Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS02180

Experiment: R2A with FW104 filtrate 0.5 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS02175 and LRK54_RS02180 overlap by 4 nucleotidesLRK54_RS02180 and LRK54_RS02185 overlap by 4 nucleotides LRK54_RS02175: LRK54_RS02175 - exodeoxyribonuclease V subunit gamma, at 466,971 to 470,414 _RS02175 LRK54_RS02180: LRK54_RS02180 - UvrD-helicase domain-containing protein, at 470,411 to 473,992 _RS02180 LRK54_RS02185: LRK54_RS02185 - exodeoxyribonuclease V subunit alpha, at 473,989 to 475,830 _RS02185 Position (kb) 470 471 472 473 474Strain fitness (log2 ratio) -2 -1 0 1 2 3at 469.837 kb on + strand, within LRK54_RS02175at 469.837 kb on + strand, within LRK54_RS02175at 469.838 kb on - strand, within LRK54_RS02175at 469.920 kb on + strand, within LRK54_RS02175at 469.920 kb on + strand, within LRK54_RS02175at 469.920 kb on + strand, within LRK54_RS02175at 469.920 kb on + strand, within LRK54_RS02175at 469.920 kb on + strand, within LRK54_RS02175at 469.920 kb on + strand, within LRK54_RS02175at 469.920 kb on + strand, within LRK54_RS02175at 469.920 kb on + strand, within LRK54_RS02175at 469.920 kb on + strand, within LRK54_RS02175at 469.921 kb on - strand, within LRK54_RS02175at 469.921 kb on - strand, within LRK54_RS02175at 470.254 kb on - strandat 470.254 kb on - strandat 470.522 kb on + strandat 470.522 kb on + strandat 470.522 kb on + strandat 470.522 kb on + strandat 470.522 kb on + strandat 470.522 kb on + strandat 470.522 kb on + strandat 470.523 kb on - strandat 470.523 kb on - strandat 470.523 kb on - strandat 470.523 kb on - strandat 470.556 kb on + strandat 470.557 kb on - strandat 470.924 kb on + strand, within LRK54_RS02180at 470.925 kb on - strand, within LRK54_RS02180at 470.925 kb on - strand, within LRK54_RS02180at 471.134 kb on + strand, within LRK54_RS02180at 471.134 kb on + strand, within LRK54_RS02180at 471.134 kb on + strand, within LRK54_RS02180at 471.134 kb on + strand, within LRK54_RS02180at 471.134 kb on + strand, within LRK54_RS02180at 471.135 kb on - strand, within LRK54_RS02180at 471.135 kb on - strand, within LRK54_RS02180at 471.252 kb on + strand, within LRK54_RS02180at 471.464 kb on + strand, within LRK54_RS02180at 471.464 kb on + strand, within LRK54_RS02180at 471.464 kb on + strand, within LRK54_RS02180at 471.465 kb on - strand, within LRK54_RS02180at 471.593 kb on + strand, within LRK54_RS02180at 471.594 kb on - strand, within LRK54_RS02180at 471.644 kb on + strand, within LRK54_RS02180at 471.644 kb on + strand, within LRK54_RS02180at 471.644 kb on + strand, within LRK54_RS02180at 471.644 kb on + strand, within LRK54_RS02180at 471.644 kb on + strand, within LRK54_RS02180at 471.644 kb on + strand, within LRK54_RS02180at 471.644 kb on + strand, within LRK54_RS02180at 471.645 kb on - strand, within LRK54_RS02180at 471.645 kb on - strand, within LRK54_RS02180at 471.645 kb on - strand, within LRK54_RS02180at 471.645 kb on - strandat 471.645 kb on - strand, within LRK54_RS02180at 471.645 kb on - strand, within LRK54_RS02180at 471.645 kb on - strand, within LRK54_RS02180at 471.645 kb on - strand, within LRK54_RS02180at 471.645 kb on - strand, within LRK54_RS02180at 471.645 kb on - strand, within LRK54_RS02180at 471.767 kb on + strand, within LRK54_RS02180at 471.851 kb on + strand, within LRK54_RS02180at 471.851 kb on + strand, within LRK54_RS02180at 471.851 kb on + strand, within LRK54_RS02180at 471.851 kb on + strand, within LRK54_RS02180at 471.852 kb on - strand, within LRK54_RS02180at 