Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00930 and HSERO_RS00935 are separated by 17 nucleotides HSERO_RS00935 and HSERO_RS00940 are separated by 224 nucleotides HSERO_RS00940 and HSERO_RS00945 are separated by 109 nucleotides
HSERO_RS00930: HSERO_RS00930 - hypothetical protein, at 196,282 to 197,823
_RS00930
HSERO_RS00935: HSERO_RS00935 - TonB-denpendent receptor, at 197,841 to 199,955
_RS00935
HSERO_RS00940: HSERO_RS00940 - general secretion pathway protein, at 200,180 to 200,647
_RS00940
HSERO_RS00945: HSERO_RS00945 - frataxin, at 200,757 to 201,089
_RS00945
Position (kb) 197
198
199
200 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 196.850 kb on + strand, within HSERO_RS00930 at 196.885 kb on - strand, within HSERO_RS00930 at 196.990 kb on + strand, within HSERO_RS00930 at 197.089 kb on - strand, within HSERO_RS00930 at 197.175 kb on - strand, within HSERO_RS00930 at 197.216 kb on + strand, within HSERO_RS00930 at 197.267 kb on - strand, within HSERO_RS00930 at 197.299 kb on + strand, within HSERO_RS00930 at 197.325 kb on + strand, within HSERO_RS00930 at 197.343 kb on + strand, within HSERO_RS00930 at 197.379 kb on + strand, within HSERO_RS00930 at 197.399 kb on - strand, within HSERO_RS00930 at 197.413 kb on + strand, within HSERO_RS00930 at 197.475 kb on + strand, within HSERO_RS00930 at 197.530 kb on + strand, within HSERO_RS00930 at 197.640 kb on + strand, within HSERO_RS00930 at 197.707 kb on + strand at 197.715 kb on - strand at 197.715 kb on - strand at 197.818 kb on + strand at 197.858 kb on + strand at 197.961 kb on - strand at 197.963 kb on - strand at 198.023 kb on + strand at 198.023 kb on + strand at 198.031 kb on - strand at 198.233 kb on + strand, within HSERO_RS00935 at 198.321 kb on - strand, within HSERO_RS00935 at 198.445 kb on + strand, within HSERO_RS00935 at 198.459 kb on - strand, within HSERO_RS00935 at 198.482 kb on + strand, within HSERO_RS00935 at 198.490 kb on - strand, within HSERO_RS00935 at 198.605 kb on + strand, within HSERO_RS00935 at 198.613 kb on - strand, within HSERO_RS00935 at 198.685 kb on - strand, within HSERO_RS00935 at 198.685 kb on - strand, within HSERO_RS00935 at 198.685 kb on - strand, within HSERO_RS00935 at 198.685 kb on - strand, within HSERO_RS00935 at 198.695 kb on - strand, within HSERO_RS00935 at 198.719 kb on - strand, within HSERO_RS00935 at 199.170 kb on - strand, within HSERO_RS00935 at 199.344 kb on + strand, within HSERO_RS00935 at 199.351 kb on + strand, within HSERO_RS00935 at 199.448 kb on + strand, within HSERO_RS00935 at 199.473 kb on + strand, within HSERO_RS00935 at 199.596 kb on + strand, within HSERO_RS00935 at 199.661 kb on + strand, within HSERO_RS00935 at 199.669 kb on - strand, within HSERO_RS00935 at 199.686 kb on - strand, within HSERO_RS00935 at 199.740 kb on - strand, within HSERO_RS00935 at 199.764 kb on + strand at 199.798 kb on + strand at 199.846 kb on - strand at 199.858 kb on + strand at 199.925 kb on - strand at 199.977 kb on - strand at 200.064 kb on - strand at 200.183 kb on + strand at 200.197 kb on + strand at 200.282 kb on - strand, within HSERO_RS00940 at 200.284 kb on + strand, within HSERO_RS00940 at 200.343 kb on + strand, within HSERO_RS00940 at 200.390 kb on + strand, within HSERO_RS00940 at 200.508 kb on + strand, within HSERO_RS00940 at 200.627 kb on + strand at 200.799 kb on - strand, within HSERO_RS00945
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 196,850 + HSERO_RS00930 0.37 +0.6 196,885 - HSERO_RS00930 0.39 -2.9 196,990 + HSERO_RS00930 0.46 -0.7 197,089 - HSERO_RS00930 0.52 +0.1 197,175 - HSERO_RS00930 0.58 -0.7 197,216 + HSERO_RS00930 0.61 -0.7 197,267 - HSERO_RS00930 0.64 -0.5 197,299 + HSERO_RS00930 0.66 -0.4 197,325 + HSERO_RS00930 0.68 -2.3 197,343 + HSERO_RS00930 0.69 +0.3 197,379 + HSERO_RS00930 0.71 +0.3 197,399 - HSERO_RS00930 0.72 -0.0 197,413 + HSERO_RS00930 0.73 +0.4 197,475 + HSERO_RS00930 0.77 +0.4 197,530 + HSERO_RS00930 0.81 +1.0 197,640 + HSERO_RS00930 0.88 +0.2 197,707 + +0.7 197,715 - +1.1 197,715 - -0.5 197,818 + -0.1 197,858 + +0.5 197,961 - +0.4 197,963 - +2.0 198,023 + -0.1 198,023 + -1.2 198,031 - +0.1 198,233 + HSERO_RS00935 0.19 +0.2 198,321 - HSERO_RS00935 0.23 -2.0 198,445 + HSERO_RS00935 0.29 +0.2 198,459 - HSERO_RS00935 0.29 +0.4 198,482 + HSERO_RS00935 0.30 -0.7 198,490 - HSERO_RS00935 0.31 +0.5 198,605 + HSERO_RS00935 0.36 +0.1 198,613 - HSERO_RS00935 0.37 -1.0 198,685 - HSERO_RS00935 0.40 +0.1 198,685 - HSERO_RS00935 0.40 -0.0 198,685 - HSERO_RS00935 0.40 -0.1 198,685 - HSERO_RS00935 0.40 +2.5 198,695 - HSERO_RS00935 0.40 +1.5 198,719 - HSERO_RS00935 0.42 +1.0 199,170 - HSERO_RS00935 0.63 +0.1 199,344 + HSERO_RS00935 0.71 -0.9 199,351 + HSERO_RS00935 0.71 -0.7 199,448 + HSERO_RS00935 0.76 +0.0 199,473 + HSERO_RS00935 0.77 -0.9 199,596 + HSERO_RS00935 0.83 +0.3 199,661 + HSERO_RS00935 0.86 -0.2 199,669 - HSERO_RS00935 0.86 -1.2 199,686 - HSERO_RS00935 0.87 -0.3 199,740 - HSERO_RS00935 0.90 +0.1 199,764 + -1.3 199,798 + +0.1 199,846 - -0.2 199,858 + -0.2 199,925 - -0.2 199,977 - -2.4 200,064 - -0.5 200,183 + -0.6 200,197 + -0.2 200,282 - HSERO_RS00940 0.22 -0.5 200,284 + HSERO_RS00940 0.22 +1.0 200,343 + HSERO_RS00940 0.35 +2.0 200,390 + HSERO_RS00940 0.45 -0.7 200,508 + HSERO_RS00940 0.70 +0.5 200,627 + -0.9 200,799 - HSERO_RS00945 0.13 -0.2
Or see this region's nucleotide sequence