Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS02380

Experiment: R2A with FW104 filtrate 0.5 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS02375 and LRK54_RS02380 are separated by 13 nucleotidesLRK54_RS02380 and LRK54_RS02385 are separated by 19 nucleotidesLRK54_RS02385 and LRK54_RS02390 are separated by 3 nucleotides LRK54_RS02375: LRK54_RS02375 - glutamate 5-kinase, at 515,896 to 517,083 _RS02375 LRK54_RS02380: LRK54_RS02380 - argininosuccinate lyase, at 517,097 to 518,392 _RS02380 LRK54_RS02385: LRK54_RS02385 - N-acetyl-gamma-glutamyl-phosphate reductase, at 518,412 to 519,365 _RS02385 LRK54_RS02390: LRK54_RS02390 - acetylglutamate kinase, at 519,369 to 520,688 _RS02390 Position (kb) 517 518 519Strain fitness (log2 ratio) -2 -1 0 1at 516.239 kb on + strand, within LRK54_RS02375at 516.239 kb on + strand, within LRK54_RS02375at 516.239 kb on + strand, within LRK54_RS02375at 516.239 kb on + strand, within LRK54_RS02375at 516.240 kb on - strand, within LRK54_RS02375at 516.240 kb on - strand, within LRK54_RS02375at 516.240 kb on - strand, within LRK54_RS02375at 516.240 kb on - strand, within LRK54_RS02375at 516.240 kb on - strand, within LRK54_RS02375at 516.282 kb on + strand, within LRK54_RS02375at 516.515 kb on + strand, within LRK54_RS02375at 516.515 kb on + strand, within LRK54_RS02375at 516.515 kb on + strand, within LRK54_RS02375at 516.516 kb on - strand, within LRK54_RS02375at 516.516 kb on - strand, within LRK54_RS02375at 517.240 kb on - strand, within LRK54_RS02380at 517.296 kb on + strand, within LRK54_RS02380at 517.296 kb on + strand, within LRK54_RS02380at 517.296 kb on + strand, within LRK54_RS02380at 517.296 kb on + strand, within LRK54_RS02380at 517.297 kb on - strand, within LRK54_RS02380at 517.297 kb on - strand, within LRK54_RS02380at 517.297 kb on - strand, within LRK54_RS02380at 517.297 kb on - strand, within LRK54_RS02380at 517.297 kb on - strand, within LRK54_RS02380at 517.297 kb on - strand, within LRK54_RS02380at 517.297 kb on - strand, within LRK54_RS02380at 517.440 kb on + strand, within LRK54_RS02380at 517.500 kb on + strand, within LRK54_RS02380at 517.500 kb on + strand, within LRK54_RS02380at 517.500 kb on + strand, within LRK54_RS02380at 517.500 kb on + strand, within LRK54_RS02380at 517.501 kb on - strand, within LRK54_RS02380at 517.501 kb on - strand, within LRK54_RS02380at 517.501 kb on - strand, within LRK54_RS02380at 517.501 kb on - strand, within LRK54_RS02380at 517.501 kb on - strand, within LRK54_RS02380at 517.569 kb on + strand, within LRK54_RS02380at 517.569 kb on + strand, within LRK54_RS02380at 517.570 kb on - strand, within LRK54_RS02380at 517.570 kb on - strand, within LRK54_RS02380at 517.570 kb on - strand, within LRK54_RS02380at 517.570 kb on - strand, within LRK54_RS02380at 517.587 kb on - strand, within LRK54_RS02380at 517.710 kb on + strand, within LRK54_RS02380at 517.710 kb on + strand, within LRK54_RS02380at 517.710 kb on + strand, within LRK54_RS02380at 517.710 kb on + strand, within LRK54_RS02380at 517.710 kb on + strand, within LRK54_RS02380at 517.711 kb on - strand, within LRK54_RS02380at 517.711 kb on - strand, within LRK54_RS02380at 517.929 kb on + strand, within LRK54_RS02380at 518.413 kb on + strandat 518.414 kb on - strandat 518.414 kb on - strandat 518.431 kb