Experiment: R2A with FW104 filtrate 0.5 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS01950 and LRK54_RS01955 overlap by 4 nucleotides LRK54_RS01955 and LRK54_RS01960 overlap by 4 nucleotides
LRK54_RS01950: LRK54_RS01950 - MBL fold metallo-hydrolase, at 411,550 to 412,935
_RS01950
LRK54_RS01955: LRK54_RS01955 - thymidine phosphorylase family protein, at 412,932 to 414,443
_RS01955
LRK54_RS01960: LRK54_RS01960 - ribose-phosphate pyrophosphokinase, at 414,440 to 415,351
_RS01960
Position (kb) 412
413
414
415 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 411.940 kb on + strand, within LRK54_RS01950 at 411.940 kb on + strand, within LRK54_RS01950 at 411.940 kb on + strand, within LRK54_RS01950 at 411.940 kb on + strand, within LRK54_RS01950 at 412.115 kb on + strand, within LRK54_RS01950 at 412.192 kb on + strand, within LRK54_RS01950 at 412.193 kb on - strand, within LRK54_RS01950 at 412.193 kb on - strand, within LRK54_RS01950 at 412.193 kb on - strand, within LRK54_RS01950 at 412.193 kb on - strand, within LRK54_RS01950 at 412.193 kb on - strand, within LRK54_RS01950 at 412.193 kb on - strand, within LRK54_RS01950 at 412.193 kb on - strand, within LRK54_RS01950 at 412.326 kb on + strand, within LRK54_RS01950 at 412.327 kb on - strand, within LRK54_RS01950 at 412.380 kb on + strand, within LRK54_RS01950 at 412.380 kb on + strand, within LRK54_RS01950 at 412.381 kb on - strand, within LRK54_RS01950 at 412.381 kb on - strand, within LRK54_RS01950 at 412.381 kb on - strand, within LRK54_RS01950 at 412.411 kb on + strand, within LRK54_RS01950 at 412.411 kb on + strand, within LRK54_RS01950 at 412.411 kb on + strand, within LRK54_RS01950 at 412.412 kb on - strand, within LRK54_RS01950 at 412.412 kb on - strand, within LRK54_RS01950 at 412.412 kb on - strand, within LRK54_RS01950 at 412.421 kb on - strand, within LRK54_RS01950 at 412.421 kb on - strand, within LRK54_RS01950 at 412.421 kb on - strand, within LRK54_RS01950 at 412.465 kb on + strand, within LRK54_RS01950 at 412.465 kb on + strand, within LRK54_RS01950 at 412.465 kb on + strand, within LRK54_RS01950 at 412.465 kb on + strand, within LRK54_RS01950 at 412.465 kb on + strand, within LRK54_RS01950 at 412.465 kb on + strand, within LRK54_RS01950 at 412.465 kb on + strand, within LRK54_RS01950 at 412.465 kb on + strand, within LRK54_RS01950 at 412.465 kb on + strand, within LRK54_RS01950 at 412.465 kb on + strand, within LRK54_RS01950 at 412.465 kb on + strand, within LRK54_RS01950 at 412.465 kb on + strand, within LRK54_RS01950 at 412.465 kb on + strand, within LRK54_RS01950 at 412.465 kb on + strand, within LRK54_RS01950 at 412.465 kb on + strand, within LRK54_RS01950 at 412.465 kb on + strand, within LRK54_RS01950 at 412.465 kb on + strand, within LRK54_RS01950 at 412.466 kb on - strand, within LRK54_RS01950 