Experiment: R2A with FW104 filtrate 0.5 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS00340 and LRK54_RS00345 are separated by 121 nucleotides LRK54_RS00345 and LRK54_RS00350 are separated by 61 nucleotides LRK54_RS00350 and LRK54_RS00355 are separated by 91 nucleotides LRK54_RS00355 and LRK54_RS00360 are separated by 303 nucleotides
LRK54_RS00340: LRK54_RS00340 - carbon-nitrogen hydrolase, at 77,731 to 78,621
_RS00340
LRK54_RS00345: LRK54_RS00345 - TraB/GumN family protein, at 78,743 to 79,978
_RS00345
LRK54_RS00350: LRK54_RS00350 - tRNA-Leu, at 80,040 to 80,126
_RS00350
LRK54_RS00355: LRK54_RS00355 - HU family DNA-binding protein, at 80,218 to 80,598
_RS00355
LRK54_RS00360: LRK54_RS00360 - tRNA-Cys, at 80,902 to 80,975
_RS00360
Position (kb) 78
79
80 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 78.619 kb on + strand at 78.619 kb on + strand at 78.619 kb on + strand at 78.619 kb on + strand at 78.619 kb on + strand at 78.620 kb on - strand at 78.620 kb on - strand at 78.620 kb on - strand at 78.620 kb on - strand at 78.620 kb on - strand at 78.620 kb on - strand at 78.620 kb on - strand at 78.718 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 78.831 kb on - strand at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.343 kb on + strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.344 kb on - strand, within LRK54_RS00345 at 79.940 kb on + strand at 79.940 kb on + strand at 79.940 kb on + strand at 79.940 kb on + strand at 79.940 kb on + strand at 79.940 kb on + strand at 79.940 kb on + strand at 79.941 kb on - strand at 79.941 kb on - strand at 79.941 kb on - strand at 79.941 kb on - strand at 79.941 kb on - strand at 79.941 kb on - strand at 79.941 kb on - strand at 79.941 kb on - strand at 79.941 kb on - strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.003 kb on + strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.616 kb on + strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.617 kb on - strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.634 kb on + strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.635 kb on - strand at 80.657 kb on + strand at 80.658 kb on - strand at 80.658 kb on - strand at 80.750 kb on + strand at 80.751 kb on - strand at 80.751 kb on - strand at 80.751 kb on - strand at 80.751 kb on - strand at 80.751 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X remove 78,619 + -0.4 78,619 + -0.2 78,619 + -0.1 78,619 + -1.0 78,619 + -0.9 78,620 - +0.7 78,620 - -1.3 78,620 - +0.7 78,620 - +0.7 78,620 - +0.6 78,620 - -0.7 78,620 - -2.8 78,718 + +0.5 78,830 + -0.6 78,830 + -2.4 78,830 + +0.2 78,830 + -0.3 78,830 + -2.3 78,830 + -0.7 78,830 + +0.0 78,830 + -0.3 78,830 + -1.0 78,830 + -1.6 78,830 + -0.3 78,830 + -0.2 78,830 + -0.8 78,830 + -2.4 78,830 + -0.3 78,830 + -0.3 78,831 - +0.3 78,831 - -1.0 