within LRK54_RS02405at 523.312 kb on - strand, within LRK54_RS02405at 523.312 kb on - strand, within LRK54_RS02405at 523.312 kb on - strand, within LRK54_RS02405at 523.452 kb on + strand, within LRK54_RS02405at 523.452 kb on + strand, within LRK54_RS02405at 523.452 kb on + strand, within LRK54_RS02405at 523.452 kb on + strand, within LRK54_RS02405at 523.452 kb on + strand, within LRK54_RS02405at 523.452 kb on + strand, within LRK54_RS02405at 523.452 kb on + strand, within LRK54_RS02405at 523.452 kb on + strand, within LRK54_RS02405at 523.453 kb on - strand, within LRK54_RS02405at 523.453 kb on - strand, within LRK54_RS02405at 523.453 kb on - strand, within LRK54_RS02405at 523.453 kb on - strand, within LRK54_RS02405at 523.453 kb on - strand, within LRK54_RS02405at 523.453 kb on - strand, within LRK54_RS02405at 523.512 kb on + strandat 523.513 kb on - strandat 523.513 kb on - strandat 523.513 kb on - strandat 523.859 kb on + strand, within LRK54_RS02410at 523.859 kb on + strand, within LRK54_RS02410at 523.859 kb on + strand, within LRK54_RS02410at 523.859 kb on + strand, within LRK54_RS02410at 523.860 kb on - strand, within LRK54_RS02410at 523.860 kb on - strand, within LRK54_RS02410at 523.905 kb on - strand, within LRK54_RS02410at 523.922 kb on + strand, within LRK54_RS02410at 523.922 kb on + strand, within LRK54_RS02410at 523.922 kb on + strand, within LRK54_RS02410at 523.923 kb on - strand, within LRK54_RS02410at 523.923 kb on - strand, within LRK54_RS02410at 523.923 kb on - strand, within LRK54_RS02410at 523.923 kb on - strand, within LRK54_RS02410at 523.923 kb on - strand, within LRK54_RS02410at 523.923 kb on - strand, within LRK54_RS02410at 523.923 kb on - strand, within LRK54_RS02410at 524.147 kb on + strandat 524.147 kb on + strandat 524.147 kb on + strandat 524.147 kb on + strandat 524.147 kb on + strandat 524.147 kb on + strandat 524.147 kb on + strandat 524.147 kb on + strandat 524.147 kb on + strandat 524.147 kb on + strandat 524.147 kb on + strandat 524.147 kb on + strandat 524.147 kb on + strandat 524.147 kb on + strandat 524.147 kb on + strandat 524.147 kb on + strandat 524.148 kb on - strandat 524.148 kb on - strandat 524.148 kb on - strandat 524.148 kb on - strandat 524.148 kb on - strandat 524.148 kb on - strandat 524.148 kb on - strandat 524.148 kb on - strandat 524.148 kb on - strandat 524.423 kb on + strand, within LRK54_RS02415at 524.423 kb on + strand, within LRK54_RS02415at 524.444 kb on + strandat 524.444 kb on + strand, within LRK54_RS02415at 524.445 kb on - strand, within LRK54_RS02415at 524.445 kb on - strand, within LRK54_RS02415at 524.445 kb on - strand, within LRK54_RS02415at 524.445 kb on - strand, within LRK54_RS02415at 524.445 kb on - strand, within LRK54_RS02415at 524.445 kb on - strand, within LRK54_RS02415at 524.519 