at 412.466 kb on - strand, within LRK54_RS01950 at 412.466 kb on - strand, within LRK54_RS01950 at 412.466 kb on - strand, within LRK54_RS01950 at 412.466 kb on - strand, within LRK54_RS01950 at 412.466 kb on - strand, within LRK54_RS01950 at 412.466 kb on - strand, within LRK54_RS01950 at 412.466 kb on - strand, within LRK54_RS01950 at 412.466 kb on - strand, within LRK54_RS01950 at 412.466 kb on - strand, within LRK54_RS01950 at 412.466 kb on - strand, within LRK54_RS01950 at 412.466 kb on - strand, within LRK54_RS01950 at 412.488 kb on + strand, within LRK54_RS01950 at 412.574 kb on + strand, within LRK54_RS01950 at 412.574 kb on + strand, within LRK54_RS01950 at 412.575 kb on - strand, within LRK54_RS01950 at 412.689 kb on + strand, within LRK54_RS01950 at 412.689 kb on + strand, within LRK54_RS01950 at 412.689 kb on + strand, within LRK54_RS01950 at 412.689 kb on + strand, within LRK54_RS01950 at 412.689 kb on + strand, within LRK54_RS01950 at 412.690 kb on - strand, within LRK54_RS01950 at 412.690 kb on - strand, within LRK54_RS01950 at 412.690 kb on - strand, within LRK54_RS01950 at 412.690 kb on - strand, within LRK54_RS01950 at 412.690 kb on - strand, within LRK54_RS01950 at 412.690 kb on - strand, within LRK54_RS01950 at 412.690 kb on - strand, within LRK54_RS01950 at 412.690 kb on - strand, within LRK54_RS01950 at 412.690 kb on - strand, within LRK54_RS01950 at 412.690 kb on - strand, within LRK54_RS01950 at 412.690 kb on - strand, within LRK54_RS01950 at 412.707 kb on - strand, within LRK54_RS01950 at 412.707 kb on - strand, within LRK54_RS01950 at 412.707 kb on - strand, within LRK54_RS01950 at 412.813 kb on + strand at 412.813 kb on + strand at 412.813 kb on + strand at 412.813 kb on + strand at 412.813 kb on + strand at 412.813 kb on + strand at 412.813 kb on + strand at 412.813 kb on + strand at 412.813 kb on + strand at 412.814 kb on - strand at 412.814 kb on - strand at 412.814 kb on - strand at 412.814 kb on - strand at 412.814 kb on - strand at 412.814 kb on - strand at 412.814 kb on - strand at 412.814 kb on - strand at 412.814 kb on - strand at 412.814 kb on - strand at 412.892 kb on + strand at 412.893 kb on - strand at 412.916 kb on + strand at 412.916 kb on + strand at 412.916 kb on + strand at 412.916 kb on + strand at 412.916 kb on + strand at 412.917 kb on - strand at 412.983 kb on + strand at 412.983 kb on + strand at 412.983 kb on + strand at 412.984 kb on - strand at 412.984 kb on - strand at 413.001 kb on + strand at 413.001 kb on + strand at 413.001 kb on + strand at 413.001 kb on + strand at 413.001 kb on + strand at 413.001 kb on + strand at 413.001 kb on + strand at 413.002 kb on - strand at 413.002 kb on - strand at 413.002 kb on - strand at 413.002 kb on - strand at 413.002 kb on - strand at 413.002 kb on - strand at 413.002 kb