Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS00615

Experiment: R2A with FW104 filtrate 0.5 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS00605 and LRK54_RS00610 are separated by 48 nucleotidesLRK54_RS00610 and LRK54_RS00615 are separated by 10 nucleotidesLRK54_RS00615 and LRK54_RS00620 overlap by 4 nucleotides LRK54_RS00605: LRK54_RS00605 - adenylosuccinate synthase, at 124,964 to 126,256 _RS00605 LRK54_RS00610: LRK54_RS00610 - DUF2065 domain-containing protein, at 126,305 to 126,487 _RS00610 LRK54_RS00615: LRK54_RS00615 - protease modulator HflC, at 126,498 to 127,367 _RS00615 LRK54_RS00620: LRK54_RS00620 - FtsH protease activity modulator HflK, at 127,364 to 128,431 _RS00620 Position (kb) 126 127 128Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 126.257 kb on - strandat 126.304 kb on - strandat 126.304 kb on - strandat 126.304 kb on - strandat 126.304 kb on - strandat 126.304 kb on - strandat 126.304 kb on - strandat 126.526 kb on + strandat 126.526 kb on + strandat 126.526 kb on + strandat 126.527 kb on - strandat 126.527 kb on - strandat 126.527 kb on - strandat 126.593 kb on - strand, within LRK54_RS00615at 126.610 kb on + strand, within LRK54_RS00615at 126.611 kb on - strand, within LRK54_RS00615at 126.640 kb on + strand, within LRK54_RS00615at 126.640 kb on + strand, within LRK54_RS00615at 126.640 kb on + strand, within LRK54_RS00615at 126.640 kb on + strandat 126.641 kb on - strand, within LRK54_RS00615at 126.641 kb on - strand, within LRK54_RS00615at 126.641 kb on - strand, within LRK54_RS00615at 126.641 kb on - strand, within LRK54_RS00615at 126.641 kb on - strand, within LRK54_RS00615at 126.641 kb on - strand, within LRK54_RS00615at 126.652 kb on + strand, within LRK54_RS00615at 126.652 kb on + strand, within LRK54_RS00615at 126.653 kb on - strand, within LRK54_RS00615at 126.653 kb on - strand, within LRK54_RS00615at 126.653 kb on - strand, within LRK54_RS00615at 126.653 kb on - strand, within LRK54_RS00615at 126.653 kb on - strand, within LRK54_RS00615at 126.653 kb on - strand, within LRK54_RS00615at 126.653 kb on - strand, within LRK54_RS00615at 126.653 kb on - strand, within LRK54_RS00615at 126.653 kb on - strand, within LRK54_RS00615at 126.829 kb on + strand, within LRK54_RS00615at 126.829 kb on + strand, within LRK54_RS00615at 126.829 kb on + strand, within LRK54_RS00615at 126.829 kb on + strand, within LRK54_RS00615at 126.829 kb on + strand, within LRK54_RS00615at 126.829 kb on + strand, within LRK54_RS00615at 126.829 kb on + strand, within LRK54_RS00615at 126.829 kb on + strand, within LRK54_RS00615at 126.830 kb on - strand, within LRK54_RS00615at 126.830 kb on - strand, within LRK54_RS00615at 126.830 kb on - strand, within LRK54_RS00615at 126.830 kb on - strand, within LRK54_RS00615at 126.830 kb on - strand, within LRK54_RS00615at 126.830 kb on - strand, within LRK54_RS00615at 126.830 kb on - strand, within LRK54_RS00615at 126.830 kb on - strand, within LRK54_RS00615at 127.072 kb on + strand, within LRK54_RS00615at 127.073 kb on - strand, within LRK54_RS00615at 127.073 kb on - strand, within LRK54_RS00615at 127.073 kb on - strand, within LRK54_RS00615at 127.075 kb on + strand, within LRK54_RS00615at 127.076 kb on - strand, within LRK54_RS00615at 127.076 kb on - strand, within LRK54_RS00615at 127.076 kb on - strand, within LRK54_RS00615at 127.076 kb on - strand, within LRK54_RS00615at 127.108 kb on + strand, within LRK54_RS00615at 127.108 kb on + strand, within LRK54_RS00615at 127.108 kb on + strand, within LRK54_RS00615at 127.108 kb on + strand, within LRK54_RS00615at 127.108 kb on + strand, within LRK54_RS00615at 127.109 kb on - strand, within LRK54_RS00615at 127.109 kb on - strand, within LRK54_RS00615at 127.109 kb on - strand, within LRK54_RS00615at 127.109 kb on - strand, within LRK54_RS00615at 127.109 kb on - strand, within LRK54_RS00615at 127.109 kb on - strand, within LRK54_RS00615at 127.109 kb on - strand, within LRK54_RS00615at 127.109 kb on - strand, within LRK54_RS00615at 127.109 kb on - strand, within LRK54_RS00615at 127.109 kb on - strand, within LRK54_RS00615at 127.109 kb on - strand, within LRK54_RS00615at 127.109 kb on - strand, within LRK54_RS00615at 127.109 kb on - strand, within LRK54_RS00615at 127.147 kb on + strand, within LRK54_RS00615at 127.148 kb on - strand, within LRK54_RS00615at 127.148 kb on - strand, within LRK54_RS00615at 127.148 kb on - strand, within LRK54_RS00615at 127.148 kb on - strand, within LRK54_RS00615at 127.148 kb on - strand, within LRK54_RS00615at 127.248 kb on - strand, within LRK54_RS00615at 127.283 kb on + strandat 127.284 kb on - strandat 127.284 kb on - strandat 127.584 kb on + strand, within LRK54_RS00620at 127.584 kb on + strand, within LRK54_RS00620at 127.585 kb on - strand, within LRK54_RS00620at 127.585 kb on - strand, within LRK54_RS00620at 127.585 kb on - strand, within LRK54_RS00620at 127.585 kb on - strand, within LRK54_RS00620at 127.585 kb on - strand, within LRK54_RS00620at 127.585 kb on - strand, within LRK54_RS00620at 127.585 kb on - strand, within LRK54_RS00620at 127.585 kb on - strand, within LRK54_RS00620at 127.585 kb on - strand, within LRK54_RS00620at 127.585 kb on - strand, within LRK54_RS00620at 127.585 kb on - strand, within LRK54_RS00620at 127.585 kb on - strand, within LRK54_RS00620at 127.585 kb on - strand, within LRK54_RS00620at 127.585 kb on - strand, within LRK54_RS00620at 127.585 kb on - strand, within LRK54_RS00620at 127.585 kb on - strand, within LRK54_RS00620at 127.585 kb on - strand, within LRK54_RS00620at 127.585 kb on - strand, within LRK54_RS00620at 127.585 