kb on + strand, within LRK54_RS02415at 524.519 kb on + strandat 524.519 kb on + strand, within LRK54_RS02415at 524.519 kb on + strand, within LRK54_RS02415at 524.519 kb on + strand, within LRK54_RS02415at 524.519 kb on + strand, within LRK54_RS02415at 524.519 kb on + strand, within LRK54_RS02415at 524.519 kb on + strand, within LRK54_RS02415at 524.519 kb on + strand, within LRK54_RS02415at 524.519 kb on + strand, within LRK54_RS02415at 524.519 kb on + strand, within LRK54_RS02415at 524.519 kb on + strand, within LRK54_RS02415at 524.519 kb on + strand, within LRK54_RS02415at 524.519 kb on + strand, within LRK54_RS02415at 524.519 kb on + strand, within LRK54_RS02415at 524.519 kb on + strand, within LRK54_RS02415at 524.519 kb on + strand, within LRK54_RS02415at 524.519 kb on + strand, within LRK54_RS02415at 524.519 kb on + strand, within LRK54_RS02415at 524.519 kb on + strand, within LRK54_RS02415at 524.519 kb on + strand, within LRK54_RS02415at 524.520 kb on - strand, within LRK54_RS02415at 524.520 kb on - strand, within LRK54_RS02415at 524.520 kb on - strand, within LRK54_RS02415at 524.520 kb on - strand, within LRK54_RS02415at 524.520 kb on - strand, within LRK54_RS02415at 524.520 kb on - strand, within LRK54_RS02415at 524.520 kb on - strand, within LRK54_RS02415at 524.520 kb on - strand, within LRK54_RS02415at 524.520 kb on - strand, within LRK54_RS02415at 524.520 kb on - strand, within LRK54_RS02415at 524.520 kb on - strand, within LRK54_RS02415at 524.520 kb on - strand, within LRK54_RS02415at 524.520 kb on - strand, within LRK54_RS02415at 524.520 kb on - strand, within LRK54_RS02415at 524.520 kb on - strand, within LRK54_RS02415at 524.520 kb on - strand, within LRK54_RS02415at 524.520 kb on - strand, within LRK54_RS02415at 524.537 kb on + strand, within LRK54_RS02415at 524.537 kb on + strand, within LRK54_RS02415at 524.537 kb on + strand, within LRK54_RS02415at 524.538 kb on - strand, within LRK54_RS02415at 524.538 kb on - strand, within LRK54_RS02415at 524.617 kb on - strand, within LRK54_RS02415at 524.636 kb on + strand, within LRK54_RS02415at 524.636 kb on + strand, within LRK54_RS02415at 524.636 kb on + strand, within LRK54_RS02415at 524.636 kb on + strand, within LRK54_RS02415at 524.636 kb on + strand, within LRK54_RS02415at 524.636 kb on + strand, within LRK54_RS02415at 524.636 kb on + strand, within LRK54_RS02415at 524.636 kb on + strand, within LRK54_RS02415at 524.636 kb on + strand, within LRK54_RS02415at 524.636 kb on + strand, within LRK54_RS02415at 524.636 kb on + strand, within LRK54_RS02415at 524.636 kb on + strand, within LRK54_RS02415at 524.636 kb on + strand, within LRK54_RS02415at 524.637 kb on - strand, within LRK54_RS02415at 524.637 kb on - strand, within LRK54_RS02415at 524.637 kb on - strand, within LRK54_RS02415at 524.637 