on - strand at 413.002 kb on - strand at 413.348 kb on + strand, within LRK54_RS01955 at 413.695 kb on + strand, within LRK54_RS01955 at 413.696 kb on - strand, within LRK54_RS01955 at 413.696 kb on - strand, within LRK54_RS01955 at 413.696 kb on - strand, within LRK54_RS01955 at 413.696 kb on - strand, within LRK54_RS01955 at 413.696 kb on - strand, within LRK54_RS01955 at 413.696 kb on - strand, within LRK54_RS01955 at 414.310 kb on + strand at 414.310 kb on + strand at 414.310 kb on + strand at 414.310 kb on + strand at 414.310 kb on + strand at 414.310 kb on + strand at 414.310 kb on + strand at 414.310 kb on + strand at 414.310 kb on + strand at 414.310 kb on + strand at 414.310 kb on + strand at 414.310 kb on + strand at 414.310 kb on + strand at 414.311 kb on - strand at 414.311 kb on - strand at 414.311 kb on - strand at 414.311 kb on - strand at 414.311 kb on - strand at 414.311 kb on - strand at 414.311 kb on - strand at 414.311 kb on - strand at 414.311 kb on - strand at 414.311 kb on - strand at 414.311 kb on - strand at 414.311 kb on - strand at 414.384 kb on + strand at 414.384 kb on + strand at 414.384 kb on + strand at 414.397 kb on - strand at 414.397 kb on - strand at 414.397 kb on - strand at 414.397 kb on - strand at 414.704 kb on + strand, within LRK54_RS01960 at 414.704 kb on + strand, within LRK54_RS01960 at 414.704 kb on + strand, within LRK54_RS01960 at 414.705 kb on - strand, within LRK54_RS01960 at 414.705 kb on - strand, within LRK54_RS01960 at 414.713 kb on + strand, within LRK54_RS01960 at 414.713 kb on + strand, within LRK54_RS01960 at 414.713 kb on + strand, within LRK54_RS01960 at 414.713 kb on + strand, within LRK54_RS01960 at 414.713 kb on + strand, within LRK54_RS01960 at 414.713 kb on + strand, within LRK54_RS01960 at 414.714 kb on - strand, within LRK54_RS01960 at 414.714 kb on - strand, within LRK54_RS01960 at 414.714 kb on - strand, within LRK54_RS01960 at 414.714 kb on - strand, within LRK54_RS01960 at 414.714 kb on - strand, within LRK54_RS01960 at 414.714 kb on - strand, within LRK54_RS01960 at 414.768 kb on - strand, within LRK54_RS01960 at 414.768 kb on - strand, within LRK54_RS01960 at 415.002 kb on + strand, within LRK54_RS01960 at 415.002 kb on + strand, within LRK54_RS01960 at 415.002 kb on + strand, within LRK54_RS01960 at 415.002 kb on + strand, within LRK54_RS01960 at 415.002 kb on + strand, within LRK54_RS01960 at 415.002 kb on + strand, within LRK54_RS01960 at 415.003 kb on - strand, within LRK54_RS01960 at 415.003 kb on - strand, within LRK54_RS01960 at 415.205 kb on + strand, within LRK54_RS01960 at 415.205 kb on + strand, within LRK54_RS01960 at 415.206 kb on - strand, within LRK54_RS01960 at 415.206 kb on - strand, within LRK54_RS01960 at 415.206 kb on - strand, within LRK54_RS01960 at 415.402 kb on + strand at 