kb on - strand, within LRK54_RS00620at 127.650 kb on + strand, within LRK54_RS00620at 127.651 kb on - strand, within LRK54_RS00620at 127.651 kb on - strand, within LRK54_RS00620at 127.651 kb on - strand, within LRK54_RS00620at 127.716 kb on + strand, within LRK54_RS00620at 127.717 kb on - strand, within LRK54_RS00620at 127.717 kb on - strand, within LRK54_RS00620at 127.717 kb on - strand, within LRK54_RS00620at 127.717 kb on - strand, within LRK54_RS00620at 127.717 kb on - strand, within LRK54_RS00620at 127.848 kb on + strand, within LRK54_RS00620at 127.848 kb on + strand, within LRK54_RS00620at 127.848 kb on + strand, within LRK54_RS00620at 127.849 kb on - strand, within LRK54_RS00620at 127.849 kb on - strand, within LRK54_RS00620at 127.849 kb on - strand, within LRK54_RS00620at 127.849 kb on - strand, within LRK54_RS00620at 127.849 kb on - strand, within LRK54_RS00620at 127.849 kb on - strand, within LRK54_RS00620at 127.849 kb on - strand, within LRK54_RS00620at 127.849 kb on - strand, within LRK54_RS00620at 127.849 kb on - strand, within LRK54_RS00620at 127.849 kb on - strand, within LRK54_RS00620at 127.849 kb on - strand, within LRK54_RS00620at 127.849 kb on - strand, within LRK54_RS00620at 127.849 kb on - strand, within LRK54_RS00620at 127.852 kb on + strand, within LRK54_RS00620at 127.853 kb on - strand, within LRK54_RS00620at 127.853 kb on - strand, within LRK54_RS00620at 127.853 kb on - strand, within LRK54_RS00620at 127.853 kb on - strand, within LRK54_RS00620at 127.853 kb on - strand, within LRK54_RS00620at 127.853 kb on - strand, within LRK54_RS00620at 128.010 kb on + strand, within LRK54_RS00620at 128.010 kb on + strand, within LRK54_RS00620at 128.011 kb on - strand, within LRK54_RS00620at 128.011 kb on - strand, within LRK54_RS00620at 128.011 kb on - strand, within LRK54_RS00620at 128.011 kb on - strand, within LRK54_RS00620at 128.011 kb on - strand, within LRK54_RS00620at 128.011 kb on - strand, within LRK54_RS00620at 128.011 kb on - strandat 128.011 kb on - strand, within LRK54_RS00620at 128.011 kb on - strand, within LRK54_RS00620at 128.011 kb on - strand, within LRK54_RS00620at 128.011 kb on - strand, within LRK54_RS00620at 128.011 kb on - strand, within LRK54_RS00620at 128.011 kb on - strand, within LRK54_RS00620at 128.011 kb on - strand, within LRK54_RS00620at 128.011 kb on - strand, within LRK54_RS00620at 128.011 kb on - strand, within LRK54_RS00620at 128.034 kb on + strand, within LRK54_RS00620at 128.035 kb on - strand, within LRK54_RS00620at 128.035 kb on - strand, within LRK54_RS00620at 128.035 kb on - strand, within LRK54_RS00620at 128.035 kb on - strand, within LRK54_RS00620at 128.035 kb on - strand, within LRK54_RS00620at 128.035 kb on - strand, within LRK54_RS00620at 128.035 kb on - strand, within LRK54_RS00620at 