on + strandat 518.431 kb on + strandat 518.431 kb on + strandat 518.431 kb on + strandat 518.432 kb on - strandat 518.432 kb on - strandat 518.432 kb on - strandat 518.432 kb on - strandat 518.635 kb on + strand, within LRK54_RS02385at 518.689 kb on + strand, within LRK54_RS02385at 518.689 kb on + strand, within LRK54_RS02385at 518.689 kb on + strand, within LRK54_RS02385at 518.689 kb on + strand, within LRK54_RS02385at 518.689 kb on + strand, within LRK54_RS02385at 518.689 kb on + strand, within LRK54_RS02385at 518.689 kb on + strand, within LRK54_RS02385at 518.689 kb on + strand, within LRK54_RS02385at 518.689 kb on + strand, within LRK54_RS02385at 518.689 kb on + strand, within LRK54_RS02385at 518.690 kb on - strand, within LRK54_RS02385at 518.690 kb on - strand, within LRK54_RS02385at 518.690 kb on - strand, within LRK54_RS02385at 518.690 kb on - strand, within LRK54_RS02385at 518.690 kb on - strand, within LRK54_RS02385at 518.690 kb on - strand, within LRK54_RS02385at 518.806 kb on + strand, within LRK54_RS02385at 518.806 kb on + strand, within LRK54_RS02385at 518.956 kb on + strand, within LRK54_RS02385at 518.956 kb on + strand, within LRK54_RS02385at 518.957 kb on - strand, within LRK54_RS02385at 518.957 kb on - strand, within LRK54_RS02385at 519.022 kb on + strand, within LRK54_RS02385at 519.022 kb on + strand, within LRK54_RS02385at 519.022 kb on + strand, within LRK54_RS02385at 519.022 kb on + strand, within LRK54_RS02385at 519.022 kb on + strand, within LRK54_RS02385at 519.022 kb on + strand, within LRK54_RS02385at 519.023 kb on - strand, within LRK54_RS02385at 519.023 kb on - strand, within LRK54_RS02385at 519.025 kb on + strand, within LRK54_RS02385at 519.025 kb on + strand, within LRK54_RS02385at 519.025 kb on + strand, within LRK54_RS02385at 519.025 kb on + strand, within LRK54_RS02385at 519.025 kb on + strand, within LRK54_RS02385at 519.026 kb on - strand, within LRK54_RS02385at 519.026 kb on - strand, within LRK54_RS02385at 519.026 kb on - strand, within LRK54_RS02385at 519.026 kb on - strand, within LRK54_RS02385at 519.026 kb on - strand, within LRK54_RS02385at 519.026 kb on - strand, within LRK54_RS02385at 519.026 kb on - strand, within LRK54_RS02385at 519.026 kb on - strand, within LRK54_RS02385at 519.046 kb on + strand, within LRK54_RS02385at 519.047 kb on - strand, within LRK54_RS02385at 519.190 kb on + strand, within LRK54_RS02385at 519.190 kb on + strand, within LRK54_RS02385at 519.190 kb on + strand, within LRK54_RS02385at 519.190 kb on + strand, within LRK54_RS02385at 519.191 kb on - strand, within LRK54_RS02385at 519.191 kb on - strand, within LRK54_RS02385at 519.342 kb on + strandat 519.342 kb on + strandat 519.343 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X
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516,239 + LRK54_RS02375 0.29 -0.3
516,239 + LRK54_RS02375 0.29 +0.3
516,239 + LRK54_RS02375 0.29 +0.7
516,239 + LRK54_RS02375 0.29 +0.7
516,240 - LRK54_RS02375 0.29 -0.1
516,240 - LRK54_RS02375 0.29 -2.6
516,240 - LRK54_RS02375 0.29 -0.1
516,240 - LRK54_RS02375 0.29 +0.0
516,240 - LRK54_RS02375 0.29 -1.9
516,282 + LRK54_RS02375 0.32 -0.4
516,515 + LRK54_RS02375 0.52 -1.1
516,515 + LRK54_RS02375 0.52 +0.1
516,515 + LRK54_RS02375 0.52 +0.1
516,516 - LRK54_RS02375 0.52 -0.4
516,516 - LRK54_RS02375 0.52 -0.2
