Experiment: R2A with FW104 filtrate 0.5 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS01925 and LRK54_RS01930 are separated by 82 nucleotides LRK54_RS01930 and LRK54_RS01935 are separated by 722 nucleotides LRK54_RS01935 and LRK54_RS01940 are separated by 107 nucleotides
LRK54_RS01925: LRK54_RS01925 - TolC family protein, at 405,698 to 406,957
_RS01925
LRK54_RS01930: LRK54_RS01930 - hypothetical protein, at 407,040 to 407,453
_RS01930
LRK54_RS01935: LRK54_RS01935 - DUF2933 domain-containing protein, at 408,176 to 408,328
_RS01935
LRK54_RS01940: LRK54_RS01940 - isoprenylcysteine carboxylmethyltransferase family protein, at 408,436 to 409,098
_RS01940
Position (kb) 407
408 Strain fitness (log2 ratio) -2
-1
0
1
2 at 406.120 kb on - strand, within LRK54_RS01925 at 406.520 kb on + strand, within LRK54_RS01925 at 406.520 kb on + strand, within LRK54_RS01925 at 406.520 kb on + strand, within LRK54_RS01925 at 406.520 kb on + strand, within LRK54_RS01925 at 406.520 kb on + strand, within LRK54_RS01925 at 406.520 kb on + strand, within LRK54_RS01925 at 406.521 kb on - strand, within LRK54_RS01925 at 406.521 kb on - strand, within LRK54_RS01925 at 406.670 kb on - strand, within LRK54_RS01925 at 406.670 kb on - strand, within LRK54_RS01925 at 406.670 kb on - strand, within LRK54_RS01925 at 406.670 kb on - strand, within LRK54_RS01925 at 406.726 kb on - strand, within LRK54_RS01925 at 406.944 kb on + strand at 406.945 kb on - strand at 406.945 kb on - strand at 407.059 kb on + strand at 407.059 kb on + strand at 407.059 kb on + strand at 407.059 kb on + strand at 407.060 kb on - strand at 407.060 kb on - strand at 407.060 kb on - strand at 407.060 kb on - strand at 407.060 kb on - strand at 407.060 kb on - strand at 407.060 kb on - strand at 407.060 kb on - strand at 407.060 kb on - strand at 407.258 kb on + strand, within LRK54_RS01930 at 407.259 kb on - strand, within LRK54_RS01930 at 407.356 kb on + strand, within LRK54_RS01930 at 407.356 kb on + strand, within LRK54_RS01930 at 407.356 kb on + strand, within LRK54_RS01930 at 407.356 kb on + strand, within LRK54_RS01930 at 407.356 kb on + strand, within LRK54_RS01930 at 407.357 kb on - strand, within LRK54_RS01930 at 407.357 kb on - strand, within LRK54_RS01930 at 407.357 kb on - strand, within LRK54_RS01930 at 407.457 kb on + strand at 407.457 kb on + strand at 407.457 kb on + strand at 407.457 kb on + strand at 407.457 kb on + strand at 407.457 kb on + strand at 407.457 kb on + strand at 407.458 kb on - strand at 407.458 kb on - strand at 407.458 kb on - strand at 407.458 kb on - strand at 407.458 kb on - strand at 407.458 kb on - strand at 407.458 kb on - strand at 407.461 kb on + strand at 407.461 kb on + strand at 407.461 kb on + strand at 407.461 kb on + strand at 407.461 kb on + strand at 407.462 kb on - strand at 407.462 kb on - strand at 407.462 kb on - strand at 407.462 kb on - strand at 407.462 kb on - strand at 407.462 kb on - strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.463 kb on + strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.464 kb on - strand at 407.465 kb on + strand at 407.465 kb on + strand at 407.465 kb on + strand at 407.466 kb on - strand at 407.466 kb on - strand at 407.466 kb on - strand at 407.466 kb on - strand at 407.466 kb on - strand at 407.466 kb on - strand at 407.477 kb on + strand at 407.477 kb on + strand at 407.477 kb on + strand at 407.478 kb on - strand at 407.478 kb on - strand at 407.478 kb on - strand at 407.602 kb on + strand at 407.602 kb on + strand at 407.602 kb on + strand