Experiment: R2A with FW104 filtrate 0.5 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS02265 and LRK54_RS02270 overlap by 4 nucleotides LRK54_RS02270 and LRK54_RS02275 are separated by 120 nucleotides LRK54_RS02275 and LRK54_RS02280 are separated by 93 nucleotides
LRK54_RS02265: LRK54_RS02265 - ferrous iron transporter B, at 493,893 to 495,728
_RS02265
LRK54_RS02270: LRK54_RS02270 - ferrous iron transport protein A, at 495,725 to 495,970
_RS02270
LRK54_RS02275: LRK54_RS02275 - enoyl-CoA hydratase-related protein, at 496,091 to 496,888
_RS02275
LRK54_RS02280: LRK54_RS02280 - ATP-grasp domain-containing protein, at 496,982 to 498,973
_RS02280
Position (kb) 496
497 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 495.270 kb on + strand, within LRK54_RS02265 at 495.478 kb on + strand, within LRK54_RS02265 at 495.478 kb on + strand, within LRK54_RS02265 at 495.478 kb on + strand, within LRK54_RS02265 at 495.479 kb on - strand, within LRK54_RS02265 at 495.479 kb on - strand, within LRK54_RS02265 at 495.479 kb on - strand, within LRK54_RS02265 at 495.479 kb on - strand, within LRK54_RS02265 at 495.538 kb on + strand, within LRK54_RS02265 at 495.538 kb on + strand, within LRK54_RS02265 at 495.538 kb on + strand, within LRK54_RS02265 at 495.538 kb on + strand, within LRK54_RS02265 at 495.538 kb on + strand, within LRK54_RS02265 at 495.539 kb on - strand, within LRK54_RS02265 at 495.539 kb on - strand, within LRK54_RS02265 at 495.539 kb on - strand, within LRK54_RS02265 at 495.539 kb on - strand, within LRK54_RS02265 at 495.625 kb on + strand at 495.625 kb on + strand at 495.625 kb on + strand at 495.625 kb on + strand at 495.625 kb on + strand at 495.625 kb on + strand at 495.625 kb on + strand at 495.625 kb on + strand at 495.625 kb on + strand at 495.625 kb on + strand at 495.625 kb on + strand at 495.625 kb on + strand at 495.625 kb on + strand at 495.625 kb on + strand at 495.625 kb on + strand at 495.625 kb on + strand at 495.625 kb on + strand at 495.625 kb on + strand at 495.625 kb on + strand at 495.625 kb on + strand at 495.626 kb on - strand at 495.626 kb on - strand at 495.626 kb on - strand at 495.626 kb on - strand at 495.626 kb on - strand at 495.626 kb on - strand at 495.626 kb on - strand at 495.626 kb on - strand at 495.626 kb on - strand at 495.626 kb on - strand at 495.626 kb on - strand at 495.626 kb on - strand at 495.626 kb on - strand at 495.626 kb on - strand at 495.626 kb on - strand at 495.626 kb on - strand at 495.626 kb on - strand at 495.987 kb on + strand at 495.988 kb on - strand at 495.988 kb on - strand at 495.993 kb on + strand at 495.993 kb on + strand at 495.993 kb on + strand at 495.993 kb on + strand at 495.993 kb on + strand at 495.993 kb on + strand at 495.994 kb on - strand at 495.994 kb on - strand at 495.994 kb on - strand at 496.005 kb on + strand at 496.005 kb on + strand at 496.005 kb on + strand at 496.006 kb on - strand at 496.059 kb on + strand at 496.059 kb on + strand at 496.059 kb on + strand at 496.059 kb on + strand at 496.059 kb on + strand at 496.059 kb on + strand at 496.060 kb on - strand at 496.060 kb on - strand at 496.060 kb on - strand at 496.060 kb on - strand at 496.060 kb on - strand at 496.060 kb on - strand at 496.060 kb on - strand at 496.060 kb on - strand at 496.060 kb on - strand at 496.060 kb on - strand at 496.060 kb on - strand at 496.060 kb on - strand at 496.070 kb on + strand at 496.070 kb on + strand at 496.070 kb on + strand at 496.070 kb on + strand at 496.070 kb on + strand at 496.070 kb on + strand at 496.070 kb on + strand at 496.071 kb on - strand at 496.071 kb on - strand at 496.071 kb on - strand at 496.071 kb on - strand at 496.071 kb on - strand at 496.419 kb on - strand, within LRK54_RS02275 at 496.419 kb on - strand, within LRK54_RS02275 at 496.532 kb on + strand, within LRK54_RS02275 at 496.532 kb on + strand, within LRK54_RS02275 at 496.532 kb on + strand, within LRK54_RS02275 at 496.532 kb on + strand, within LRK54_RS02275 at 496.532 kb on + strand, within LRK54_RS02275 at 496.532 kb on + strand, within LRK54_RS02275 at 496.532 kb on + strand, within LRK54_RS02275 at 496.533 kb on - strand, within LRK54_RS02275 at 496.533 kb on - strand, within LRK54_RS02275 at 496.533 kb on - strand, within LRK54_RS02275 at 496.533 kb on - strand, within LRK54_RS02275 at 496.533 kb on - strand, within LRK54_RS02275 at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.886 kb on + strand at 496.887 kb on + strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.887 kb on - strand at 496.935 kb on + strand at 496.935 kb on + strand at 496.936 kb on - strand at 496.936 kb on - strand at 496.944 kb on + strand at 496.944 kb on + strand at 496.944 kb on + strand at 496.944 kb on + strand at 496.944 kb on + strand at 496.944 kb on + strand at 496.944 kb on + strand at 496.944 kb on + strand at 496.944 kb on + strand at 496.945 kb on - strand at 496.945 kb on - strand at 496.945 kb on - strand at 496.995 kb on + strand at 496.995 kb on + strand at 496.995 kb on + strand at 496.996 kb on - strand at 496.996 kb on - strand at 496.996 kb on - strand at 496.996 kb on - strand at 496.996 kb on - strand at 496.996 kb on - strand at 496.996 kb on - strand at 496.996 kb on - strand at 497.075 kb on + strand at 497.075 kb on + strand at 497.075 kb on + strand at 497.075 kb on + strand at 497.075 kb on + strand at 497.075 kb on + strand at 497.075 kb on + strand at 497.075 kb on + strand at 497.076 kb on - strand at 497.076 kb on - strand at 497.076 kb on - strand at 497.076 kb on - strand at 497.076 kb on - strand at 497.076 kb on - strand at 497.076 kb on - strand at 497.159 kb on + strand at 497.159 