Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23260 and HSERO_RS23265 overlap by 4 nucleotides HSERO_RS23265 and HSERO_RS23270 overlap by 4 nucleotides HSERO_RS23270 and HSERO_RS23275 are separated by 168 nucleotides
HSERO_RS23260: HSERO_RS23260 - ABC transporter permease, at 5,338,359 to 5,339,363
_RS23260
HSERO_RS23265: HSERO_RS23265 - ABC transporter, at 5,339,360 to 5,340,127
_RS23265
HSERO_RS23270: HSERO_RS23270 - ABC transporter, at 5,340,124 to 5,340,828
_RS23270
HSERO_RS23275: HSERO_RS23275 - allantoate amidohydrolase, at 5,340,997 to 5,342,256
_RS23275
Position (kb) 5340
5341 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5339.135 kb on + strand, within HSERO_RS23260 at 5339.148 kb on - strand, within HSERO_RS23260 at 5339.446 kb on + strand, within HSERO_RS23265 at 5339.952 kb on + strand, within HSERO_RS23265 at 5339.960 kb on - strand, within HSERO_RS23265 at 5340.054 kb on - strand at 5340.228 kb on - strand, within HSERO_RS23270 at 5340.228 kb on - strand, within HSERO_RS23270 at 5340.253 kb on + strand, within HSERO_RS23270 at 5340.261 kb on - strand, within HSERO_RS23270 at 5340.396 kb on + strand, within HSERO_RS23270 at 5340.657 kb on - strand at 5340.689 kb on + strand, within HSERO_RS23270 at 5340.881 kb on - strand at 5340.897 kb on + strand at 5340.947 kb on - strand at 5341.037 kb on + strand at 5341.058 kb on - strand at 5341.253 kb on - strand, within HSERO_RS23275 at 5341.263 kb on + strand, within HSERO_RS23275 at 5341.361 kb on - strand, within HSERO_RS23275 at 5341.376 kb on + strand, within HSERO_RS23275 at 5341.402 kb on + strand, within HSERO_RS23275 at 5341.542 kb on + strand, within HSERO_RS23275 at 5341.542 kb on + strand, within HSERO_RS23275 at 5341.650 kb on - strand, within HSERO_RS23275 at 5341.661 kb on - strand, within HSERO_RS23275 at 5341.706 kb on - strand, within HSERO_RS23275 at 5341.778 kb on + strand, within HSERO_RS23275
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 5,339,135 + HSERO_RS23260 0.77 -0.6 5,339,148 - HSERO_RS23260 0.79 +0.5 5,339,446 + HSERO_RS23265 0.11 +0.3 5,339,952 + HSERO_RS23265 0.77 -1.0 5,339,960 - HSERO_RS23265 0.78 -1.1 5,340,054 - +0.2 5,340,228 - HSERO_RS23270 0.15 +1.9 5,340,228 - HSERO_RS23270 0.15 +0.7 5,340,253 + HSERO_RS23270 0.18 -0.6 5,340,261 - HSERO_RS23270 0.19 +0.7 5,340,396 + HSERO_RS23270 0.39 +0.3 5,340,657 - +2.1 5,340,689 + HSERO_RS23270 0.80 +0.9 5,340,881 - -0.7 5,340,897 + +0.3 5,340,947 - +0.9 5,341,037 + +0.4 5,341,058 - -0.8 5,341,253 - HSERO_RS23275 0.20 +0.3 5,341,263 + HSERO_RS23275 0.21 +0.4 5,341,361 - HSERO_RS23275 0.29 +0.1 5,341,376 + HSERO_RS23275 0.30 -0.9 5,341,402 + HSERO_RS23275 0.32 +0.2 5,341,542 + HSERO_RS23275 0.43 +0.2 5,341,542 + HSERO_RS23275 0.43 +0.1 5,341,650 - HSERO_RS23275 0.52 -0.5 5,341,661 - HSERO_RS23275 0.53 -3.2 5,341,706 - HSERO_RS23275 0.56 -0.3 5,341,778 + HSERO_RS23275 0.62 +0.9
Or see this region's nucleotide sequence