128.035 kb on - strand, within LRK54_RS00620at 128.035 kb on - strand, within LRK54_RS00620at 128.035 kb on - strand, within LRK54_RS00620at 128.035 kb on - strand, within LRK54_RS00620at 128.210 kb on + strand, within LRK54_RS00620at 128.210 kb on + strand, within LRK54_RS00620at 128.211 kb on - strandat 128.211 kb on - strand, within LRK54_RS00620at 128.211 kb on - strand, within LRK54_RS00620at 128.211 kb on - strand, within LRK54_RS00620at 128.241 kb on + strand, within LRK54_RS00620at 128.241 kb on + strand, within LRK54_RS00620at 128.241 kb on + strand, within LRK54_RS00620at 128.241 kb on + strand, within LRK54_RS00620at 128.241 kb on + strand, within LRK54_RS00620at 128.241 kb on + strand, within LRK54_RS00620at 128.242 kb on - strand, within LRK54_RS00620at 128.242 kb on - strand, within LRK54_RS00620at 128.242 kb on - strand, within LRK54_RS00620at 128.242 kb on - strand, within LRK54_RS00620at 128.242 kb on - strand, within LRK54_RS00620at 128.242 kb on - strand, within LRK54_RS00620at 128.242 kb on - strand, within LRK54_RS00620at 128.242 kb on - strand, within LRK54_RS00620at 128.242 kb on - strand, within LRK54_RS00620at 128.242 kb on - strand, within LRK54_RS00620at 128.242 kb on - strand, within LRK54_RS00620at 128.242 kb on - strand, within LRK54_RS00620at 128.242 kb on - strand, within LRK54_RS00620at 128.242 kb on - strand, within LRK54_RS00620at 128.242 kb on - strand, within LRK54_RS00620at 128.242 kb on - strand, within LRK54_RS00620at 128.242 kb on - strand, within LRK54_RS00620at 128.242 kb on - strand, within LRK54_RS00620at 128.242 kb on - strand, within LRK54_RS00620

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X
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126,257 - +0.3
126,304 - -0.2
126,304 - -0.6
126,304 - -1.6
126,304 - +0.9
126,304 - +0.5
126,304 - +1.5
126,526 + +0.7
126,526 + +1.3
126,526 + -2.5
126,527 - +2.3
126,527 - -0.7
126,527 - +2.6
126,593 - LRK54_RS00615 0.11 -0.5
126,610 + LRK54_RS00615 0.13 -1.0
126,611 - LRK54_RS00615 0.13 +0.0
126,640 + LRK54_RS00615 0.16 -1.5
126,640 + LRK54_RS00615 0.16 +0.0
126,640 + LRK54_RS00615 0.16 -0.7
126,640 + -0.3
126,641 - LRK54_RS00615 0.16 -1.4
126,641 - LRK54_RS00615 0.16 -1.7
126,641 - LRK54_RS00615 0.16 -2.7
126,641 - LRK54_RS00615 0.16 -0.7
126,641 - LRK54_RS00615 0.16 -1.3
126,641 - LRK54_RS00615 0.16 +0.9
126,652 + LRK54_RS00615 0.18 -1.0
126,652 + LRK54_RS00615 0.18 -1.3
126,653 - LRK54_RS00615 0.18 -2.1
126,653 - LRK54_RS00615 0.18 +0.0
126,653 - LRK54_RS00615 0.18 +0.3
126,653 - LRK54_RS00615 0.18 +0.7
126,653 - LRK54_RS00615 0.18 -0.3
126,653 - LRK54_RS00615 0.18 -1.5
126,653 - LRK54_RS00615 0.18 -0.5
126,653 - LRK54_RS00615 0.18 -0.5
126,653 - LRK54_RS00615 0.18 -0.7
126,829 + LRK54_RS00615 0.38 -2.1
126,829 + LRK54_RS00615 0.38 +0.0
