Experiment: R2A with FW104 filtrate 0.5 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS01900 and LRK54_RS01905 are separated by 33 nucleotides LRK54_RS01905 and LRK54_RS01910 are separated by 61 nucleotides LRK54_RS01910 and LRK54_RS01915 are separated by 6 nucleotides
LRK54_RS01900: LRK54_RS01900 - DMT family transporter, at 399,339 to 400,268
_RS01900
LRK54_RS01905: LRK54_RS01905 - class I SAM-dependent methyltransferase, at 400,302 to 400,946
_RS01905
LRK54_RS01910: LRK54_RS01910 - hypothetical protein, at 401,008 to 401,223
_RS01910
LRK54_RS01915: LRK54_RS01915 - CusA/CzcA family heavy metal efflux RND transporter, at 401,230 to 404,403
_RS01915
Position (kb) 401
402 Strain fitness (log2 ratio) -1
0
1
2
3 at 400.087 kb on - strand, within LRK54_RS01900 at 400.146 kb on + strand, within LRK54_RS01900 at 400.146 kb on + strand, within LRK54_RS01900 at 400.147 kb on - strand, within LRK54_RS01900 at 400.147 kb on - strand, within LRK54_RS01900 at 400.147 kb on - strand, within LRK54_RS01900 at 400.147 kb on - strand, within LRK54_RS01900 at 400.336 kb on - strand at 400.336 kb on - strand at 400.336 kb on - strand at 400.368 kb on + strand, within LRK54_RS01905 at 400.385 kb on + strand, within LRK54_RS01905 at 400.385 kb on + strand, within LRK54_RS01905 at 400.385 kb on + strand, within LRK54_RS01905 at 400.386 kb on - strand, within LRK54_RS01905 at 400.444 kb on + strand, within LRK54_RS01905 at 400.444 kb on + strand, within LRK54_RS01905 at 400.444 kb on + strand, within LRK54_RS01905 at 400.444 kb on + strand, within LRK54_RS01905 at 400.445 kb on - strand, within LRK54_RS01905 at 400.624 kb on - strand, within LRK54_RS01905 at 400.686 kb on + strand, within LRK54_RS01905 at 400.686 kb on + strand, within LRK54_RS01905 at 400.686 kb on + strand, within LRK54_RS01905 at 400.687 kb on - strand, within LRK54_RS01905 at 400.687 kb on - strand, within LRK54_RS01905 at 400.687 kb on - strand, within LRK54_RS01905 at 400.732 kb on + strand, within LRK54_RS01905 at 400.782 kb on - strand, within LRK54_RS01905 at 400.782 kb on - strand, within LRK54_RS01905 at 400.782 kb on - strand, within LRK54_RS01905 at 400.791 kb on + strand, within LRK54_RS01905 at 400.791 kb on + strand, within LRK54_RS01905 at 400.791 kb on + strand, within LRK54_RS01905 at 400.792 kb on - strand, within LRK54_RS01905 at 400.896 kb on + strand at 400.896 kb on + strand at 400.896 kb on + strand at 400.897 kb on - strand at 400.897 kb on - strand at 400.897 kb on - strand at 401.126 kb on + strand, within LRK54_RS01910 at 401.126 kb on + strand, within LRK54_RS01910 at 401.126 kb on + strand, within LRK54_RS01910 at 401.126 kb on + strand, within LRK54_RS01910 at 401.127 kb on - strand, within LRK54_RS01910 at 401.127 kb on - strand, within LRK54_RS01910 at 401.127 kb on - strand, within LRK54_RS01910 at 401.127 kb on - strand, within LRK54_RS01910 at 401.127 kb on - strand, within LRK54_RS01910 at 401.127 kb on - strand, within LRK54_RS01910 at 401.236 kb on + strand at 401.236 kb on + strand at 401.237 kb on - strand at 401.564 kb on + strand, within LRK54_RS01915 at 401.564 kb on + strand, within LRK54_RS01915 at 401.564 kb on + strand, within LRK54_RS01915 at 401.564 kb on + strand, within LRK54_RS01915 at 401.564 kb on + strand, within LRK54_RS01915 at 401.564 kb on + strand, within LRK54_RS01915 at 401.564 kb on + strand, within LRK54_RS01915 at 401.565 kb on - strand, within LRK54_RS01915 at 401.565 kb on - strand, within LRK54_RS01915 at 401.565 kb on - strand, within LRK54_RS01915 