Experiment: R2A with FW104 filtrate 0.5 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS02380 and LRK54_RS02385 are separated by 19 nucleotides LRK54_RS02385 and LRK54_RS02390 are separated by 3 nucleotides LRK54_RS02390 and LRK54_RS02395 are separated by 17 nucleotides
LRK54_RS02380: LRK54_RS02380 - argininosuccinate lyase, at 517,097 to 518,392
_RS02380
LRK54_RS02385: LRK54_RS02385 - N-acetyl-gamma-glutamyl-phosphate reductase, at 518,412 to 519,365
_RS02385
LRK54_RS02390: LRK54_RS02390 - acetylglutamate kinase, at 519,369 to 520,688
_RS02390
LRK54_RS02395: LRK54_RS02395 - acetylornithine deacetylase, at 520,706 to 521,839
_RS02395
Position (kb) 519
520
521 Strain fitness (log2 ratio) -2
-1
0
1
2 at 518.413 kb on + strand at 518.414 kb on - strand at 518.414 kb on - strand at 518.431 kb on + strand at 518.431 kb on + strand at 518.431 kb on + strand at 518.431 kb on + strand at 518.432 kb on - strand at 518.432 kb on - strand at 518.432 kb on - strand at 518.432 kb on - strand at 518.635 kb on + strand, within LRK54_RS02385 at 518.689 kb on + strand, within LRK54_RS02385 at 518.689 kb on + strand, within LRK54_RS02385 at 518.689 kb on + strand, within LRK54_RS02385 at 518.689 kb on + strand, within LRK54_RS02385 at 518.689 kb on + strand, within LRK54_RS02385 at 518.689 kb on + strand, within LRK54_RS02385 at 518.689 kb on + strand, within LRK54_RS02385 at 518.689 kb on + strand, within LRK54_RS02385 at 518.689 kb on + strand, within LRK54_RS02385 at 518.689 kb on + strand, within LRK54_RS02385 at 518.690 kb on - strand, within LRK54_RS02385 at 518.690 kb on - strand, within LRK54_RS02385 at 518.690 kb on - strand, within LRK54_RS02385 at 518.690 kb on - strand, within LRK54_RS02385 at 518.690 kb on - strand, within LRK54_RS02385 at 518.690 kb on - strand, within LRK54_RS02385 at 518.806 kb on + strand, within LRK54_RS02385 at 518.806 kb on + strand, within LRK54_RS02385 at 518.956 kb on + strand, within LRK54_RS02385 at 518.956 kb on + strand, within LRK54_RS02385 at 518.957 kb on - strand, within LRK54_RS02385 at 518.957 kb on - strand, within LRK54_RS02385 at 519.022 kb on + strand, within LRK54_RS02385 at 519.022 kb on + strand, within LRK54_RS02385 at 519.022 kb on + strand, within LRK54_RS02385 at 519.022 kb on + strand, within LRK54_RS02385 at 519.022 kb on + strand, within LRK54_RS02385 at 519.022 kb on + strand, within LRK54_RS02385 at 519.023 kb on - strand, within LRK54_RS02385 at 519.023 kb on - strand, within LRK54_RS02385 at 519.025 kb on + strand, within LRK54_RS02385 at 519.025 kb on + strand, within LRK54_RS02385 at 519.025 kb on + strand, within LRK54_RS02385 at 519.025 kb on + strand, within LRK54_RS02385 at 519.025 kb on + strand, within LRK54_RS02385 at 519.026 kb on - strand, within LRK54_RS02385 at 519.026 kb on - strand, within LRK54_RS02385 at 519.026 kb on - strand, within LRK54_RS02385 at 519.026 kb on - strand, within LRK54_RS02385 at 519.026 kb on - strand, within LRK54_RS02385 at 519.026 kb on - strand, within LRK54_RS02385 at 