kb on - strand, within LRK54_RS02415at 524.637 kb on - strand, within LRK54_RS02415at 524.637 kb on - strand, within LRK54_RS02415at 524.637 kb on - strand, within LRK54_RS02415at 524.637 kb on - strand, within LRK54_RS02415at 524.637 kb on - strand, within LRK54_RS02415at 524.637 kb on - strand, within LRK54_RS02415at 524.637 kb on - strand, within LRK54_RS02415at 524.637 kb on - strand, within LRK54_RS02415at 524.637 kb on - strand, within LRK54_RS02415at 524.637 kb on - strand, within LRK54_RS02415at 524.637 kb on - strand, within LRK54_RS02415at 524.637 kb on - strand, within LRK54_RS02415at 524.654 kb on + strand, within LRK54_RS02415at 524.654 kb on + strand, within LRK54_RS02415at 524.654 kb on + strand, within LRK54_RS02415at 524.654 kb on + strand, within LRK54_RS02415at 524.654 kb on + strand, within LRK54_RS02415at 524.654 kb on + strand, within LRK54_RS02415at 524.655 kb on - strand, within LRK54_RS02415at 524.655 kb on - strand, within LRK54_RS02415at 524.655 kb on - strand, within LRK54_RS02415at 524.762 kb on + strand, within LRK54_RS02415at 524.763 kb on - strand, within LRK54_RS02415at 524.763 kb on - strand, within LRK54_RS02415at 524.852 kb on + strand, within LRK54_RS02415at 524.852 kb on + strand, within LRK54_RS02415at 524.852 kb on + strand, within LRK54_RS02415at 524.852 kb on + strand, within LRK54_RS02415at 524.852 kb on + strand, within LRK54_RS02415at 524.853 kb on - strand, within LRK54_RS02415at 524.853 kb on - strand, within LRK54_RS02415at 524.853 kb on - strand, within LRK54_RS02415at 525.131 kb on + strandat 525.131 kb on + strandat 525.131 kb on + strandat 525.131 kb on + strandat 525.132 kb on - strandat 525.132 kb on - strandat 525.132 kb on - strandat 525.132 kb on - strandat 525.132 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X
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522,563 + LRK54_RS02400 0.61 -0.1
522,621 - LRK54_RS02400 0.66 -1.1
522,746 + LRK54_RS02400 0.76 +0.2
522,747 - LRK54_RS02400 0.76 +0.3
522,783 - LRK54_RS02400 0.79 -1.2
522,939 + +0.6
522,939 + -0.8
522,939 + -0.1
522,939 + +0.4
522,940 - +0.1
522,940 - +0.9
522,940 - -0.1
522,968 + -0.3
522,968 + +0.5
522,969 - -0.3
522,969 - -2.4
522,969 - -0.2
523,267 + LRK54_RS02405 0.44 -1.8
523,268 - LRK54_RS02405 0.44 +0.4
523,268 - LRK54_RS02405 0.44 +2.3
523,268 - LRK54_RS02405 0.44 -1.3
523,268 - LRK54_RS02405 0.44 -0.3
523,268 - LRK54_RS02405 0.44 -0.6
523,268 - LRK54_RS02405 0.44 +1.3
523,268 - LRK54_RS02405 0.44 +0.1
523,268 - LRK54_RS02405 0.44 -1.2
523,269 + LRK54_RS02405 0.45 +0.1
523,269 + LRK54_RS02405 0.45 -0.4
523,269 + LRK54_RS02405 0.45 -0.0
523,269 + LRK54_RS02405 0.45 -0.1
523,269 + LRK54_RS02405 0.45 -0.3
523,269 + LRK54_RS02405 0.45 +0.1
523,269 + LRK54_RS02405 0.45 -1.1
523,269 + LRK54_RS02405 0.45 +0.3
