Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03995 and HSERO_RS04000 are separated by 93 nucleotides HSERO_RS04000 and HSERO_RS04005 are separated by 42 nucleotides HSERO_RS04005 and HSERO_RS04010 are separated by 11 nucleotides HSERO_RS04010 and HSERO_RS04015 are separated by 247 nucleotides
HSERO_RS03995: HSERO_RS03995 - hypothetical protein, at 876,451 to 876,981
_RS03995
HSERO_RS04000: HSERO_RS04000 - type III secretion protein, at 877,075 to 877,464
_RS04000
HSERO_RS04005: HSERO_RS04005 - type III secretion protein, at 877,507 to 878,358
_RS04005
HSERO_RS04010: HSERO_RS04010 - hypothetical protein, at 878,370 to 878,840
_RS04010
HSERO_RS04015: HSERO_RS04015 - flagellar biosynthesis/type III secretory pathway protein, at 879,088 to 879,624
_RS04015
Position (kb) 877
878
879 Strain fitness (log2 ratio) -2
-1
0
1 at 876.609 kb on + strand, within HSERO_RS03995 at 876.806 kb on - strand, within HSERO_RS03995 at 876.968 kb on + strand at 877.019 kb on + strand at 877.019 kb on + strand at 877.019 kb on + strand at 877.027 kb on - strand at 877.027 kb on - strand at 877.063 kb on + strand at 877.085 kb on + strand at 877.093 kb on - strand at 877.225 kb on + strand, within HSERO_RS04000 at 877.415 kb on - strand, within HSERO_RS04000 at 877.671 kb on + strand, within HSERO_RS04005 at 877.678 kb on + strand at 877.970 kb on + strand, within HSERO_RS04005 at 877.978 kb on - strand, within HSERO_RS04005 at 878.048 kb on + strand, within HSERO_RS04005 at 878.056 kb on + strand, within HSERO_RS04005 at 878.193 kb on + strand at 878.193 kb on + strand, within HSERO_RS04005 at 878.283 kb on + strand at 878.291 kb on - strand at 878.303 kb on - strand at 878.303 kb on - strand at 878.358 kb on + strand at 878.371 kb on - strand at 878.473 kb on + strand, within HSERO_RS04010 at 878.542 kb on + strand, within HSERO_RS04010 at 878.604 kb on - strand, within HSERO_RS04010 at 878.682 kb on + strand, within HSERO_RS04010 at 879.011 kb on - strand at 879.011 kb on - strand at 879.011 kb on - strand at 879.016 kb on + strand at 879.106 kb on - strand at 879.251 kb on + strand, within HSERO_RS04015
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 876,609 + HSERO_RS03995 0.30 -1.2 876,806 - HSERO_RS03995 0.67 -1.3 876,968 + +0.3 877,019 + +0.7 877,019 + +0.1 877,019 + +0.6 877,027 - -2.5 877,027 - +0.5 877,063 + -0.4 877,085 + +0.0 877,093 - +1.1 877,225 + HSERO_RS04000 0.38 -1.1 877,415 - HSERO_RS04000 0.87 -0.2 877,671 + HSERO_RS04005 0.19 -0.4 877,678 + +1.5 877,970 + HSERO_RS04005 0.54 +0.0 877,978 - HSERO_RS04005 0.55 +0.5 878,048 + HSERO_RS04005 0.63 +0.4 878,056 + HSERO_RS04005 0.64 +0.2 878,193 + +0.5 878,193 + HSERO_RS04005 0.81 +1.4 878,283 + -0.5 878,291 - -0.5 878,303 - +0.1 878,303 - +1.3 878,358 + +0.4 878,371 - -0.7 878,473 + HSERO_RS04010 0.22 -0.0 878,542 + HSERO_RS04010 0.37 +0.2 878,604 - HSERO_RS04010 0.50 +0.3 878,682 + HSERO_RS04010 0.66 +0.4 879,011 - -0.5 879,011 - +0.5 879,011 - -0.3 879,016 + -0.8 879,106 - +0.1 879,251 + HSERO_RS04015 0.30 -0.4
Or see this region's nucleotide sequence