519.026 kb on - strand, within LRK54_RS02385 at 519.026 kb on - strand, within LRK54_RS02385 at 519.046 kb on + strand, within LRK54_RS02385 at 519.047 kb on - strand, within LRK54_RS02385 at 519.190 kb on + strand, within LRK54_RS02385 at 519.190 kb on + strand, within LRK54_RS02385 at 519.190 kb on + strand, within LRK54_RS02385 at 519.190 kb on + strand, within LRK54_RS02385 at 519.191 kb on - strand, within LRK54_RS02385 at 519.191 kb on - strand, within LRK54_RS02385 at 519.342 kb on + strand at 519.342 kb on + strand at 519.343 kb on - strand at 519.496 kb on + strand at 519.496 kb on + strand at 519.496 kb on + strand at 519.497 kb on - strand at 519.497 kb on - strand at 519.497 kb on - strand at 519.499 kb on + strand at 519.499 kb on + strand at 519.499 kb on + strand at 519.500 kb on - strand at 519.500 kb on - strand at 519.500 kb on - strand at 519.500 kb on - strand at 519.632 kb on - strand, within LRK54_RS02390 at 519.673 kb on + strand, within LRK54_RS02390 at 519.673 kb on + strand, within LRK54_RS02390 at 519.673 kb on + strand, within LRK54_RS02390 at 519.673 kb on + strand, within LRK54_RS02390 at 519.673 kb on + strand, within LRK54_RS02390 at 519.673 kb on + strand, within LRK54_RS02390 at 519.674 kb on - strand, within LRK54_RS02390 at 519.674 kb on - strand, within LRK54_RS02390 at 519.674 kb on - strand, within LRK54_RS02390 at 519.674 kb on - strand, within LRK54_RS02390 at 519.688 kb on + strand, within LRK54_RS02390 at 519.688 kb on + strand, within LRK54_RS02390 at 519.688 kb on + strand, within LRK54_RS02390 at 519.688 kb on + strand, within LRK54_RS02390 at 519.688 kb on + strand, within LRK54_RS02390 at 519.688 kb on + strand, within LRK54_RS02390 at 519.689 kb on - strand, within LRK54_RS02390 at 519.689 kb on - strand, within LRK54_RS02390 at 519.689 kb on - strand, within LRK54_RS02390 at 519.689 kb on - strand, within LRK54_RS02390 at 519.689 kb on - strand, within LRK54_RS02390 at 519.689 kb on - strand, within LRK54_RS02390 at 519.689 kb on - strand, within LRK54_RS02390 at 519.718 kb on + strand, within LRK54_RS02390 at 519.719 kb on - strand, within LRK54_RS02390 at 519.719 kb on - strand, within LRK54_RS02390 at 519.998 kb on + strand, within LRK54_RS02390 at 520.075 kb on + strand, within LRK54_RS02390 at 520.075 kb on + strand, within LRK54_RS02390 at 520.075 kb on + strand, within LRK54_RS02390 at 520.075 kb on + strand, within LRK54_RS02390 at 520.075 kb on + strand, within LRK54_RS02390 at 520.075 kb on + strand, within LRK54_RS02390 at 520.075 kb on + strand, within LRK54_RS02390 at 520.076 kb on - strand, within LRK54_RS02390 at 520.076 kb on - strand, within LRK54_RS02390 at 520.076 kb on - strand, within LRK54_RS02390 at 520.076 kb on - strand, within LRK54_RS02390 at 520.076 kb on - strand, within LRK54_RS02390 at 520.076 kb on - strand, within LRK54_RS02390 at 520.076 kb on - strand, within LRK54_RS02390 at 520.076 kb on - strand, within LRK54_RS02390 at 520.261 kb on + strand, within LRK54_RS02390 at 520.261 kb on + strand, within LRK54_RS02390 at 520.262 kb on - strand, within LRK54_RS02390 at 520.262 kb on - strand, within LRK54_RS02390 at 520.262 kb on - strand, within LRK54_RS02390 at 520.262 kb on - strand, within LRK54_RS02390 at 520.262 kb on - strand, within LRK54_RS02390 at 520.368 kb on - strand, within LRK54_RS02390 at 520.606 kb on + strand at 520.606 kb on + strand at 520.606 kb on + strand at 520.606 kb on + strand at 520.606 kb on + strand at 520.606 kb on + strand at 520.606 kb on + strand at 520.607 kb on - strand at 520.607 kb on - strand at 520.676 kb on + strand at 520.677 kb on - strand at 520.782 kb on + strand at 520.782 kb on + strand at 520.782 kb on + strand at 520.782 kb on + strand at 520.782 kb on + strand at 520.783 kb on - strand at 520.783 kb on - strand at 520.783 kb on - strand at 520.783 kb on - strand at 520.851 kb on + strand, within LRK54_RS02395 at 520.851 kb on + strand, within LRK54_RS02395 at 520.852 kb on - strand, within LRK54_RS02395 at 520.852 kb on - strand, within LRK54_RS02395 at 520.866 kb on + strand, within LRK54_RS02395 at 521.400 kb on + strand, within LRK54_RS02395 at 521.400 kb on + strand, within LRK54_RS02395 at 521.400 kb on + strand, within LRK54_RS02395 at 521.401 kb on - strand, within LRK54_RS02395 at 521.401 kb on - strand, within LRK54_RS02395 at 521.401 kb on - strand, within LRK54_RS02395
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X remove 518,413 + +0.2 518,414 - +0.1 518,414 - -0.6 518,431 + +0.2 518,431 + -1.2 518,431 + -1.0 518,431 + -1.1 518,432 - +0.0 518,432 - +0.5 518,432 - -0.0 518,432 - -1.3 518,635 + LRK54_RS02385 0.23 -1.5 518,689 + LRK54_RS02385 0.29 -0.3 518,689 + LRK54_RS02385 0.29 +0.4 518,689 + LRK54_RS02385 0.29 -0.7 518,689 + LRK54_RS02385 0.29 +1.3 518,689 + LRK54_RS02385 0.29 -0.6 518,689 + LRK54_RS02385 0.29 +0.0 518,689 + LRK54_RS02385 0.29 -1.3 518,689 + LRK54_RS02385 0.29 +0.8 518,689 + LRK54_RS02385 0.29 -0.1 518,689 + LRK54_RS02385 0.29 -0.1 518,690 - LRK54_RS02385 0.29 -0.2 518,690 - LRK54_RS02385 0.29 -1.4 518,690 - LRK54_RS02385 0.29 +1.3 518,690 - LRK54_RS02385 0.29 -0.9 518,690 - LRK54_RS02385 0.29 -0.7 518,690 - LRK54_RS02385 0.29 +0.6 518,806 + LRK54_RS02385 0.41 +0.3 518,806 + LRK54_RS02385 0.41 -2.2 518,956 + LRK54_RS02385 0.57 -0.2 518,956 + LRK54_RS02385 0.57 +0.3 518,957 - LRK54_RS02385 0.57 +0.3 518,957 - LRK54_RS02385 0.57 -0.6 519,022 + LRK54_RS02385 0.64 +0.4 519,022 + LRK54_RS02385 0.64 +0.4 519,022 + LRK54_RS02385 0.64 -1.3 519,022 + LRK54_RS02385 0.64 -0.1 519,022 + LRK54_RS02385 0.64 -1.1 519,022 + LRK54_RS02385 0.64 -0.6 519,023 - LRK54_RS02385 0.64 -0.5 519,023 - LRK54_RS02385 0.64 +1.0 519,025 + LRK54_RS02385 0.64 +0.5 519,025 + LRK54_RS02385 0.64 +0.5 519,025 + LRK54_RS02385 0.64 +0.6 519,025 + LRK54_RS02385 0.64 -0.2 519,025 + LRK54_RS02385 0.64 -0.5 519,026 - LRK54_RS02385 0.64 -1.2 519,026 - LRK54_RS02385 0.64 -0.5 519,026 - LRK54_RS02385 0.64 +1.4 519,026 - LRK54_RS02385 0.64 +0.6 519,026 - LRK54_RS02385 0.64 -1.3 519,026 - LRK54_RS02385 0.64 -0.3 519,026 - LRK54_RS02385 0.64 -0.1 519,026 - LRK54_RS02385 0.64 -0.8 519,046 + LRK54_RS02385 0.66 +0.5 519,047 - LRK54_RS02385 0.67 -0.9 519,190 + LRK54_RS02385 0.82 +0.3 519,190 + LRK54_RS02385 0.82 +0.3 519,190 + LRK54_RS02385 0.82 -0.5 519,190 + LRK54_RS02385 0.82 +0.5 519,191 - LRK54_RS02385 0.82 -0.4 519,191 - LRK54_RS02385 0.82 +0.3 519,342 + +0.4 519,342 + +0.5 519,343 - -0.6 519,496 + +1.3 519,496 + -1.1 519,496 + +1.3 519,497 - -0.4 519,497 - +0.3 519,497 - +2.3 519,499 + +0.7 519,499 + +2.7 519,499 + -1.4 519,500 - -0.5 519,500 - +0.2 519,500 - +1.4 519,500 - +0.4 519,632 - LRK54_RS02390 0.20 -0.4 519,673 + LRK54_RS02390 0.23 +0.3 519,673 + LRK54_RS02390 0.23 +1.5 519,673 + LRK54_RS02390 0.23 -0.3 519,673 + LRK54_RS02390 0.23 -0.8 519,673 + LRK54_RS02390 0.23 +0.7 519,673 + LRK54_RS02390 0.23 +0.3 519,674 - LRK54_RS02390 0.23 -0.7 519,674 - LRK54_RS02390 0.23 +0.1 519,674 - LRK54_RS02390 0.23 -0.0 519,674 - LRK54_RS02390 0.23 +1.3 519,688 + LRK54_RS02390 0.24 +0.1 519,688 + LRK54_RS02390 0.24 -0.1 519,688 + LRK54_RS02390 0.24 +0.8 519,688 + LRK54_RS02390 0.24 +0.4 519,688 + LRK54_RS02390 0.24 -0.3 519,688 + LRK54_RS02390 0.24 +0.1 519,689 - LRK54_RS02390 0.24 -1.7 519,689 - LRK54_RS02390 0.24 +2.3 519,689 - LRK54_RS02390 0.24 +1.0 519,689 - LRK54_RS02390 0.24 +0.7 519,689 - LRK54_RS02390 0.24 +0.7 519,689 - LRK54_RS02390 0.24 +1.1 519,689 - LRK54_RS02390 0.24 -0.7 519,718 + LRK54_RS02390 0.26 -0.1 519,719 - LRK54_RS02390 0.27 -0.1 519,719 - LRK54_RS02390 0.27 +0.7 519,998 + LRK54_RS02390 0.48 +0.8 520,075 + LRK54_RS02390 0.53 -1.3 520,075 + LRK54_RS02390 0.53 +0.5 520,075 + LRK54_RS02390 0.53 -0.5 520,075 + LRK54_RS02390 0.53 -0.7 520,075 + LRK54_RS02390 0.53 -2.2 520,075 + LRK54_RS02390 0.53 +1.3 520,075 + LRK54_RS02390 0.53 -0.1 520,076 - LRK54_RS02390 0.54 +0.1 520,076 - LRK54_RS02390 0.54 -0.4 520,076 - LRK54_RS02390 0.54 +0.9 520,076 - LRK54_RS02390 0.54 +1.5 520,076 - LRK54_RS02390 0.54 +2.0 520,076 - LRK54_RS02390 0.54 +1.3 520,076 - LRK54_RS02390 0.54 +0.7 520,076 - LRK54_RS02390 0.54 -0.7 520,261 + LRK54_RS02390 0.68 +0.8 520,261 + LRK54_RS02390 0.68 +0.5 520,262 - LRK54_RS02390 0.68 +0.3 520,262 - LRK54_RS02390 0.68 -0.2 520,262 - LRK54_RS02390 0.68 -0.2 520,262 - LRK54_RS02390 0.68 +0.0 520,262 - LRK54_RS02390 0.68 -0.0 520,368 - LRK54_RS02390 0.76 +0.5 520,606 + -0.7 520,606 + -0.9 520,606 + +0.1 520,606 + -0.5 520,606 + -0.8 520,606 + +0.7 520,606 + +0.7 520,607 - +1.1 520,607 - -0.5 520,676 + +0.0 520,677 - +0.3 520,782 + +0.2 520,782 + -0.3 520,782 + -1.3 520,782 + -1.3 520,782 + -0.1 520,783 - +1.7 520,783 - +1.7 520,783 - -1.1 520,783 - -2.0 520,851 + LRK54_RS02395 0.13 +1.4 520,851 + LRK54_RS02395 0.13 -0.7 520,852 - LRK54_RS02395 0.13 -0.9 520,852 - LRK54_RS02395 0.13 -1.4 520,866 + LRK54_RS02395 0.14 +0.5 521,400 + LRK54_RS02395 0.61 -0.4 521,400 + LRK54_RS02395 0.61 -1.8 521,400 + LRK54_RS02395 0.61 -0.1 521,401 - LRK54_RS02395 0.61 +0.7 521,401 - LRK54_RS02395 0.61 +1.3 521,401 - LRK54_RS02395 0.61 -0.6
Or see this region's nucleotide sequence