kb on + strand at 497.159 kb on + strand at 497.159 kb on + strand at 497.159 kb on + strand at 497.159 kb on + strand at 497.159 kb on + strand at 497.160 kb on - strand at 497.160 kb on - strand at 497.160 kb on - strand at 497.160 kb on - strand at 497.160 kb on - strand at 497.160 kb on - strand at 497.225 kb on + strand, within LRK54_RS02280 at 497.225 kb on + strand, within LRK54_RS02280 at 497.225 kb on + strand, within LRK54_RS02280 at 497.225 kb on + strand, within LRK54_RS02280 at 497.226 kb on - strand, within LRK54_RS02280 at 497.365 kb on - strand, within LRK54_RS02280 at 497.381 kb on + strand, within LRK54_RS02280 at 497.585 kb on + strand, within LRK54_RS02280 at 497.585 kb on + strand, within LRK54_RS02280 at 497.585 kb on + strand, within LRK54_RS02280 at 497.585 kb on + strand, within LRK54_RS02280 at 497.585 kb on + strand, within LRK54_RS02280 at 497.585 kb on + strand, within LRK54_RS02280 at 497.585 kb on + strand, within LRK54_RS02280 at 497.585 kb on + strand, within LRK54_RS02280 at 497.585 kb on + strand, within LRK54_RS02280 at 497.586 kb on - strand, within LRK54_RS02280 at 497.586 kb on - strand, within LRK54_RS02280 at 497.586 kb on - strand, within LRK54_RS02280 at 497.586 kb on - strand, within LRK54_RS02280 at 497.586 kb on - strand, within LRK54_RS02280 at 497.586 kb on - strand, within LRK54_RS02280 at 497.586 kb on - strand, within LRK54_RS02280 at 497.586 kb on - strand, within LRK54_RS02280 at 497.586 kb on - strand, within LRK54_RS02280 at 497.783 kb on + strand, within LRK54_RS02280 at 497.783 kb on + strand, within LRK54_RS02280 at 497.783 kb on + strand, within LRK54_RS02280 at 497.783 kb on + strand, within LRK54_RS02280 at 497.784 kb on - strand, within LRK54_RS02280 at 497.784 kb on - strand, within LRK54_RS02280 at 497.784 kb on - strand, within LRK54_RS02280 at 497.784 kb on - strand, within LRK54_RS02280 at 497.784 kb on - strand, within LRK54_RS02280 at 497.784 kb on - strand, within LRK54_RS02280 at 497.784 kb on - strand, within LRK54_RS02280 at 497.784 kb on - strand, within LRK54_RS02280 at 497.784 kb on - strand, within LRK54_RS02280 at 497.784 kb on - strand, within LRK54_RS02280
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X remove 495,270 + LRK54_RS02265 0.75 -1.2 495,478 + LRK54_RS02265 0.86 +0.3 495,478 + LRK54_RS02265 0.86 +1.0 495,478 + LRK54_RS02265 0.86 +1.3 495,479 - LRK54_RS02265 0.86 +0.5 495,479 - LRK54_RS02265 0.86 +1.3 495,479 - LRK54_RS02265 0.86 +0.2 495,479 - LRK54_RS02265 0.86 +0.2 495,538 + LRK54_RS02265 0.90 -0.9 495,538 + LRK54_RS02265 0.90 +1.6 495,538 + LRK54_RS02265 0.90 +0.4 495,538 + LRK54_RS02265 0.90 +0.9 495,538 + LRK54_RS02265 0.90 -0.1 495,539 - LRK54_RS02265 0.90 +0.2 495,539 - LRK54_RS02265 0.90 -0.1 495,539 - LRK54_RS02265 0.90 -0.4 495,539 - LRK54_RS02265 0.90 -0.1 495,625 + -0.2 495,625 + +0.1 495,625 + +2.3 495,625 + -0.4 495,625 + -0.4 495,625 + -0.1 495,625 + +0.1 495,625 + -1.3 495,625 + +0.5 495,625 + +0.9 495,625 + -0.3 495,625 + -1.2 495,625 + -0.5 495,625 + -1.2 495,625 + +0.3 495,625 + -1.7 495,625 + -0.8 495,625 + +0.3 495,625 + -0.4 495,625 + +1.0 495,626 - -1.1 495,626 - -0.8 495,626 - +1.2 495,626 - +0.8 495,626 - -0.0 495,626 - +0.1 495,626 - -1.5 495,626 - -0.7 495,626 - +0.7 495,626 - -0.1 495,626 - -0.4 495,626 - -1.3 495,626 - -0.6 495,626 - -0.6 495,626 - -0.9 495,626 - -0.5 495,626 - +1.3 495,987 + +0.1 495,988 - -0.4 495,988 - +1.8 495,993 + +0.0 495,993 + -0.6 495,993 + +2.3 495,993 + +0.3 495,993 + -0.1 495,993 + -1.8 495,994 - +0.6 495,994 - -0.7 495,994 - -0.2 496,005 + -0.5 496,005 + -1.0 496,005 + +1.7 496,006 - -1.1 496,059 + -0.5 496,059 + -0.5 496,059 + -0.6 496,059 + +0.3 496,059 + +1.5 496,059 + -0.1 496,060 - -0.1 496,060 - -0.9 496,060 - +0.7 496,060 - -0.4 496,060 - +0.3 496,060 - +0.0 496,060 - -0.5 496,060 - +0.1 496,060 - -0.4 496,060 - +0.9 496,060 - -0.8 496,060 - +1.3 496,070 + +1.7 496,070 + -0.5 496,070 + -0.3 496,070 + +0.2 496,070 + -1.1 496,070 + -0.5 496,070 + +3.8 496,071 - -1.6 496,071 - -0.7 496,071 - +2.8 496,071 - -0.5 496,071 - -1.1 496,419 - LRK54_RS02275 0.41 -0.7 496,419 - LRK54_RS02275 0.41 -0.7 496,532 + LRK54_RS02275 0.55 -1.2 496,532 + LRK54_RS02275 0.55 -1.5 496,532 + LRK54_RS02275 0.55 -2.5 496,532 + LRK54_RS02275 0.55 -0.9 496,532 + LRK54_RS02275 0.55 -2.3 496,532 + LRK54_RS02275 0.55 -1.4 496,532 + LRK54_RS02275 0.55 -1.4 496,533 - LRK54_RS02275 0.55 -2.7 496,533 - LRK54_RS02275 0.55 +1.3 496,533 - LRK54_RS02275 0.55 -3.1 496,533 - LRK54_RS02275 0.55 -2.8 496,533 - LRK54_RS02275 0.55 +0.3 496,886 + -1.2 496,886 + +0.5 496,886 + -0.2 496,886 + -0.2 496,886 + -0.5 496,886 + -0.0 496,886 + -1.0 496,886 + -0.3 496,886 + +1.3 496,886 + -0.8 496,886 + -1.6 496,886 + +0.2 496,886 + -0.3 496,886 + -0.1 496,886 + +0.2 496,886 + -0.5 496,886 + -1.1 496,886 + +0.1 496,886 + +0.1 496,886 + +1.6 496,886 + +0.1 496,886 + +0.5 496,886 + -0.3 496,886 + +0.2 496,886 + -0.1 496,886 + -1.2 496,886 + -0.4 496,886 + -0.5 496,886 + +0.7 496,886 + -1.0 496,886 + +1.3 496,886 + +0.2 496,886 + -0.2 496,886 + +0.0 496,886 + -1.5 496,886 + +1.0 496,886 + -0.1 496,886 + +1.3 496,886 + -0.1 496,886 + +0.6 496,886 + -0.2 496,886 + +1.1 496,886 + +0.8 496,886 + -2.3 496,886 + -0.5 496,886 + -1.7 496,886 + -1.1 496,886 + -0.8 496,886 + -0.5 496,886 + -0.2 496,886 + +0.3 496,886 + +1.0 496,886 + +0.1 496,886 + -1.1 496,886 + -0.1 496,886 + -0.1 496,886 + -0.1 496,886 + +0.4 496,886 + -0.4 496,887 + -1.2 496,887 - -0.8 496,887 - -0.5 496,887 - -0.9 496,887 - -0.1 496,887 - -0.3 496,887 - +0.8 496,887 - -0.8 496,887 - -1.2 496,887 - -2.1 496,887 - -0.5 496,887 - +0.5 496,887 - -0.2 496,887 - -0.3 496,887 - +0.7 496,887 - -0.7 496,887 - -1.0 