415.403 kb on - strand at 415.411 kb on + strand at 415.412 kb on - strand at 415.412 kb on - strand at 415.412 kb on - strand at 415.412 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X remove 411,940 + LRK54_RS01950 0.28 +0.7 411,940 + LRK54_RS01950 0.28 -0.3 411,940 + LRK54_RS01950 0.28 -0.5 411,940 + LRK54_RS01950 0.28 -0.7 412,115 + LRK54_RS01950 0.41 -1.4 412,192 + LRK54_RS01950 0.46 +0.5 412,193 - LRK54_RS01950 0.46 -0.3 412,193 - LRK54_RS01950 0.46 +0.2 412,193 - LRK54_RS01950 0.46 +0.2 412,193 - LRK54_RS01950 0.46 +1.6 412,193 - LRK54_RS01950 0.46 -1.2 412,193 - LRK54_RS01950 0.46 -0.3 412,193 - LRK54_RS01950 0.46 -1.0 412,326 + LRK54_RS01950 0.56 +0.2 412,327 - LRK54_RS01950 0.56 -0.6 412,380 + LRK54_RS01950 0.60 +0.3 412,380 + LRK54_RS01950 0.60 -0.6 412,381 - LRK54_RS01950 0.60 -0.8 412,381 - LRK54_RS01950 0.60 -0.2 412,381 - LRK54_RS01950 0.60 -0.9 412,411 + LRK54_RS01950 0.62 -1.0 412,411 + LRK54_RS01950 0.62 +0.6 412,411 + LRK54_RS01950 0.62 +0.1 412,412 - LRK54_RS01950 0.62 -0.7 412,412 - LRK54_RS01950 0.62 +0.3 412,412 - LRK54_RS01950 0.62 -0.7 412,421 - LRK54_RS01950 0.63 +0.4 412,421 - LRK54_RS01950 0.63 -0.5 412,421 - LRK54_RS01950 0.63 +0.5 412,465 + LRK54_RS01950 0.66 -0.0 412,465 + LRK54_RS01950 0.66 +0.1 412,465 + LRK54_RS01950 0.66 +2.2 412,465 + LRK54_RS01950 0.66 +0.3 412,465 + LRK54_RS01950 0.66 -0.3 412,465 + LRK54_RS01950 0.66 +0.2 412,465 + LRK54_RS01950 0.66 +0.4 412,465 + LRK54_RS01950 0.66 -0.1 412,465 + LRK54_RS01950 0.66 +0.7 412,465 + LRK54_RS01950 0.66 +0.8 412,465 + LRK54_RS01950 0.66 -0.7 412,465 + LRK54_RS01950 0.66 +0.5 412,465 + LRK54_RS01950 0.66 +1.0 412,465 + LRK54_RS01950 0.66 -2.0 412,465 + LRK54_RS01950 0.66 +0.9 412,465 + LRK54_RS01950 0.66 +0.3 412,465 + LRK54_RS01950 0.66 -0.7 412,466 - LRK54_RS01950 0.66 -2.2 412,466 - LRK54_RS01950 0.66 +0.5 412,466 - LRK54_RS01950 0.66 +0.1 412,466 - LRK54_RS01950 0.66 +0.4 412,466 - LRK54_RS01950 0.66 -1.7 412,466 - LRK54_RS01950 0.66 +0.0 412,466 - LRK54_RS01950 0.66 +1.1 412,466 - LRK54_RS01950 0.66 -0.3 412,466 - LRK54_RS01950 0.66 -1.7 412,466 - LRK54_RS01950 0.66 +2.3 412,466 - LRK54_RS01950 0.66 -0.7 412,466 - LRK54_RS01950 0.66 -1.2 412,488 + LRK54_RS01950 0.68 -0.1 412,574 + LRK54_RS01950 0.74 +0.9 412,574 + LRK54_RS01950 0.74 +1.1 412,575 - LRK54_RS01950 0.74 +1.0 412,689 + LRK54_RS01950 0.82 -0.6 412,689 + LRK54_RS01950 0.82 -0.0 412,689 + LRK54_RS01950 0.82 -0.2 412,689 + LRK54_RS01950 0.82 +1.6 412,689 + LRK54_RS01950 0.82 +0.3 412,690 - LRK54_RS01950 0.82 -0.9 412,690 - LRK54_RS01950 0.82 -1.5 412,690 - LRK54_RS01950 0.82 +1.1 412,690 - LRK54_RS01950 0.82 -0.0 412,690 - LRK54_RS01950 0.82 -1.4 412,690 - LRK54_RS01950 0.82 -0.3 412,690 - LRK54_RS01950 0.82 -0.2 412,690 - LRK54_RS01950 0.82 -0.8 412,690 - LRK54_RS01950 0.82 +0.7 412,690 - LRK54_RS01950 0.82 +0.5 412,690 - LRK54_RS01950 0.82 -0.6 412,707 - LRK54_RS01950 0.83 -1.7 412,707 - LRK54_RS01950 0.83 +0.0 412,707 - LRK54_RS01950 0.83 -0.1 412,813 + +0.8 412,813 + -0.9 412,813 + +1.3 412,813 + +3.3 412,813 + -1.7 412,813 + -0.3 412,813 + -0.0 412,813 + -0.2 412,813 + -0.5 412,814 - +0.9 412,814 - -1.6 412,814 - +0.4 412,814 - +0.1 412,814 - +1.3 412,814 - +0.1 412,814 - +0.4 412,814 - +0.3 412,814 - +1.1 412,814 - -0.7 412,892 + +0.4 412,893 - -1.2 412,916 + +0.3 412,916 + +0.7 412,916 + +1.3 412,916 + -1.0 412,916 + +0.5 412,917 - -0.2 412,983 + -0.3 412,983 + +0.3 412,983 + +1.3 412,984 - +0.5 412,984 - -0.3 413,001 + +0.1 413,001 + -0.1 413,001 + -1.4 413,001 + -0.5 413,001 + +0.6 413,001 + +0.5 413,001 + -1.1 413,002 - -0.7 413,002 - -0.8 413,002 - -0.9 413,002 - -0.3 413,002 - -0.1 413,002 - -2.4 413,002 - -0.4 413,002 - +0.2 413,348 + LRK54_RS01955 0.28 -0.4 413,695 + LRK54_RS01955 0.50 +0.7 413,696 - LRK54_RS01955 0.51 -0.1 413,696 - LRK54_RS01955 0.51 +0.3 413,696 - LRK54_RS01955 0.51 +0.9 413,696 - LRK54_RS01955 0.51 +1.5 413,696 - LRK54_RS01955 0.51 +0.5 413,696 - LRK54_RS01955 0.51 +1.9 414,310 + -0.5 414,310 + +0.8 414,310 + +0.0 414,310 + -0.5 414,310 + +0.1 414,310 + +2.5 414,310 + +0.5 414,310 + -0.1 414,310 + -0.2 414,310 + -1.1 414,310 + -0.9 414,310 + +0.7 414,310 + +1.3 414,311 - -0.3 414,311 - -0.1 414,311 - -0.1 414,311 - -0.9 414,311 - -0.9 414,311 - -1.2 414,311 - -0.6 414,311 - -0.1 414,311 - -0.9 414,311 - +0.2 414,311 - -0.5 414,311 - -0.5 414,384 + +0.7 414,384 + -1.1 414,384 + -0.3 414,397 - +0.3 414,397 - -0.9 414,397 - +1.4 414,397 - -0.8 414,704 + LRK54_RS01960 0.29 -0.3 414,704 + LRK54_RS01960 0.29 +0.1 414,704 + LRK54_RS01960 0.29 -3.5 414,705 - LRK54_RS01960 0.29 -0.8 414,705 - LRK54_RS01960 0.29 +1.0 414,713 + LRK54_RS01960 0.30 -0.9 414,713 + LRK54_RS01960 0.30 -0.6 414,713 + LRK54_RS01960 0.30 +0.0 414,713 + LRK54_RS01960 0.30 -0.5 414,713 + LRK54_RS01960 0.30 +0.3 414,713 + LRK54_RS01960 0.30 +0.7 414,714 - LRK54_RS01960 0.30 -0.2 414,714 - LRK54_RS01960 0.30 -1.0 414,714 - LRK54_RS01960 0.30 +0.9 414,714 - LRK54_RS01960 0.30 -0.7 414,714 - LRK54_RS01960 0.30 +0.7 414,714 - LRK54_RS01960 0.30 -0.4 414,768 - LRK54_RS01960 0.36 -0.2 414,768 - LRK54_RS01960 0.36 +0.6 415,002 + LRK54_RS01960 0.62 -0.2 415,002 + LRK54_RS01960 0.62 -0.3 415,002 + LRK54_RS01960 0.62 -0.4 415,002 + LRK54_RS01960 0.62 -0.4 415,002 + LRK54_RS01960 0.62 -2.1 415,002 + LRK54_RS01960 0.62 -0.7 415,003 - LRK54_RS01960 0.62 -0.0 415,003 - LRK54_RS01960 0.62 +1.3 415,205 + LRK54_RS01960 0.84 +0.3 415,205 + LRK54_RS01960 0.84 +0.3 415,206 - LRK54_RS01960 0.84 -1.1 415,206 - LRK54_RS01960 0.84 +0.5 415,206 - LRK54_RS01960 0.84 -0.4 415,402 + -0.1 415,403 - -0.5 415,411 + -0.3 415,412 - -0.6 415,412 - -0.1 415,412 - +0.3 415,412 - +0.3
Or see this region's nucleotide sequence