126,829 + LRK54_RS00615 0.38 -1.0
126,829 + LRK54_RS00615 0.38 -1.3
126,829 + LRK54_RS00615 0.38 -0.8
126,829 + LRK54_RS00615 0.38 +0.3
126,829 + LRK54_RS00615 0.38 -2.4
126,829 + LRK54_RS00615 0.38 -1.0
126,830 - LRK54_RS00615 0.38 -0.8
126,830 - LRK54_RS00615 0.38 -0.5
126,830 - LRK54_RS00615 0.38 -0.7
126,830 - LRK54_RS00615 0.38 +0.7
126,830 - LRK54_RS00615 0.38 -1.8
126,830 - LRK54_RS00615 0.38 -0.4
126,830 - LRK54_RS00615 0.38 -2.6
126,830 - LRK54_RS00615 0.38 -0.5
127,072 + LRK54_RS00615 0.66 -0.3
127,073 - LRK54_RS00615 0.66 -1.3
127,073 - LRK54_RS00615 0.66 -2.6
127,073 - LRK54_RS00615 0.66 -2.5
127,075 + LRK54_RS00615 0.66 +0.0
127,076 - LRK54_RS00615 0.66 -1.1
127,076 - LRK54_RS00615 0.66 -0.5
127,076 - LRK54_RS00615 0.66 -1.6
127,076 - LRK54_RS00615 0.66 -3.2
127,108 + LRK54_RS00615 0.70 -0.7
127,108 + LRK54_RS00615 0.70 -0.7
127,108 + LRK54_RS00615 0.70 -0.3
127,108 + LRK54_RS00615 0.70 -0.3
127,108 + LRK54_RS00615 0.70 +0.0
127,109 - LRK54_RS00615 0.70 -0.8
127,109 - LRK54_RS00615 0.70 +0.7
127,109 - LRK54_RS00615 0.70 +0.7
127,109 - LRK54_RS00615 0.70 -1.3
127,109 - LRK54_RS00615 0.70 -2.1
127,109 - LRK54_RS00615 0.70 -1.5
127,109 - LRK54_RS00615 0.70 -0.8
127,109 - LRK54_RS00615 0.70 -0.8
127,109 - LRK54_RS00615 0.70 -1.1
127,109 - LRK54_RS00615 0.70 +0.0
127,109 - LRK54_RS00615 0.70 +0.7
127,109 - LRK54_RS00615 0.70 -1.1
127,109 - LRK54_RS00615 0.70 -1.4
127,147 + LRK54_RS00615 0.75 +0.3
127,148 - LRK54_RS00615 0.75 -0.3
127,148 - LRK54_RS00615 0.75 -0.8
127,148 - LRK54_RS00615 0.75 +1.3
127,148 - LRK54_RS00615 0.75 -1.1
127,148 - LRK54_RS00615 0.75 +0.3
127,248 - LRK54_RS00615 0.86 -0.5
127,283 + +1.3
127,284 - -1.7
127,284 - -3.1
127,584 + LRK54_RS00620 0.21 -0.7
127,584 + LRK54_RS00620 0.21 -0.3
127,585 - LRK54_RS00620 0.21 -1.0
127,585 - LRK54_RS00620 0.21 -1.7
127,585 - LRK54_RS00620 0.21 -0.8
127,585 - LRK54_RS00620 0.21 -1.7
127,585 - LRK54_RS00620 0.21 -1.1
127,585 - LRK54_RS00620 0.21 -1.5
127,585 - LRK54_RS00620 0.21 -0.3
127,585 - LRK54_RS00620 0.21 -1.2
127,585 - LRK54_RS00620 0.21 -1.0
127,585 - LRK54_RS00620 0.21 -0.7
127,585 - LRK54_RS00620 0.21 -0.3
127,585 - LRK54_RS00620 0.21 -1.8
127,585 - LRK54_RS00620 0.21 -1.8
127,585 - LRK54_RS00620 0.21 +0.0
127,585 - LRK54_RS00620 0.21 -1.3
127,585 - LRK54_RS00620 0.21 -1.4
127,585 - LRK54_RS00620 0.21 -0.5
127,585 - LRK54_RS00620 0.21 -1.3
127,585 - LRK54_RS00620 0.21 -1.8
127,650 + LRK54_RS00620 0.27 -2.5
127,651 - LRK54_RS00620 0.27 +0.7
127,651 - LRK54_RS00620 0.27 +0.0
127,651 - LRK54_RS00620 0.27 +2.3
127,716 + LRK54_RS00620 0.33 +1.3
127,717 - LRK54_RS00620 0.33 -1.5
127,717 - LRK54_RS00620 0.33 -1.7
127,717 - LRK54_RS00620 0.33 -0.6
127,717 - LRK54_RS00620 0.33 -0.3
127,717 - LRK54_RS00620 0.33 -1.5
127,848 + LRK54_RS00620 0.45 -1.3
127,848 + LRK54_RS00620 0.45 -0.7