at 401.565 kb on - strand, within LRK54_RS01915 at 401.565 kb on - strand, within LRK54_RS01915 at 401.565 kb on - strand, within LRK54_RS01915 at 401.565 kb on - strand, within LRK54_RS01915 at 401.565 kb on - strand, within LRK54_RS01915 at 401.565 kb on - strand, within LRK54_RS01915 at 401.741 kb on + strand, within LRK54_RS01915 at 401.741 kb on + strand, within LRK54_RS01915 at 401.741 kb on + strand, within LRK54_RS01915 at 401.741 kb on + strand, within LRK54_RS01915 at 401.741 kb on + strand, within LRK54_RS01915 at 401.741 kb on + strand, within LRK54_RS01915 at 401.741 kb on + strand, within LRK54_RS01915 at 401.741 kb on + strand, within LRK54_RS01915 at 401.741 kb on + strand, within LRK54_RS01915 at 401.741 kb on + strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.742 kb on - strand, within LRK54_RS01915 at 401.814 kb on - strand, within LRK54_RS01915 at 401.930 kb on + strand, within LRK54_RS01915 at 401.930 kb on + strand, within LRK54_RS01915 at 401.930 kb on + strand, within LRK54_RS01915 at 401.930 kb on + strand, within LRK54_RS01915 at 401.930 kb on + strand, within LRK54_RS01915 at 401.930 kb on + strand, within LRK54_RS01915 at 401.930 kb on + strand, within LRK54_RS01915 at 401.930 kb on + strand, within LRK54_RS01915 at 401.930 kb on + strand, within LRK54_RS01915 at 401.930 kb on + strand, within LRK54_RS01915 at 401.931 kb on - strand, within LRK54_RS01915 at 401.931 kb on - strand, within LRK54_RS01915 at 401.931 kb on - strand, within LRK54_RS01915 at 401.931 kb on - strand, within LRK54_RS01915 at 401.936 kb on + strand, within LRK54_RS01915 at 401.936 kb on + strand, within LRK54_RS01915 at 401.936 kb on + strand, within LRK54_RS01915 at 401.936 kb on + strand, within LRK54_RS01915 at 401.936 kb on + strand, within LRK54_RS01915 at 401.936 kb on + strand, within LRK54_RS01915 at 401.936 kb on + strand, within LRK54_RS01915 at 401.936 kb on + strand, within LRK54_RS01915 at 401.936 kb on + strand, within LRK54_RS01915 at 401.936 kb on + strand, within LRK54_RS01915 at 401.936 kb on + strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.937 kb on - strand, within LRK54_RS01915 at 401.987 kb on - strand, within LRK54_RS01915 at 402.154 kb on + strand, within LRK54_RS01915 at 402.154 kb on + strand, within LRK54_RS01915 at 402.155 kb on - strand, within LRK54_RS01915 at 402.155 kb on - strand, within LRK54_RS01915 at 402.155 kb on - strand, within LRK54_RS01915 at 402.197 kb on + strand, within LRK54_RS01915
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X remove 400,087 - LRK54_RS01900 0.80 +0.3 400,146 + LRK54_RS01900 0.87 -0.3 400,146 + LRK54_RS01900 0.87 +0.7 400,147 - LRK54_RS01900 0.87 -0.8 400,147 - LRK54_RS01900 0.87 -0.1 400,147 - LRK54_RS01900 0.87 -0.2 400,147 - LRK54_RS01900 0.87 -0.8 400,336 - +1.3 400,336 - +0.4 400,336 - -0.6 400,368 + LRK54_RS01905 0.10 +0.7 400,385 + LRK54_RS01905 0.13 +0.5 400,385 + LRK54_RS01905 0.13 +0.3 400,385 + LRK54_RS01905 0.13 +0.3 400,386 - LRK54_RS01905 0.13 -0.4 400,444 + LRK54_RS01905 0.22 +0.5 400,444 + LRK54_RS01905 0.22 -0.6 400,444 + LRK54_RS01905 0.22 +1.2 400,444 + LRK54_RS01905 0.22 -0.3 400,445 - LRK54_RS01905 0.22 +0.6 400,624 - LRK54_RS01905 0.50 -0.1 400,686 + LRK54_RS01905 0.60 -0.9 400,686 + LRK54_RS01905 0.60 -1.5 400,686 + LRK54_RS01905 0.60 +0.1 400,687 - LRK54_RS01905 0.60 +0.5 400,687 - LRK54_RS01905 0.60 -0.7 400,687 - LRK54_RS01905 0.60 -0.3 400,732 + LRK54_RS01905 0.67 +3.1 400,782 - LRK54_RS01905 0.74 -0.3 400,782 - LRK54_RS01905 0.74 -0.8 400,782 - LRK54_RS01905 0.74 -0.3 400,791 + LRK54_RS01905 0.76 -0.0 400,791 + LRK54_RS01905 0.76 -0.3 400,791 + LRK54_RS01905 0.76 +0.6 400,792 - LRK54_RS01905 0.76 +0.5 400,896 + -0.0 400,896 + -0.3 400,896 + +0.4 400,897 - -0.8 400,897 - -1.3 400,897 - +0.6 401,126 + LRK54_RS01910 0.55 -0.3 401,126 + LRK54_RS01910 0.55 +0.6 401,126 + LRK54_RS01910 0.55 +1.2 401,126 + LRK54_RS01910 0.55 -0.5 401,127 - LRK54_RS01910 0.55 +0.6 401,127 - LRK54_RS01910 0.55 +0.6 401,127 - LRK54_RS01910 0.55 +0.7 401,127 - LRK54_RS01910 0.55 +0.4 401,127 - LRK54_RS01910 0.55 +0.7 401,127 - LRK54_RS01910 0.55 -1.2 401,236 + +0.7 401,236 + -0.2 401,237 - -0.3 401,564 + LRK54_RS01915 0.11 +0.1 401,564 + LRK54_RS01915 0.11 +1.0 401,564 + LRK54_RS01915 0.11 +1.3 401,564 + LRK54_RS01915 0.11 +1.3 401,564 + LRK54_RS01915 0.11 +0.1 401,564 + LRK54_RS01915 0.11 -0.3 401,564 + LRK54_RS01915 0.11 -0.4 401,565 - LRK54_RS01915 0.11 -0.7 401,565 - LRK54_RS01915 0.11 -0.0 401,565 - LRK54_RS01915 0.11 +0.7 401,565 - LRK54_RS01915 0.11 +0.1 401,565 - LRK54_RS01915 0.11 -1.4 401,565 - LRK54_RS01915 0.11 +1.5 401,565 - LRK54_RS01915 0.11 -0.4 401,565 - LRK54_RS01915 0.11 +0.3 401,565 - LRK54_RS01915 0.11 +0.4 401,741 + LRK54_RS01915 0.16 -0.8 401,741 + LRK54_RS01915 0.16 +0.6 401,741 + LRK54_RS01915 0.16 -0.5 401,741 + LRK54_RS01915 0.16 -0.2 401,741 + LRK54_RS01915 0.16 -0.7 401,741 + LRK54_RS01915 0.16 -0.4 401,741 + LRK54_RS01915 0.16 +0.4 401,741 + LRK54_RS01915 0.16 -0.6 401,741 + LRK54_RS01915 0.16 -0.2 401,741 + LRK54_RS01915 0.16 -0.2 401,742 - LRK54_RS01915 0.16 -0.2 401,742 - LRK54_RS01915 0.16 +0.3 401,742 - LRK54_RS01915 0.16 +0.7 401,742 - LRK54_RS01915 0.16 -0.2 401,742 - LRK54_RS01915 0.16 +0.2 401,742 - LRK54_RS01915 0.16 -0.1 401,742 - LRK54_RS01915 0.16 +0.4 401,742 - LRK54_RS01915 0.16 -0.4 401,742 - LRK54_RS01915 0.16 -0.1 401,742 - LRK54_RS01915 0.16 +0.1 401,742 - LRK54_RS01915 0.16 -0.1 401,742 - LRK54_RS01915 0.16 +1.3 401,742 - LRK54_RS01915 0.16 +0.7 401,814 - LRK54_RS01915 0.18 -0.4 401,930 + LRK54_RS01915 0.22 +0.1 401,930 + LRK54_RS01915 0.22 +0.1 401,930 + LRK54_RS01915 0.22 +0.6 401,930 + LRK54_RS01915 0.22 -0.3 401,930 + LRK54_RS01915 0.22 +0.3 401,930 + LRK54_RS01915 0.22 +0.9 401,930 + LRK54_RS01915 0.22 +2.3 401,930 + LRK54_RS01915 0.22 +1.3 401,930 + LRK54_RS01915 0.22 -0.7 401,930 + LRK54_RS01915 0.22 -0.0 401,931 - LRK54_RS01915 0.22 -0.2 401,931 - LRK54_RS01915 0.22 +1.3 401,931 - LRK54_RS01915 0.22 +0.8 401,931 - LRK54_RS01915 0.22 +0.4 401,936 + LRK54_RS01915 0.22 +0.7 401,936 + LRK54_RS01915 0.22 -0.4 401,936 + LRK54_RS01915 0.22 -0.1 401,936 + LRK54_RS01915 0.22 -0.4 401,936 + LRK54_RS01915 0.22 -0.2 401,936 + LRK54_RS01915 0.22 -0.5 401,936 + LRK54_RS01915 0.22 -1.6 401,936 + LRK54_RS01915 0.22 -0.4 401,936 + LRK54_RS01915 0.22 +0.1 401,936 + LRK54_RS01915 0.22 -0.5 401,936 + LRK54_RS01915 0.22 +0.4 401,937 - LRK54_RS01915 0.22 -1.0 401,937 - LRK54_RS01915 0.22 +0.3 401,937 - LRK54_RS01915 0.22 +0.8 401,937 - LRK54_RS01915 0.22 -0.5 401,937 - LRK54_RS01915 0.22 -0.2 401,937 - LRK54_RS01915 0.22 -0.2 401,937 - LRK54_RS01915 0.22 -0.1 401,937 - LRK54_RS01915 0.22 +0.4 401,937 - LRK54_RS01915 0.22 -0.7 401,937 - LRK54_RS01915 0.22 -0.1 401,937 - LRK54_RS01915 0.22 +0.1 401,937 - LRK54_RS01915 0.22 -0.3 401,987 - LRK54_RS01915 0.24 +0.6 402,154 + LRK54_RS01915 0.29 -1.3 402,154 + LRK54_RS01915 0.29 -1.0 402,155 - LRK54_RS01915 0.29 -0.3 402,155 - LRK54_RS01915 0.29 -1.6 402,155 - LRK54_RS01915 0.29 -0.4 402,197 + LRK54_RS01915 0.30 +2.0
Or see this region's nucleotide sequence