496,887 - -0.2 496,887 - -0.8 496,887 - +1.1 496,887 - -1.0 496,887 - -0.5 496,887 - +0.1 496,887 - +0.4 496,887 - -0.3 496,887 - -0.2 496,887 - +0.3 496,887 - +2.3 496,887 - -1.2 496,887 - +0.1 496,887 - +0.1 496,887 - -0.3 496,887 - -0.4 496,887 - +0.8 496,887 - -0.2 496,887 - -0.2 496,887 - -1.1 496,887 - -0.3 496,887 - +0.7 496,887 - -0.8 496,887 - +0.1 496,887 - -0.2 496,887 - -0.6 496,887 - +0.5 496,887 - +0.2 496,887 - +1.2 496,887 - -0.7 496,887 - +0.4 496,887 - -1.9 496,887 - -1.5 496,887 - +0.4 496,887 - -0.8 496,887 - -1.1 496,887 - -0.1 496,887 - -0.7 496,887 - +0.6 496,887 - -1.0 496,887 - +0.6 496,887 - +0.0 496,887 - +0.3 496,935 + -0.5 496,935 + -0.8 496,936 - -0.5 496,936 - +0.0 496,944 + -1.3 496,944 + +0.6 496,944 + -0.0 496,944 + -0.6 496,944 + +0.5 496,944 + -0.4 496,944 + +0.0 496,944 + +0.2 496,944 + +0.1 496,945 - -0.1 496,945 - +0.3 496,945 - +0.5 496,995 + -0.1 496,995 + -0.4 496,995 + -0.7 496,996 - -0.5 496,996 - -1.3 496,996 - -0.6 496,996 - -0.9 496,996 - -1.3 496,996 - +0.5 496,996 - -0.1 496,996 - -0.9 497,075 + -1.9 497,075 + +0.8 497,075 + +1.1 497,075 + +0.7 497,075 + -0.1 497,075 + +0.7 497,075 + -0.5 497,075 + -0.4 497,076 - -1.2 497,076 - -1.6 497,076 - +0.5 497,076 - +0.5 497,076 - -0.5 497,076 - -0.1 497,076 - -0.1 497,159 + -1.0 497,159 + +0.6 497,159 + -0.5 497,159 + -0.7 497,159 + +0.2 497,159 + -0.5 497,159 + -1.1 497,160 - -0.4 497,160 - -0.9 497,160 - +1.7 497,160 - +0.9 497,160 - -0.7 497,160 - +0.9 497,225 + LRK54_RS02280 0.12 +0.7 497,225 + LRK54_RS02280 0.12 -1.6 497,225 + LRK54_RS02280 0.12 +0.8 497,225 + LRK54_RS02280 0.12 -1.4 497,226 - LRK54_RS02280 0.12 +0.2 497,365 - LRK54_RS02280 0.19 +0.4 497,381 + LRK54_RS02280 0.20 -1.5 497,585 + LRK54_RS02280 0.30 -0.3 497,585 + LRK54_RS02280 0.30 -0.4 497,585 + LRK54_RS02280 0.30 -0.1 497,585 + LRK54_RS02280 0.30 -1.4 497,585 + LRK54_RS02280 0.30 +0.6 497,585 + LRK54_RS02280 0.30 -0.2 497,585 + LRK54_RS02280 0.30 +0.3 497,585 + LRK54_RS02280 0.30 +0.9 497,585 + LRK54_RS02280 0.30 +1.3 497,586 - LRK54_RS02280 0.30 -0.2 497,586 - LRK54_RS02280 0.30 +0.7 497,586 - LRK54_RS02280 0.30 -0.8 497,586 - LRK54_RS02280 0.30 +0.7 497,586 - LRK54_RS02280 0.30 +0.7 497,586 - LRK54_RS02280 0.30 -0.0 497,586 - LRK54_RS02280 0.30 -1.1 497,586 - LRK54_RS02280 0.30 -0.5 497,586 - LRK54_RS02280 0.30 -0.1 497,783 + LRK54_RS02280 0.40 +1.5 497,783 + LRK54_RS02280 0.40 -0.3 497,783 + LRK54_RS02280 0.40 -0.8 497,783 + LRK54_RS02280 0.40 +0.7 497,784 - LRK54_RS02280 0.40 -0.5 497,784 - LRK54_RS02280 0.40 -0.2 497,784 - LRK54_RS02280 0.40 -0.8 497,784 - LRK54_RS02280 0.40 -0.9 497,784 - LRK54_RS02280 0.40 -1.0 497,784 - LRK54_RS02280 0.40 -0.5 497,784 - LRK54_RS02280 0.40 +1.1 497,784 - LRK54_RS02280 0.40 -0.6 497,784 - LRK54_RS02280 0.40 -0.9 497,784 - LRK54_RS02280 0.40 +0.5
Or see this region's nucleotide sequence