Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS01925

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS01915 and HSERO_RS01920 are separated by 3 nucleotidesHSERO_RS01920 and HSERO_RS01925 are separated by 41 nucleotidesHSERO_RS01925 and HSERO_RS01930 are separated by 95 nucleotidesHSERO_RS01930 and HSERO_RS01935 are separated by 134 nucleotides HSERO_RS01915: HSERO_RS01915 - membrane protein, at 421,059 to 422,348 _RS01915 HSERO_RS01920: HSERO_RS01920 - 50S ribosomal protein L11 methyltransferase, at 422,352 to 423,266 _RS01920 HSERO_RS01925: HSERO_RS01925 - acetyl-CoA carboxylase biotin carboxylase subunit, at 423,308 to 424,687 _RS01925 HSERO_RS01930: HSERO_RS01930 - acetyl-CoA carboxylase, at 424,783 to 425,256 _RS01930 HSERO_RS01935: HSERO_RS01935 - 3-dehydroquinate dehydratase, at 425,391 to 425,828 _RS01935 Position (kb) 423 424 425Strain fitness (log2 ratio) -2 -1 0 1at 422.413 kb on - strandat 422.510 kb on + strand, within HSERO_RS01920at 422.518 kb on - strand, within HSERO_RS01920at 422.609 kb on + strand, within HSERO_RS01920at 422.751 kb on + strand, within HSERO_RS01920at 422.972 kb on - strand, within HSERO_RS01920at 423.001 kb on + strand, within HSERO_RS01920at 423.014 kb on - strand, within HSERO_RS01920at 425.397 kb on - strandat 425.456 kb on - strand, within HSERO_RS01935at 425.573 kb on - strand, within HSERO_RS01935

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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422,413 - -0.1
422,510 + HSERO_RS01920 0.17 +0.9
422,518 - HSERO_RS01920 0.18 +0.3
422,609 + HSERO_RS01920 0.28 +0.3
422,751 + HSERO_RS01920 0.44 -0.1
422,972 - HSERO_RS01920 0.68 +1.3
423,001 + HSERO_RS01920 0.71 +0.0
423,014 - HSERO_RS01920 0.72 +1.3
425,397 - -2.2
425,456 - HSERO_RS01935 0.15 -0.1
425,573 - HSERO_RS01935 0.42 -0.1

Or see this region's nucleotide sequence