at 407.603 kb on - strand at 407.603 kb on - strand at 407.603 kb on - strand at 407.603 kb on - strand at 407.603 kb on - strand at 407.603 kb on - strand at 407.654 kb on + strand at 407.695 kb on + strand at 407.696 kb on - strand at 407.806 kb on + strand at 407.807 kb on - strand at 407.807 kb on - strand at 407.911 kb on + strand at 408.114 kb on + strand at 408.114 kb on + strand at 408.115 kb on - strand at 408.134 kb on + strand at 408.135 kb on - strand at 408.135 kb on - strand at 408.197 kb on + strand, within LRK54_RS01935 at 408.197 kb on + strand, within LRK54_RS01935 at 408.197 kb on + strand, within LRK54_RS01935 at 408.198 kb on - strand, within LRK54_RS01935 at 408.198 kb on - strand, within LRK54_RS01935 at 408.242 kb on + strand, within LRK54_RS01935 at 408.242 kb on + strand, within LRK54_RS01935 at 408.242 kb on + strand, within LRK54_RS01935 at 408.243 kb on - strand, within LRK54_RS01935 at 408.243 kb on - strand, within LRK54_RS01935 at 408.246 kb on + strand, within LRK54_RS01935 at 408.246 kb on + strand, within LRK54_RS01935 at 408.246 kb on + strand, within LRK54_RS01935 at 408.246 kb on + strand, within LRK54_RS01935 at 408.247 kb on - strand, within LRK54_RS01935 at 408.247 kb on - strand, within LRK54_RS01935 at 408.247 kb on - strand, within LRK54_RS01935 at 408.255 kb on + strand, within LRK54_RS01935 at 408.256 kb on - strand, within LRK54_RS01935 at 408.256 kb on - strand, within LRK54_RS01935 at 408.256 kb on - strand, within LRK54_RS01935 at 408.256 kb on - strand, within LRK54_RS01935 at 408.279 kb on + strand, within LRK54_RS01935 at 408.279 kb on + strand, within LRK54_RS01935 at 408.279 kb on + strand, within LRK54_RS01935 at 408.279 kb on + strand, within LRK54_RS01935 at 408.279 kb on + strand, within LRK54_RS01935 at 408.279 kb on + strand, within LRK54_RS01935 at 408.279 kb on + strand, within LRK54_RS01935 at 408.279 kb on + strand, within LRK54_RS01935 at 408.279 kb on + strand, within LRK54_RS01935 at 408.280 kb on - strand, within LRK54_RS01935 at 408.280 kb on - strand, within LRK54_RS01935 at 408.280 kb on - strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.283 kb on + strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935 at 408.284 kb on - strand, within LRK54_RS01935
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X remove 406,120 - LRK54_RS01925 0.33 -1.2 406,520 + LRK54_RS01925 0.65 +0.1 406,520 + LRK54_RS01925 0.65 -1.3 406,520 + LRK54_RS01925 0.65 +1.3 406,520 + LRK54_RS01925 0.65 -0.9 406,520 + LRK54_RS01925 0.65 -1.7 406,520 + LRK54_RS01925 0.65 -0.7 406,521 - LRK54_RS01925 0.65 -0.2 406,521 - LRK54_RS01925 0.65 -1.6 406,670 - LRK54_RS01925 0.77 -1.5 406,670 - LRK54_RS01925 0.77 -0.1 406,670 - LRK54_RS01925 0.77 +0.6 406,670 - LRK54_RS01925 0.77 -0.9 406,726 - LRK54_RS01925 0.82 -1.7 406,944 + -1.3 406,945 - +0.8 406,945 - -1.2 407,059 + -1.1 407,059 + +1.3 407,059 + +0.6 407,059 + -1.5 407,060 - -0.4 407,060 - -1.2 407,060 - -0.8 407,060 - -0.7 407,060 - +0.6 407,060 - +0.7 407,060 - +0.1 407,060 - -0.0 407,060 - +0.3 407,258 + LRK54_RS01930 0.53 +0.3 407,259 - LRK54_RS01930 0.53 -0.7 407,356 + LRK54_RS01930 0.76 +0.1 407,356 + LRK54_RS01930 0.76 -0.6 407,356 + LRK54_RS01930 0.76 -0.5 407,356 + LRK54_RS01930 0.76 +0.5 407,356 + LRK54_RS01930 0.76 +0.8 407,357 - LRK54_RS01930 0.77 +0.6 407,357 - LRK54_RS01930 0.77 +0.2 407,357 - LRK54_RS01930 0.77 +0.8 407,457 + -1.1 407,457 + -0.1 407,457 + -1.2 407,457 + -0.0 407,457 + +0.9 407,457 + +0.6 407,457 + +1.3 407,458 - +0.7 407,458 - -0.0 407,458 - -0.1 407,458 - -0.0 407,458 - -0.7 407,458 - +0.3 407,458 - +0.2 407,461 + -0.4 407,461 + -2.0 407,461 + -0.5 407,461 + -0.5 407,461 + -1.4 407,462 - +0.4 407,462 - -1.6 407,462 - -1.0 407,462 - -2.0 407,462 - -1.9 407,462 - -0.2 407,463 + -0.6 407,463 + +0.7 407,463 + -0.2 407,463 + -0.2 407,463 + -1.3 407,463 + -0.7 407,463 + -0.3 407,463 + +0.0 407,463 + -0.0 407,463 + -1.2 407,463 + +0.1 407,463 + +0.7 407,463 + -0.4 407,463 + -1.7 407,463 + -0.6 407,463 + +1.3 407,463 + +0.2 407,463 + -1.3 407,464 - +0.6 407,464 - +0.2 407,464 - -0.3 407,464 - -0.4 407,464 - +1.4 407,464 - -0.3 407,464 - -0.7 407,464 - -0.9 407,464 - -0.1 407,464 - -1.6 407,464 - +1.5 407,464 - +0.7 407,464 - -0.7 407,464 - +0.5 407,464 - +0.8 407,464 - -1.6 407,464 - -0.6 407,465 + -0.0 407,465 + -0.4 407,465 + -0.6 407,466 - +0.0 407,466 - -1.4 407,466 - +0.3 407,466 - +0.1 407,466 - -1.2 407,466 - -0.6 407,477 + +0.5 407,477 + +0.1 407,477 + -1.0 407,478 - +0.5 407,478 - +0.6 407,478 - -0.9 407,602 + -1.0 407,602 + -0.0 407,602 + -0.5 407,603 - +0.9 407,603 - +0.4 407,603 - -0.8 407,603 - -0.6 407,603 - -1.3 407,603 - +0.6 407,654 + -0.8 407,695 + -1.5 407,696 - -0.3 407,806 + -0.5 407,807 - -0.7 407,807 - +0.4 407,911 + +0.2 408,114 + -1.4 408,114 + -1.2 408,115 - +0.3 408,134 + -0.6 408,135 - -0.9 408,135 - +0.1 408,197 + LRK54_RS01935 0.14 -1.8 408,197 + LRK54_RS01935 0.14 -0.7 408,197 + LRK54_RS01935 0.14 -1.9 408,198 - LRK54_RS01935 0.14 -1.0 408,198 - LRK54_RS01935 0.14 +0.2 408,242 + LRK54_RS01935 0.43 +0.4 408,242 + LRK54_RS01935 0.43 +0.5 408,242 + LRK54_RS01935 0.43 +0.3 408,243 - LRK54_RS01935 0.44 -0.9 408,243 - LRK54_RS01935 0.44 -0.4 408,246 + LRK54_RS01935 0.46 -0.3 408,246 + LRK54_RS01935 0.46 +0.7 408,246 + LRK54_RS01935 0.46 -0.8 408,246 + LRK54_RS01935 0.46 -1.5 408,247 - LRK54_RS01935 0.46 -0.2 408,247 - LRK54_RS01935 0.46 -0.8 408,247 - LRK54_RS01935 0.46 +0.7 408,255 + LRK54_RS01935 0.52 +0.5 408,256 - LRK54_RS01935 0.52 -0.3 408,256 - LRK54_RS01935 0.52 +0.7 408,256 - LRK54_RS01935 0.52 -1.0 408,256 - LRK54_RS01935 0.52 -0.8 408,279 + LRK54_RS01935 0.67 -1.2 408,279 + LRK54_RS01935 0.67 -1.2 408,279 + LRK54_RS01935 0.67 -0.5 408,279 + LRK54_RS01935 0.67 +0.1 408,279 + LRK54_RS01935 0.67 -1.2 408,279 + LRK54_RS01935 0.67 +0.7 408,279 + LRK54_RS01935 0.67 +0.2 408,279 + LRK54_RS01935 0.67 -0.2 408,279 + LRK54_RS01935 0.67 -0.0 408,280 - LRK54_RS01935 0.68 +0.2 408,280 - LRK54_RS01935 0.68 +1.9 408,280 - LRK54_RS01935 0.68 +0.0 408,283 + LRK54_RS01935 0.70 -1.9 408,283 + LRK54_RS01935 0.70 +1.3 408,283 + LRK54_RS01935 0.70 -1.0 408,283 + LRK54_RS01935 0.70 +0.6 408,283 + LRK54_RS01935 0.70 -0.1 408,283 + LRK54_RS01935 0.70 -0.0 408,283 + LRK54_RS01935 0.70 -1.7 408,283 + LRK54_RS01935 0.70 +0.0 408,283 + LRK54_RS01935 0.70 -0.6 408,283 + LRK54_RS01935 0.70 +0.6 408,283 + LRK54_RS01935 0.70 +0.6 408,283 + LRK54_RS01935 0.70 -0.7 408,283 + LRK54_RS01935 0.70 -0.4 408,283 + LRK54_RS01935 0.70 +0.1 408,283 + LRK54_RS01935 0.70 -1.1 408,283 + LRK54_RS01935 0.70 -0.0 408,283 + LRK54_RS01935 0.70 -1.0 408,283 + LRK54_RS01935 0.70 +0.3 408,283 + LRK54_RS01935 0.70 -0.4 408,284 - LRK54_RS01935 0.71 -0.8 408,284 - LRK54_RS01935 0.71 -0.0 408,284 - LRK54_RS01935 0.71 -0.6 408,284 - LRK54_RS01935 0.71 -1.6 408,284 - LRK54_RS01935 0.71 -0.3 408,284 - LRK54_RS01935 0.71 -0.1 408,284 - LRK54_RS01935 0.71 +0.0 408,284 - LRK54_RS01935 0.71 +0.4 408,284 - LRK54_RS01935 0.71 -0.4 408,284 - LRK54_RS01935 0.71 -0.3 408,284 - LRK54_RS01935 0.71 -0.9 408,284 - LRK54_RS01935 0.71 -0.4
Or see this region's nucleotide sequence