523,269 + LRK54_RS02405 0.45 -0.2
523,270 - LRK54_RS02405 0.45 -0.3
523,270 - LRK54_RS02405 0.45 +0.5
523,270 - LRK54_RS02405 0.45 +0.0
523,270 - LRK54_RS02405 0.45 -0.1
523,270 - LRK54_RS02405 0.45 -0.9
523,270 - LRK54_RS02405 0.45 -1.3
523,270 - LRK54_RS02405 0.45 -0.1
523,270 - LRK54_RS02405 0.45 +0.7
523,311 + LRK54_RS02405 0.53 +0.5
523,311 + LRK54_RS02405 0.53 +0.5
523,312 - LRK54_RS02405 0.54 -0.4
523,312 - LRK54_RS02405 0.54 -0.4
523,312 - LRK54_RS02405 0.54 +0.5
523,452 + LRK54_RS02405 0.83 -0.2
523,452 + LRK54_RS02405 0.83 -1.9
523,452 + LRK54_RS02405 0.83 +0.2
523,452 + LRK54_RS02405 0.83 -0.8
523,452 + LRK54_RS02405 0.83 -0.4
523,452 + LRK54_RS02405 0.83 -1.3
523,452 + LRK54_RS02405 0.83 +0.4
523,452 + LRK54_RS02405 0.83 -0.8
523,453 - LRK54_RS02405 0.83 +0.3
523,453 - LRK54_RS02405 0.83 -1.0
523,453 - LRK54_RS02405 0.83 -0.5
523,453 - LRK54_RS02405 0.83 -0.5
523,453 - LRK54_RS02405 0.83 -0.6
523,453 - LRK54_RS02405 0.83 -0.5
523,512 + -1.1
523,513 - -1.7
523,513 - -1.2
523,513 - -1.2
523,859 + LRK54_RS02410 0.53 +1.0
523,859 + LRK54_RS02410 0.53 +0.7
523,859 + LRK54_RS02410 0.53 +1.0
523,859 + LRK54_RS02410 0.53 +2.0
523,860 - LRK54_RS02410 0.53 +0.2
523,860 - LRK54_RS02410 0.53 -0.7
523,905 - LRK54_RS02410 0.60 +0.0
523,922 + LRK54_RS02410 0.63 +1.0
523,922 + LRK54_RS02410 0.63 -0.5
523,922 + LRK54_RS02410 0.63 +1.0
523,923 - LRK54_RS02410 0.63 -0.5
523,923 - LRK54_RS02410 0.63 +0.3
523,923 - LRK54_RS02410 0.63 +0.3
523,923 - LRK54_RS02410 0.63 +1.1
523,923 - LRK54_RS02410 0.63 +0.4
523,923 - LRK54_RS02410 0.63 -0.1
523,923 - LRK54_RS02410 0.63 -0.3
524,147 + -0.0
524,147 + +0.9
524,147 + +0.5
524,147 + +0.7
524,147 + -0.2
524,147 + +0.5
524,147 + -0.7
524,147 + -0.3
524,147 + +0.3
524,147 + +0.7
524,147 + +0.5
524,147 + +0.5
524,147 + +0.8
524,147 + +0.1
524,147 + +0.3
524,147 + -0.8
524,148 - +0.1
524,148 - -0.0
524,148 - +0.3
524,148 - +0.7
524,148 - +1.4
524,148 - +0.1
524,148 - -1.9
524,148 - -2.1
524,148 - -0.7
524,423 + LRK54_RS02415 0.26 -1.2
524,423 + LRK54_RS02415 0.26 +1.3
524,444 + -0.7
524,444 + LRK54_RS02415 0.28 -1.7
524,445 - LRK54_RS02415 0.28 -0.4
524,445 - LRK54_RS02415 0.28 +0.7
524,445 - LRK54_RS02415 0.28 -0.6
524,445 - LRK54_RS02415 0.28 +3.3
524,445 - LRK54_RS02415 0.28 -0.1
524,445 - LRK54_RS02415 0.28 +0.7
524,519 + LRK54_RS02415 0.36 -0.8
524,519 + -0.3
524,519 + LRK54_RS02415 0.36 -0.2
524,519 + LRK54_RS02415 0.36 -0.3
524,519 + LRK54_RS02415 0.36 +1.7
524,519 + LRK54_RS02415 0.36 -0.1
524,519 + LRK54_RS02415 0.36 +0.0
524,519 + LRK54_RS02415 0.36 +0.3
524,519 + LRK54_RS02415 0.36 +0.1
524,519 + LRK54_RS02415 0.36 -1.3
524,519 + LRK54_RS02415 0.36 -1.2
524,519 + LRK54_RS02415 0.36 -0.7
524,519 + LRK54_RS02415 0.36 +1.5
524,519 + LRK54_RS02415 0.36 +0.3
524,519 + LRK54_RS02415 0.36 +1.3
524,519 + LRK54_RS02415 0.36 -1.1