471.852 kb on - strand, within LRK54_RS02180at 471.852 kb on - strand, within LRK54_RS02180at 471.852 kb on - strand, within LRK54_RS02180at 472.190 kb on + strand, within LRK54_RS02180at 472.190 kb on + strand, within LRK54_RS02180at 472.190 kb on + strand, within LRK54_RS02180at 472.190 kb on + strand, within LRK54_RS02180at 472.190 kb on + strand, within LRK54_RS02180at 472.190 kb on + strand, within LRK54_RS02180at 472.190 kb on + strand, within LRK54_RS02180at 472.191 kb on - strand, within LRK54_RS02180at 472.505 kb on + strand, within LRK54_RS02180at 472.505 kb on + strand, within LRK54_RS02180at 472.505 kb on + strand, within LRK54_RS02180at 472.506 kb on - strand, within LRK54_RS02180at 472.506 kb on - strand, within LRK54_RS02180at 472.694 kb on + strand, within LRK54_RS02180at 472.694 kb on + strand, within LRK54_RS02180at 472.694 kb on + strand, within LRK54_RS02180at 472.694 kb on + strand, within LRK54_RS02180at 472.694 kb on + strand, within LRK54_RS02180at 472.694 kb on + strand, within LRK54_RS02180at 472.695 kb on - strand, within LRK54_RS02180at 472.695 kb on - strand, within LRK54_RS02180at 472.695 kb on - strand, within LRK54_RS02180at 472.715 kb on + strand, within LRK54_RS02180at 472.823 kb on + strand, within LRK54_RS02180at 472.823 kb on + strand, within LRK54_RS02180at 472.823 kb on + strand, within LRK54_RS02180at 472.823 kb on + strand, within LRK54_RS02180at 472.823 kb on + strand, within LRK54_RS02180at 472.824 kb on - strand, within LRK54_RS02180at 472.824 kb on - strand, within LRK54_RS02180at 472.862 kb on + strand, within LRK54_RS02180at 472.862 kb on + strand, within LRK54_RS02180at 472.863 kb on - strand, within LRK54_RS02180at 472.863 kb on - strand, within LRK54_RS02180at 472.863 kb on - strand, within LRK54_RS02180at 472.863 kb on - strand, within LRK54_RS02180at 473.038 kb on + strand, within LRK54_RS02180at 473.693 kb on + strandat 473.693 kb on + strandat 473.693 kb on + strandat 473.694 kb on - strandat 473.694 kb on - strandat 473.694 kb on - strandat 473.694 kb on - strandat 473.792 kb on + strandat 473.792 kb on + strandat 473.792 kb on + strandat 473.792 kb on + strandat 473.792 kb on + strandat 473.793 kb on - strandat 473.793 kb on - strandat 473.839 kb on + strandat 473.840 kb on - strandat 473.840 kb on - strandat 473.871 kb on - strandat 473.914 kb on - strandat 473.914 kb on - strandat 473.914 kb on - strandat 473.914 kb on - strandat 474.265 kb on + strand, within LRK54_RS02185at 474.265 kb on + strand, within LRK54_RS02185at 474.265 kb on + strand, within LRK54_RS02185at 474.265 kb on + strand, within LRK54_RS02185at 474.266 kb on - strand, within LRK54_RS02185at 474.266 kb on - strand, within LRK54_RS02185at 474.266 kb on - strand, within LRK54_RS02185at 474.266 kb on - strand, within LRK54_RS02185at 474.861 kb on - strand, within LRK54_RS02185

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X
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469,837 + LRK54_RS02175 0.83 -0.5
469,837 + LRK54_RS02175 0.83 -0.3
469,838 - LRK54_RS02175 0.83 -0.3
469,920 + LRK54_RS02175 0.86 +0.7
469,920 + LRK54_RS02175 0.86 -0.2
469,920 + LRK54_RS02175 0.86 +0.4
469,920 + LRK54_RS02175 0.86 -1.4
469,920 + LRK54_RS02175 0.86 +2.3
469,920 + LRK54_RS02175 0.86 -0.9
469,920 + LRK54_RS02175 0.86 +1.3
469,920 + LRK54_RS02175 0.86 -0.9
469,920 + LRK54_RS02175 0.86 -0.3
469,921 - LRK54_RS02175 0.86 -0.5
469,921 - LRK54_RS02175 0.86 -0.8
470,254 - +0.5
470,254 - -1.3
470,522 + +0.2
470,522 + -1.1
470,522 + +0.7