517,240 - LRK54_RS02380 0.11 -0.5
517,296 + LRK54_RS02380 0.15 -1.3
517,296 + LRK54_RS02380 0.15 +1.3
517,296 + LRK54_RS02380 0.15 +0.3
517,296 + LRK54_RS02380 0.15 +0.3
517,297 - LRK54_RS02380 0.15 -1.2
517,297 - LRK54_RS02380 0.15 +0.3
517,297 - LRK54_RS02380 0.15 -0.3
517,297 - LRK54_RS02380 0.15 -0.5
517,297 - LRK54_RS02380 0.15 -0.7
517,297 - LRK54_RS02380 0.15 -0.3
517,297 - LRK54_RS02380 0.15 -0.3
517,440 + LRK54_RS02380 0.26 -1.1
517,500 + LRK54_RS02380 0.31 +0.3
517,500 + LRK54_RS02380 0.31 -1.1
517,500 + LRK54_RS02380 0.31 +0.3
517,500 + LRK54_RS02380 0.31 -1.9
517,501 - LRK54_RS02380 0.31 -0.8
517,501 - LRK54_RS02380 0.31 -1.2
517,501 - LRK54_RS02380 0.31 -0.1
517,501 - LRK54_RS02380 0.31 -0.5
517,501 - LRK54_RS02380 0.31 +1.6
517,569 + LRK54_RS02380 0.36 -0.5
517,569 + LRK54_RS02380 0.36 -2.6
517,570 - LRK54_RS02380 0.36 +0.7
517,570 - LRK54_RS02380 0.36 -0.1
517,570 - LRK54_RS02380 0.36 -0.3
517,570 - LRK54_RS02380 0.36 -0.7
517,587 - LRK54_RS02380 0.38 -1.2
517,710 + LRK54_RS02380 0.47 -0.0
517,710 + LRK54_RS02380 0.47 -1.9
517,710 + LRK54_RS02380 0.47 +0.5
517,710 + LRK54_RS02380 0.47 -0.5
517,710 + LRK54_RS02380 0.47 -0.7
517,711 - LRK54_RS02380 0.47 -2.3
517,711 - LRK54_RS02380 0.47 -0.7
517,929 + LRK54_RS02380 0.64 -0.5
518,413 + +0.2
518,414 - +0.1
518,414 - -0.6
518,431 + +0.2
518,431 + -1.2
518,431 + -1.0
518,431 + -1.1
518,432 - +0.0
518,432 - +0.5
518,432 - -0.0
518,432 - -1.3
518,635 + LRK54_RS02385 0.23 -1.5
518,689 + LRK54_RS02385 0.29 -0.3
518,689 + LRK54_RS02385 0.29 +0.4
518,689 + LRK54_RS02385 0.29 -0.7
518,689 + LRK54_RS02385 0.29 +1.3
518,689 + LRK54_RS02385 0.29 -0.6
518,689 + LRK54_RS02385 0.29 +0.0
518,689 + LRK54_RS02385 0.29 -1.3
518,689 + LRK54_RS02385 0.29 +0.8
518,689 + LRK54_RS02385 0.29 -0.1
518,689 + LRK54_RS02385 0.29 -0.1
518,690 - LRK54_RS02385 0.29 -0.2
518,690 - LRK54_RS02385 0.29 -1.4
518,690 - LRK54_RS02385 0.29 +1.3
518,690 - LRK54_RS02385 0.29 -0.9
518,690 - LRK54_RS02385 0.29 -0.7
518,690 - LRK54_RS02385 0.29 +0.6
518,806 + LRK54_RS02385 0.41 +0.3
518,806 + LRK54_RS02385 0.41 -2.2
518,956 + LRK54_RS02385 0.57 -0.2
518,956 + LRK54_RS02385 0.57 +0.3
518,957 - LRK54_RS02385 0.57 +0.3
518,957 - LRK54_RS02385 0.57 -0.6
519,022 + LRK54_RS02385 0.64 +0.4
519,022 + LRK54_RS02385 0.64 +0.4
519,022 + LRK54_RS02385 0.64 -1.3
519,022 + LRK54_RS02385 0.64 -0.1
519,022 + LRK54_RS02385 0.64 -1.1
519,022 + LRK54_RS02385 0.64 -0.6
519,023 - LRK54_RS02385 0.64 -0.5
519,023 - LRK54_RS02385 0.64 +1.0
519,025 + LRK54_RS02385 0.64 +0.5
519,025 + LRK54_RS02385 0.64 +0.5
519,025 + LRK54_RS02385 0.64 +0.6
519,025 + LRK54_RS02385 0.64 -0.2
519,025 + LRK54_RS02385 0.64 -0.5
519,026 - LRK54_RS02385 0.64 -1.2
519,026 - LRK54_RS02385 0.64 -0.5
519,026 - LRK54_RS02385 0.64 +1.4
519,026 - LRK54_RS02385 0.64 +0.6
519,026 - LRK54_RS02385 0.64 -1.3
519,026 - LRK54_RS02385 0.64 -0.3
519,026 - LRK54_RS02385 0.64 -0.1
519,026 - LRK54_RS02385 0.64 -0.8
519,046 + LRK54_RS02385 0.66 +0.5
519,047 - LRK54_RS02385 0.67 -0.9
519,190 + LRK54_RS02385 0.82 +0.3
519,190 + LRK54_RS02385 0.82 +0.3
519,190 + LRK54_RS02385 0.82 -0.5
519,190 + LRK54_RS02385 0.82 +0.5
519,191 - LRK54_RS02385 0.82 -0.4
519,191 - LRK54_RS02385 0.82 +0.3
519,342 + +0.4
519,342 + +0.5
519,343 - -0.6

Or see this region's nucleotide sequence