78,831 - +1.0 78,831 - +0.3 78,831 - -1.5 78,831 - +0.0 78,831 - +0.4 78,831 - -0.3 78,831 - -1.6 78,831 - -0.6 78,831 - -2.3 78,831 - +0.3 78,831 - -0.1 78,831 - -1.2 78,831 - +0.5 78,831 - +0.0 78,831 - -2.1 78,831 - -2.5 78,831 - -0.1 79,343 + LRK54_RS00345 0.49 -1.4 79,343 + LRK54_RS00345 0.49 +0.7 79,343 + LRK54_RS00345 0.49 +1.6 79,343 + LRK54_RS00345 0.49 +0.2 79,343 + LRK54_RS00345 0.49 -2.1 79,343 + LRK54_RS00345 0.49 -1.6 79,343 + LRK54_RS00345 0.49 +1.0 79,343 + LRK54_RS00345 0.49 -2.1 79,344 - LRK54_RS00345 0.49 -1.1 79,344 - LRK54_RS00345 0.49 +0.2 79,344 - LRK54_RS00345 0.49 -1.8 79,344 - LRK54_RS00345 0.49 -1.0 79,344 - LRK54_RS00345 0.49 -1.8 79,344 - LRK54_RS00345 0.49 -1.7 79,344 - LRK54_RS00345 0.49 -0.1 79,344 - LRK54_RS00345 0.49 +1.6 79,940 + -2.4 79,940 + -0.5 79,940 + -1.9 79,940 + -2.2 79,940 + -0.1 79,940 + -0.3 79,940 + -1.0 79,941 - -2.0 79,941 - +0.2 79,941 - +0.2 79,941 - +0.7 79,941 - +1.5 79,941 - -0.1 79,941 - -0.5 79,941 - -1.2 79,941 - -1.8 80,003 + -0.4 80,003 + +0.2 80,003 + -0.1 80,003 + +0.2 80,003 + +0.2 80,003 + -0.5 80,003 + +0.5 80,003 + -0.6 80,003 + -1.6 80,003 + -0.7 80,003 + +0.6 80,003 + -1.9 80,003 + -0.1 80,003 + -0.2 80,003 + +0.3 80,003 + -0.7 80,003 + -0.7 80,003 + +0.0 80,003 + -0.6 80,003 + -0.2 80,003 + +0.0 80,003 + +1.5 80,004 - -0.1 80,004 - +0.6 80,004 - +0.3 80,004 - -0.3 80,004 - -0.7 80,004 - +0.4 80,004 - -0.2 80,004 - -0.4 80,004 - -0.5 80,004 - +0.6 80,004 - -1.6 80,004 - -1.3 80,004 - -0.2 80,004 - -0.9 80,004 - -0.5 80,004 - -2.1 80,004 - -0.9 80,004 - -0.2 80,004 - -0.5 80,004 - -0.3 80,004 - +3.9 80,004 - -0.7 80,004 - +0.0 80,004 - +1.0 80,004 - -0.7 80,616 + -0.8 80,616 + -0.2 80,616 + -2.4 80,616 + +1.3 80,616 + +0.1 80,616 + -0.8 80,616 + -0.4 80,616 + +0.0 80,616 + +1.4 80,616 + +0.9 80,616 + +0.8 80,616 + -0.5 80,616 + -0.4 80,616 + -0.8 80,616 + +0.0 80,616 + +1.2 80,616 + +0.7 80,616 + -0.1 80,616 + -0.2 80,616 + -0.5 80,616 + +0.7 80,617 - -1.3 80,617 - -0.7 80,617 - -1.0 80,617 - -0.0 80,617 - -0.8 80,617 - +0.2 80,617 - -0.3 80,617 - +1.7 80,617 - -1.4 80,617 - -0.1 80,617 - -0.3 80,617 - -0.1 80,617 - -0.3 80,617 - -0.9 80,617 - -0.1 80,617 - +2.9 80,617 - +2.3 80,617 - -0.8 80,634 + -0.9 80,634 + -1.6 80,634 + +0.4 80,634 + -1.6 80,634 + -1.0 80,634 + +0.6 80,634 + -0.1 80,634 + +1.1 80,634 + +0.7 80,634 + -0.7 80,634 + -0.8 80,634 + -0.5 80,634 + -0.9 80,634 + +0.3 80,634 + -0.1 80,634 + -0.6 80,634 + +0.6 80,635 - +1.9 80,635 - -1.0 80,635 - +0.0 80,635 - +0.0 80,635 - -0.8 80,635 - +0.9 80,635 - -0.3 80,635 - -0.4 80,635 - +1.3 80,635 - +0.2 80,635 - +0.3 80,635 - -1.1 80,635 - +0.7 80,635 - -0.9 80,635 - -0.2 80,635 - -1.1 80,657 + -1.5 80,658 - +0.9 80,658 - +0.2 80,750 + -1.6 80,751 - -0.8 80,751 - +0.4 80,751 - +0.1 80,751 - -0.7 80,751 - +0.3
Or see this region's nucleotide sequence