470,522 + +0.9
470,522 + +0.9
470,522 + +0.3
470,522 + +0.3
470,523 - -0.7
470,523 - -0.9
470,523 - -1.5
470,523 - -0.1
470,556 + -1.4
470,557 - -0.5
470,924 + LRK54_RS02180 0.14 +1.5
470,925 - LRK54_RS02180 0.14 +1.3
470,925 - LRK54_RS02180 0.14 -1.6
471,134 + LRK54_RS02180 0.20 +1.7
471,134 + LRK54_RS02180 0.20 -0.7
471,134 + LRK54_RS02180 0.20 +0.8
471,134 + LRK54_RS02180 0.20 -0.6
471,134 + LRK54_RS02180 0.20 -0.6
471,135 - LRK54_RS02180 0.20 -1.2
471,135 - LRK54_RS02180 0.20 -1.5
471,252 + LRK54_RS02180 0.23 -0.8
471,464 + LRK54_RS02180 0.29 +1.0
471,464 + LRK54_RS02180 0.29 +0.3
471,464 + LRK54_RS02180 0.29 -2.3
471,465 - LRK54_RS02180 0.29 -0.5
471,593 + LRK54_RS02180 0.33 -0.3
471,594 - LRK54_RS02180 0.33 +1.5
471,644 + LRK54_RS02180 0.34 -0.5
471,644 + LRK54_RS02180 0.34 -0.1
471,644 + LRK54_RS02180 0.34 -0.2
471,644 + LRK54_RS02180 0.34 -1.6
471,644 + LRK54_RS02180 0.34 +0.5
471,644 + LRK54_RS02180 0.34 -1.9
471,644 + LRK54_RS02180 0.34 -0.9
471,645 - LRK54_RS02180 0.34 -0.7
471,645 - LRK54_RS02180 0.34 +1.0
471,645 - LRK54_RS02180 0.34 -0.1
471,645 - -0.1
471,645 - LRK54_RS02180 0.34 -0.7
471,645 - LRK54_RS02180 0.34 -1.1
471,645 - LRK54_RS02180 0.34 -0.5
471,645 - LRK54_RS02180 0.34 -0.5
471,645 - LRK54_RS02180 0.34 +1.3
471,645 - LRK54_RS02180 0.34 +0.3
471,767 + LRK54_RS02180 0.38 -1.2
471,851 + LRK54_RS02180 0.40 -0.7
471,851 + LRK54_RS02180 0.40 -1.4
471,851 + LRK54_RS02180 0.40 -0.5
471,851 + LRK54_RS02180 0.40 +0.1
471,852 - LRK54_RS02180 0.40 +0.3
471,852 - LRK54_RS02180 0.40 -0.4
471,852 - LRK54_RS02180 0.40 -0.3
471,852 - LRK54_RS02180 0.40 -1.1
472,190 + LRK54_RS02180 0.50 +0.9
472,190 + LRK54_RS02180 0.50 -1.3
472,190 + LRK54_RS02180 0.50 -0.3
472,190 + LRK54_RS02180 0.50 -0.9
472,190 + LRK54_RS02180 0.50 +1.3
472,190 + LRK54_RS02180 0.50 -0.5
472,190 + LRK54_RS02180 0.50 +1.1
472,191 - LRK54_RS02180 0.50 +0.9
472,505 + LRK54_RS02180 0.58 +0.3
472,505 + LRK54_RS02180 0.58 -1.9
472,505 + LRK54_RS02180 0.58 -1.6
472,506 - LRK54_RS02180 0.58 -0.9
472,506 - LRK54_RS02180 0.58 -0.7
472,694 + LRK54_RS02180 0.64 -0.9
472,694 + LRK54_RS02180 0.64 -0.1
472,694 + LRK54_RS02180 0.64 +0.7
472,694 + LRK54_RS02180 0.64 -0.9
472,694 + LRK54_RS02180 0.64 -0.5
472,694 + LRK54_RS02180 0.64 -0.3
472,695 - LRK54_RS02180 0.64 -1.1
472,695 - LRK54_RS02180 0.64 +0.9
472,695 - LRK54_RS02180 0.64 -0.8
472,715 + LRK54_RS02180 0.64 -1.4
472,823 + LRK54_RS02180 0.67 +1.7
472,823 + LRK54_RS02180 0.67 +0.5
472,823 + LRK54_RS02180 0.67 +1.3
472,823 + LRK54_RS02180 0.67 -1.2
472,823 + LRK54_RS02180 0.67 -0.5
472,824 - LRK54_RS02180 0.67 +0.2
472,824 - LRK54_RS02180 0.67 -1.3
472,862 + LRK54_RS02180 0.68 -1.4
472,862 + LRK54_RS02180 0.68 +0.3
472,863 - LRK54_RS02180 0.68 +0.5
472,863 - LRK54_RS02180 0.68 -0.1
472,863 - LRK54_RS02180 0.68 +0.3
472,863 - LRK54_RS02180 0.68 +0.5
473,038 + LRK54_RS02180 0.73 -1.5
473,693 + -0.5
473,693 + -0.7
473,693 + +0.7
473,694 - -0.5
473,694 - -0.3
473,694 - -1.3
473,694 - +0.3
473,792 + +0.3
473,792 + -0.1
473,792 + -1.1
473,792 + +1.9
473,792 + +2.9
473,793 - +0.7
473,793 - -0.5
473,839 + -1.1
473,840 - +0.3
473,840 - +0.8
473,871 - -0.3
473,914 - -1.3
473,914 - +0.3
473,914 - -0.6
473,914 - +0.4
474,265 + LRK54_RS02185 0.15 -1.5
474,265 + LRK54_RS02185 0.15 +0.7
474,265 + LRK54_RS02185 0.15 -0.5
474,265 + LRK54_RS02185 0.15 -1.9
474,266 - LRK54_RS02185 0.15 -1.4
474,266 - LRK54_RS02185 0.15 +2.7
474,266 - LRK54_RS02185 0.15 -0.1
474,266 - LRK54_RS02185 0.15 -0.3
474,861 - LRK54_RS02185 0.47 +0.0

Or see this region's nucleotide sequence