127,848 + LRK54_RS00620 0.45 +0.3
127,849 - LRK54_RS00620 0.45 -1.3
127,849 - LRK54_RS00620 0.45 -0.5
127,849 - LRK54_RS00620 0.45 -0.9
127,849 - LRK54_RS00620 0.45 -0.8
127,849 - LRK54_RS00620 0.45 -1.0
127,849 - LRK54_RS00620 0.45 -0.3
127,849 - LRK54_RS00620 0.45 -2.8
127,849 - LRK54_RS00620 0.45 -3.2
127,849 - LRK54_RS00620 0.45 -2.5
127,849 - LRK54_RS00620 0.45 -0.5
127,849 - LRK54_RS00620 0.45 -0.3
127,849 - LRK54_RS00620 0.45 -1.7
127,849 - LRK54_RS00620 0.45 -2.3
127,852 + LRK54_RS00620 0.46 -0.8
127,853 - LRK54_RS00620 0.46 -0.1
127,853 - LRK54_RS00620 0.46 -0.7
127,853 - LRK54_RS00620 0.46 -0.1
127,853 - LRK54_RS00620 0.46 +0.3
127,853 - LRK54_RS00620 0.46 -1.3
127,853 - LRK54_RS00620 0.46 -1.0
128,010 + LRK54_RS00620 0.60 -1.8
128,010 + LRK54_RS00620 0.60 +0.3
128,011 - LRK54_RS00620 0.61 +0.3
128,011 - LRK54_RS00620 0.61 -1.1
128,011 - LRK54_RS00620 0.61 -1.5
128,011 - LRK54_RS00620 0.61 +0.0
128,011 - LRK54_RS00620 0.61 -0.7
128,011 - LRK54_RS00620 0.61 -0.7
128,011 - +0.7
128,011 - LRK54_RS00620 0.61 +0.0
128,011 - LRK54_RS00620 0.61 -1.8
128,011 - LRK54_RS00620 0.61 -1.4
128,011 - LRK54_RS00620 0.61 -1.4
128,011 - LRK54_RS00620 0.61 -0.3
128,011 - LRK54_RS00620 0.61 -1.3
128,011 - LRK54_RS00620 0.61 -0.5
128,011 - LRK54_RS00620 0.61 -0.3
128,011 - LRK54_RS00620 0.61 -0.7
128,034 + LRK54_RS00620 0.63 -0.7
128,035 - LRK54_RS00620 0.63 -2.6
128,035 - LRK54_RS00620 0.63 +2.3
128,035 - LRK54_RS00620 0.63 -2.7
128,035 - LRK54_RS00620 0.63 +1.3
128,035 - LRK54_RS00620 0.63 -1.8
128,035 - LRK54_RS00620 0.63 +0.3
128,035 - LRK54_RS00620 0.63 +1.3
128,035 - LRK54_RS00620 0.63 -3.1
128,035 - LRK54_RS00620 0.63 -0.8
128,035 - LRK54_RS00620 0.63 -2.6
128,035 - LRK54_RS00620 0.63 -1.3
128,210 + LRK54_RS00620 0.79 -1.8
128,210 + LRK54_RS00620 0.79 -1.7
128,211 - +1.3
128,211 - LRK54_RS00620 0.79 +0.7
128,211 - LRK54_RS00620 0.79 -0.3
128,211 - LRK54_RS00620 0.79 -1.0
128,241 + LRK54_RS00620 0.82 -1.0
128,241 + LRK54_RS00620 0.82 -2.1
128,241 + LRK54_RS00620 0.82 -0.5
128,241 + LRK54_RS00620 0.82 +1.3
128,241 + LRK54_RS00620 0.82 -0.7
128,241 + LRK54_RS00620 0.82 +0.7
128,242 - LRK54_RS00620 0.82 -3.9
128,242 - LRK54_RS00620 0.82 +0.3
128,242 - LRK54_RS00620 0.82 +1.3
128,242 - LRK54_RS00620 0.82 -1.5
128,242 - LRK54_RS00620 0.82 +0.7
128,242 - LRK54_RS00620 0.82 -0.8
128,242 - LRK54_RS00620 0.82 -1.1
128,242 - LRK54_RS00620 0.82 -1.6
128,242 - LRK54_RS00620 0.82 -1.8
128,242 - LRK54_RS00620 0.82 -2.6
128,242 - LRK54_RS00620 0.82 +0.3
128,242 - LRK54_RS00620 0.82 +0.0
128,242 - LRK54_RS00620 0.82 -2.1
128,242 - LRK54_RS00620 0.82 -0.5
128,242 - LRK54_RS00620 0.82 -1.6
128,242 - LRK54_RS00620 0.82 -0.8
128,242 - LRK54_RS00620 0.82 -2.5
128,242 - LRK54_RS00620 0.82 +0.0
128,242 - LRK54_RS00620 0.82 +0.7

Or see this region's nucleotide sequence