524,519 + LRK54_RS02415 0.36 -0.2
524,519 + LRK54_RS02415 0.36 +0.7
524,519 + LRK54_RS02415 0.36 -0.6
524,519 + LRK54_RS02415 0.36 -0.3
524,519 + LRK54_RS02415 0.36 -0.1
524,520 - LRK54_RS02415 0.36 +0.2
524,520 - LRK54_RS02415 0.36 +0.5
524,520 - LRK54_RS02415 0.36 -1.1
524,520 - LRK54_RS02415 0.36 -0.1
524,520 - LRK54_RS02415 0.36 +1.3
524,520 - LRK54_RS02415 0.36 -0.5
524,520 - LRK54_RS02415 0.36 -1.0
524,520 - LRK54_RS02415 0.36 -1.1
524,520 - LRK54_RS02415 0.36 +0.3
524,520 - LRK54_RS02415 0.36 -1.3
524,520 - LRK54_RS02415 0.36 -2.2
524,520 - LRK54_RS02415 0.36 -2.1
524,520 - LRK54_RS02415 0.36 -0.1
524,520 - LRK54_RS02415 0.36 -1.3
524,520 - LRK54_RS02415 0.36 -0.5
524,520 - LRK54_RS02415 0.36 -1.1
524,520 - LRK54_RS02415 0.36 -1.4
524,537 + LRK54_RS02415 0.38 -1.1
524,537 + LRK54_RS02415 0.38 -2.2
524,537 + LRK54_RS02415 0.38 -0.5
524,538 - LRK54_RS02415 0.38 +1.3
524,538 - LRK54_RS02415 0.38 -1.3
524,617 - LRK54_RS02415 0.46 -1.5
524,636 + LRK54_RS02415 0.47 -0.1
524,636 + LRK54_RS02415 0.47 -0.8
524,636 + LRK54_RS02415 0.47 -0.1
524,636 + LRK54_RS02415 0.47 +0.7
524,636 + LRK54_RS02415 0.47 -0.4
524,636 + LRK54_RS02415 0.47 -0.6
524,636 + LRK54_RS02415 0.47 -0.3
524,636 + LRK54_RS02415 0.47 -0.7
524,636 + LRK54_RS02415 0.47 -1.3
524,636 + LRK54_RS02415 0.47 -0.1
524,636 + LRK54_RS02415 0.47 -0.1
524,636 + LRK54_RS02415 0.47 +0.5
524,636 + LRK54_RS02415 0.47 -0.7
524,637 - LRK54_RS02415 0.48 +0.6
524,637 - LRK54_RS02415 0.48 -0.5
524,637 - LRK54_RS02415 0.48 -0.4
524,637 - LRK54_RS02415 0.48 -1.1
524,637 - LRK54_RS02415 0.48 -1.7
524,637 - LRK54_RS02415 0.48 +0.1
524,637 - LRK54_RS02415 0.48 -0.8
524,637 - LRK54_RS02415 0.48 -0.5
524,637 - LRK54_RS02415 0.48 +0.5
524,637 - LRK54_RS02415 0.48 -0.5
524,637 - LRK54_RS02415 0.48 -2.0
524,637 - LRK54_RS02415 0.48 -0.5
524,637 - LRK54_RS02415 0.48 -1.0
524,637 - LRK54_RS02415 0.48 -3.1
524,637 - LRK54_RS02415 0.48 -2.4
524,637 - LRK54_RS02415 0.48 +0.7
524,654 + LRK54_RS02415 0.49 -0.5
524,654 + LRK54_RS02415 0.49 -0.5
524,654 + LRK54_RS02415 0.49 -1.4
524,654 + LRK54_RS02415 0.49 -0.2
524,654 + LRK54_RS02415 0.49 +1.3
524,654 + LRK54_RS02415 0.49 -0.6
524,655 - LRK54_RS02415 0.49 -2.3
524,655 - LRK54_RS02415 0.49 -0.1
524,655 - LRK54_RS02415 0.49 -1.1
524,762 + LRK54_RS02415 0.60 -0.9
524,763 - LRK54_RS02415 0.60 -1.2
524,763 - LRK54_RS02415 0.60 +0.3
524,852 + LRK54_RS02415 0.69 -1.1
524,852 + LRK54_RS02415 0.69 -0.5
524,852 + LRK54_RS02415 0.69 -0.7
524,852 + LRK54_RS02415 0.69 -0.1
524,852 + LRK54_RS02415 0.69 -0.4
524,853 - LRK54_RS02415 0.69 -3.4
524,853 - LRK54_RS02415 0.69 +0.5
524,853 - LRK54_RS02415 0.69 +2.1
525,131 + -0.6
525,131 + -0.5
525,131 + -0.0
525,131 + +0.4
525,132 - -2.2
525,132 - -0.3
525,132 - -0.5
525,132 - -1.7
525,132 - -1.5

Or see this region's nucleotide sequence